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绵羊甘露聚糖结合凝集素基因启动子区的克隆与序列分析 被引量:3

Cloning and Sequence Analysis of the Promoter Region of Sheep Mannan-binding Lectin Gene
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摘要 为了探讨绵羊甘露聚糖结合凝集素(mannan-binding lectin,MBL)基因启动子区活性及转录调控机制,本试验根据已提交的绵羊MBL序列设计3条特异性引物,采用热不对称交错PCR(thermal asymmetric interlaced PCR,TAIL-PCR)技术扩增获得绵羊MBL基因的启动子区序列。经生物信息学分析,确定了其转录活性区域,发现绵羊MBL基因启动子无TATA框,但其存在多个PEA3和Spi-1/PU.1转录因子结合位点,二者同属Ets家族,且参与绵羊MBL基因转录起始复合体的形成。此外,该序列还包含Sp1、GATA-1、TCF/LEF等其他转录因子结合位点。结果表明,试验成功克隆获得了绵羊MBL基因的启动子区序列,为后期MBL基因启动子区活性及其表达调控机制和甲基化研究奠定基础。 In order to investigate the promoter region activity and transcriptional control mechanism of ovine mannan-binding lectin(MBL) gene,the thermal asymmetric interlaced PCR(TAIL-PCR) technology was adopted in this study.Meanwhile,three specific primers were designed according to the MBL sequence submitted on sheep,and we ultimately got the promoter sequences of the sheep MBL gene.By the bioinformatics analysis,we defined its transcriptional activity region,and found that the promoter of sheep MBL gene didn't have TATA-box,however,there were several binding sites between PEA3 and Spi-1/PU.1 transcription factor,which both belonged to the Ets family and were involved in the formation of transcription initiation complex formation in ovine MBL gene.In addition,the sequence also contained Sp1,GATA-1,TCF/LEF and other binding sites of transcription factors.The clone of promoter region sequence of ovine MBL gene in this study,made a foundation for the latter studies on the promoter region activity and its expression and control mechanisms,even on the methylation of the sheep MBL gene.
出处 《中国畜牧兽医》 CAS 北大核心 2011年第3期87-92,共6页 China Animal Husbandry & Veterinary Medicine
基金 国家自然基金项目(30960247)
关键词 绵羊 MBL 启动子区 克隆 TAIL-PCR 序列分析 sheep MBL promoter region clone TAIL-PCR sequence analysis
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  • 1肖燕,崔社怀.肺表面活性蛋白A在免疫炎症反应中的作用[J].免疫学杂志,2000,16(z1):102-105. 被引量:5
  • 2Zhu J, Zhang MQ. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinfo rmatics, 1999, 15(7-8): 607-611.
  • 3Jiang C, Xuan Z, Zhao F, Zhang MQ. TRED: a transcriptional regulatory element database, new entries and other development. Nucleic Acids Res, 2007, 35(Database issue) D137-140.
  • 4Zheng G, Tu K, Yang Q, Xiong Y, Wei C, Xie Lu, Zhu Y, Li Y. ITFP: an integrated platform of mammalian transcription factors. Bioinformatics, 2008, 24(20): 2416-2417.
  • 5Day WH, McMorris FR. Critical comparison of consensus methods for molecular sequences. Nucleic Acids Res, 1992, 20(5): 1093-1099.
  • 6Staden R. Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res, 1984, 12(1 Pt 2): 505-519.
  • 7Benos PV, Bulyk ML, Stormo GD. Additivity in pro-tein-DNA interactions: how good an approximation is it? Nucleic Acids Res, 2002, 30(20): 4442-4451.
  • 8Maerkl S J, Quake SR. A systems approach to measuring the binding energy landscapes of transcription factors. Science, 2007, 315(5809): 233-237.
  • 9Tomovic A, Oakeley EJ. Position dependencies in tran-scription factor binding sites. Bioinformaties, 2007, 23(8): 933-941.
  • 10Barash Y, Elidan G, Friedman N, Kaplan T. Modeling Dependencies in Protein-DNA Binding Sites. In: Proceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology. Berlin, Germany, 2003, 28-37.

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  • 1卢强,丰培金,李莲瑞,付宝权,刘明远.有丝分裂原刺激的鲤鱼外周血白细胞cDNA文库的构建[J].中国兽医学报,2004,24(6):568-570. 被引量:17
  • 2Bobe J,Goetz F W. Molecular cloning and expression of a TNF receptor and two TNF ligands in the fish ovary. Comp Biochem Physiol B, 2001,129 :475-481.
  • 3Cai Z H, et al. Cloning and expression of tumor necrosis factor (TNF alpha) cDNA from red seabream pagrus major. Acta Bio- chimica et Biophysiea Sinica, 2003,35:1111-1116.
  • 4Garcia-Castillo J, et al. Molecular cloning and expression analy- sis of tumor necrosis factor alpha from a marine fish reveal its constitutive expression and ubiquitous nature. Immunogenefics, 2002,54:200-207.
  • 5Grayfer L, Walsh J, Belosevic M. Characterization and function al analysis of goldfish (Carassius auvatus L. ) tumor necrosis fac tor alpha. Dev Comp Immunol, 2008,9 : 532-- 543.
  • 6Haugland O, et al. Differential expression profiles and gene structure of two tumor necrosis {actor alpha variants in Atlantic salmon (Salmo salar L. ). Mol lmmunol, 2007,44(7):1652-1663.
  • 7Hirono I, et al. Molecular cloning, characterization, and expres- sion of TNF cDNA and gene from Japanese flounder Paraly- chthys olivaceus. J Immunol, 2000,165:4423-4427.
  • 8Kadowaki T, Harada H, Sawada Y, et al. Two types ot tumor necrosis factor alpha in bluefin tuna( Tt2unnus orientalis ) gencs:molecular cloning and expression profile in response 1o several immunological stimulants. Fish Shellfish Immunol, 2009,27 (5) :585-594.
  • 9Laing K J, et al, Cloning and sequencing of caspase 6 in Rain bow, trout,Oncorhynchus mykiss, and analysis of ils expressionunder conditions known to induce apoptosis, Dev Comp lmmu nol, 2001,25:303--312.
  • 10Nascimento D, et al. Molecular cloning and expression analysis of sea bass (Dicentrarchus labra.r L. ) tumor necrosis faclor al pha(TNF-alpha). Fish Shellfish Immunol, 2007,23:701-710.

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