本研究运用多种软件对12种作物的FAD2基因进行密码子偏好性分析。结果表明:FAD2基因在12种作物中密码子使用偏好性差异很大,禾本科作物玉米、水稻、高粱的FAD2基因有效密码子数(Effec-tive Number of Codons,ENC)在30左右,为偏好性很强...本研究运用多种软件对12种作物的FAD2基因进行密码子偏好性分析。结果表明:FAD2基因在12种作物中密码子使用偏好性差异很大,禾本科作物玉米、水稻、高粱的FAD2基因有效密码子数(Effec-tive Number of Codons,ENC)在30左右,为偏好性很强的基因;油料作物油菜和亚麻的FAD2基因的ENC值分别为45.49和48.58,为一般偏好性基因;另外6种油料作物和模式植物拟南芥的FAD2基因ENC值都大于50,偏好性较弱。玉米、水稻、高粱、油菜、亚麻、花生和拟南芥的FAD2基因偏好以G或C碱基结尾的密码子,其余5种油料作物的FAD2基因偏好使用以A或T结尾的密码子。在12种作物中,密码子CTC的RSCU值都大于1,属于高频使用的密码子;而CTA、ATA、GTA、AGT、CCC属于低频密码子。在聚类分析中,12种作物基于FAD2基因密码子用法与基于CDS序列的聚类结果大体一致。展开更多
[Objective]The study aimed to map QTLs（Quantitative trait loci）of heading stage for phtopeiod-thermo sensitive male sterile line BS366 in wheat.[Method] A population of 234 doubled haploid derived from the cross bet...[Objective]The study aimed to map QTLs（Quantitative trait loci）of heading stage for phtopeiod-thermo sensitive male sterile line BS366 in wheat.[Method] A population of 234 doubled haploid derived from the cross between BS366 and Baiyu149 was planted in Beijing and Funan in 2007,respectively.We used composite interval mapping（CIM）method to analyse the QTLs for heading stage.[Result]We detected 15 QTLs for heading stage.8 QTLs were detected in both Beijing and Funan,which were located on 1B,2A,2D,3B（2 loci）,6B（2 loci）and 7B.A single QTL accounted for 2.42%-10.98% of pheotypic varience.[Conclusion] Eight QTLs which were detected under two environments could be applied for marker-assisted breeding and improvement of BS366.The QTL on chromosome 1B was new for heading stage,which enriches the QTL resource.展开更多
文摘本研究运用多种软件对12种作物的FAD2基因进行密码子偏好性分析。结果表明:FAD2基因在12种作物中密码子使用偏好性差异很大,禾本科作物玉米、水稻、高粱的FAD2基因有效密码子数(Effec-tive Number of Codons,ENC)在30左右,为偏好性很强的基因;油料作物油菜和亚麻的FAD2基因的ENC值分别为45.49和48.58,为一般偏好性基因;另外6种油料作物和模式植物拟南芥的FAD2基因ENC值都大于50,偏好性较弱。玉米、水稻、高粱、油菜、亚麻、花生和拟南芥的FAD2基因偏好以G或C碱基结尾的密码子,其余5种油料作物的FAD2基因偏好使用以A或T结尾的密码子。在12种作物中,密码子CTC的RSCU值都大于1,属于高频使用的密码子;而CTA、ATA、GTA、AGT、CCC属于低频密码子。在聚类分析中,12种作物基于FAD2基因密码子用法与基于CDS序列的聚类结果大体一致。
基金Supported by the Program of Beijing Basic Research and Innovation Platform for Agricultural Breeding Ⅱ(No.D080705006900801)National"863"Program(No.2009AA101102,2006AA100102)Beijing Natural Science Foundation(No.5091001)~~
文摘[Objective]The study aimed to map QTLs（Quantitative trait loci）of heading stage for phtopeiod-thermo sensitive male sterile line BS366 in wheat.[Method] A population of 234 doubled haploid derived from the cross between BS366 and Baiyu149 was planted in Beijing and Funan in 2007,respectively.We used composite interval mapping（CIM）method to analyse the QTLs for heading stage.[Result]We detected 15 QTLs for heading stage.8 QTLs were detected in both Beijing and Funan,which were located on 1B,2A,2D,3B（2 loci）,6B（2 loci）and 7B.A single QTL accounted for 2.42%-10.98% of pheotypic varience.[Conclusion] Eight QTLs which were detected under two environments could be applied for marker-assisted breeding and improvement of BS366.The QTL on chromosome 1B was new for heading stage,which enriches the QTL resource.
