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De Novo Plant Genome Assembly Based on Chromatin Interactions: A Case Study of Arabidopsis thaliana 被引量:17

De Novo Plant Genome Assembly Based on Chromatin Interactions: A Case Study of Arabidopsis thaliana
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摘要 Dear Editor,Genome assembly is typically a two-stage process: paired sequencing reads are joined into contigs, and contigs are assem- bled into scaffolds. Over the past 10 years, next-generation sequencing (NGS) technologies have become inexpensive, routine, and widespread. As a result, most plant genomes that are sequenced by NGS produce “drafts” that are always contig or scaffold maps remaining in a more or less advanced stage of completion (Claros et al., 2012). Slow advances in the technology for the de novo assembly of scaffolds into chromosome-scale scaffolds have become the main restriction to the completion of and high-quality genome sequence acquisition. Dear Editor,Genome assembly is typically a two-stage process: paired sequencing reads are joined into contigs, and contigs are assem- bled into scaffolds. Over the past 10 years, next-generation sequencing (NGS) technologies have become inexpensive, routine, and widespread. As a result, most plant genomes that are sequenced by NGS produce “drafts” that are always contig or scaffold maps remaining in a more or less advanced stage of completion (Claros et al., 2012). Slow advances in the technology for the de novo assembly of scaffolds into chromosome-scale scaffolds have become the main restriction to the completion of and high-quality genome sequence acquisition.
作者 Ting Xie
出处 《Molecular Plant》 SCIE CAS CSCD 2015年第3期489-492,共4页 分子植物(英文版)
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