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A telomere-to-telomere genome assembly of Zhonghuang 13,a widely-grown soybean variety from the original center of Glycine max
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作者 anqi zhang Tangchao Kong +21 位作者 Baiquan Sun Shizheng Qiu Jiahe Guo Shuyong Ruan Yu Guo Jirui Guo Zhishuai zhang Yue Liu Zheng Hu Tao Jiang Yadong Liu Shuqi Cao Shi Sun Tingting Wu Huilong Hong Bingjun Jiang Maoxiang Yang Xiangyu Yao Yang Hu Bo Liu Tianfu Han Yadong Wang 《The Crop Journal》 SCIE CSCD 2024年第1期142-153,共12页
Soybean(Glycine max)stands as a globally significant agricultural crop,and the comprehensive assembly of its genome is of paramount importance for unraveling its biological characteristics and evolutionary history.Nev... Soybean(Glycine max)stands as a globally significant agricultural crop,and the comprehensive assembly of its genome is of paramount importance for unraveling its biological characteristics and evolutionary history.Nevertheless,previous soybean genome assemblies have harbored gaps and incompleteness,which have constrained in-depth investigations into soybean.Here,we present Telomere-to-Telomere(T2T)assembly of the Chinese soybean cultivar Zhonghuang 13(ZH13)genome,termed ZH13-T2T,utilizing PacBio Hifi and ONT ultralong reads.We employed a multi-assembler approach,integrating Hifiasm,NextDenovo,and Canu,to minimize biases and enhance assembly accuracy.The assembly spans 1,015,024,879 bp,effectively resolving all 393 gaps that previously plagued the reference genome.Our annotation efforts identified 50,564 high-confidence protein-coding genes,707 of which are novel.ZH13-T2T revealed longer chromosomes,421 not-aligned regions(NARs),112 structure variations(SVs),and a substantial expansion of repetitive element compared to earlier assemblies.Specifically,we identified 25.67 Mb of tandem repeats,an enrichment of 5S and 48S rDNAs,and characterized their genotypic diversity.In summary,we deliver the first complete Chinese soybean cultivar T2T genome.The comprehensive annotation,along with precise centromere and telomere characterization,as well as insights into structural variations,further enhance our understanding of soybean genetics and evolution. 展开更多
关键词 SOYBEAN Telomere-to-Telomere assembly Zhonghuang 13 Structure variations
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Gray code based gradient-free optimization algorithm for parameterized quantum circuit
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作者 张安琪 武春辉 赵生妹 《Chinese Physics B》 SCIE EI CAS CSCD 2024年第2期189-194,共6页
A Gray code based gradient-free optimization(GCO)algorithm is proposed to update the parameters of parameterized quantum circuits(PQCs)in this work.Each parameter of PQCs is encoded as a binary string,named as a gene,... A Gray code based gradient-free optimization(GCO)algorithm is proposed to update the parameters of parameterized quantum circuits(PQCs)in this work.Each parameter of PQCs is encoded as a binary string,named as a gene,and a genetic-based method is adopted to select the offsprings.The individuals in the offspring are decoded in Gray code way to keep Hamming distance,and then are evaluated to obtain the best one with the lowest cost value in each iteration.The algorithm is performed iteratively for all parameters one by one until the cost value satisfies the stop condition or the number of iterations is reached.The GCO algorithm is demonstrated for classification tasks in Iris and MNIST datasets,and their performance are compared by those with the Bayesian optimization algorithm and binary code based optimization algorithm.The simulation results show that the GCO algorithm can reach high accuracies steadily for quantum classification tasks.Importantly,the GCO algorithm has a robust performance in the noise environment. 展开更多
关键词 gradient-free optimization Gray code genetic-based method
