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Reconstructing cell lineage trees with genomic barcoding:approaches and applications

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摘要 In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in developmental biology and other related fields.Recent technological advancements,especially those in editable genomic barcodes and single-cell high-throughput sequencing,have sparked a new wave of experimental methods for reconstructing CLTs.Here we review the existing experimental approaches to the reconstruction of CLT,which are broadly categorized as either image-based or DNA barcode-based methods.In addition,we present a summary of the related literature based on the biological insight pro-vided by the obtained CLTs.Moreover,we discuss the challenges that will arise as more and better CLT data become available in the near future.Genomic barcoding-based CLT reconstructions and analyses,due to their wide applicability and high scalability,offer the potential for novel biological discoveries,especially those related to general and systemic properties of the developmental process.
出处 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2024年第1期35-47,共13页 遗传学报(英文版)
基金 supported by the National Key Research and Development Program of China(2021YFF1200904,2021YFA1302500 to J.-R.Y.) the National Natural Science Foundation of China(32122022,31871320 to J.-R.Y.) by Science and Technology Planning Project of Guangdong Province,China(2014A030304053 to X.Z.).
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