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Single-qubit quantum classifier based on gradient-free optimization algorithm
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作者 张安琪 王可伦 +1 位作者 吴逸华 赵生妹 《Chinese Physics B》 SCIE EI CAS CSCD 2023年第10期241-247,共7页
A single-qubit quantum classifier(SQC)based on a gradient-free optimization(GFO)algorithm,named the GFO-based SQC,is proposed to overcome the effects of barren plateaus caused by quantum devices.Here,a rotation gate R... A single-qubit quantum classifier(SQC)based on a gradient-free optimization(GFO)algorithm,named the GFO-based SQC,is proposed to overcome the effects of barren plateaus caused by quantum devices.Here,a rotation gate R_(X)(φ)is applied on the single-qubit binary quantum classifier,and the training data and parameters are loaded intoφin the form of vector multiplication.The cost function is decreased by finding the value of each parameter that yields the minimum expectation value of measuring the quantum circuit.The algorithm is performed iteratively for all parameters one by one until the cost function satisfies the stop condition.The proposed GFO-based SQC is demonstrated for classification tasks in Iris and MNIST datasets and compared with the Adam-based SQC and the quantum support vector machine(QSVM).Furthermore,the performance of the GFO-based SQC is discussed when the rotation gate in the quantum device is under different types of noise.The simulation results show that the GFO-based SQC can reach a high accuracy in reduced time.Additionally,the proposed GFO algorithm can quickly complete the training process of the SQC.Importantly,the GFO-based SQC has a good performance in noisy environments. 展开更多
关键词 single-qubit quantum classifier gradient-free parameters optimizing barren plateau quantum noise
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RNA m^(5)C甲基化修饰在肿瘤中的研究进展 被引量:1
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作者 张安琪 安萌 +3 位作者 姜博 唐文强 潘丽 付波 《中国肿瘤临床》 CAS CSCD 北大核心 2021年第24期1277-1281,共5页
5-甲基胞嘧啶(5-methylcytosine,m^(5)C)是RNA中重要的甲基化修饰之一,也是近年来的研究热点。随着甲基化测序技术的发展,在编码RNA及非编码RNA中均证实存在大量的m5C甲基化修饰。RNA m^(5)C甲基化修饰受m^(5)C甲基转移酶、去甲基化酶及... 5-甲基胞嘧啶(5-methylcytosine,m^(5)C)是RNA中重要的甲基化修饰之一,也是近年来的研究热点。随着甲基化测序技术的发展,在编码RNA及非编码RNA中均证实存在大量的m5C甲基化修饰。RNA m^(5)C甲基化修饰受m^(5)C甲基转移酶、去甲基化酶及m5C甲基化结合蛋白的调控。m^(5)C甲基化修饰调节RNA的稳定性、转运、翻译和压力应激等,并参与调节肿瘤的发生发展、侵袭转移、肿瘤耐药等进程。本文对RNA m^(5)C甲基化修饰的调控机制、功能以及在肿瘤中的研究进展进行综述,以期为肿瘤诊治研究提供新思路。 展开更多
关键词 m^(5)C甲基化修饰 编码RNA 非编码RNA 肿瘤
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Characteristics of oral methicillin-resistant Staphylococcus epidermidis isolated from dental plaque 被引量:3
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作者 Boyu Tang Tao Gong +7 位作者 Yujia Cui Lingyun Wang Chao He Miao Lu Jiamin Chen Meiling Jing anqi zhang Yuqing Li 《International Journal of Oral Science》 SCIE CAS CSCD 2020年第2期152-161,共10页
The oral microbial community is widely regarded as a latent reservoir of antibiotic resistance genes. This study assessed the molecular epidemiology, susceptibility profile, and resistance mechanisms of 35 methicillin... The oral microbial community is widely regarded as a latent reservoir of antibiotic resistance genes. This study assessed the molecular epidemiology, susceptibility profile, and resistance mechanisms of 35 methicillin-resistant Staphylococcus epidermidis(MRSE) strains isolated from the dental plaque of a healthy human population. Broth microdilution minimum inhibitory concentrations(MICs) revealed that all the isolates were nonsusceptible to oxacillin and penicillin G. Most of them were also resistant to trimethoprim(65.7%) and erythromycin(54.3%). The resistance to multiple antibiotics was found to be largely due to the acquisition of plasmid-borne genes. The mec A and dfr A genes were found in all the isolates, mostly dfr G(80%), aac A-aph D(20%), aad D(28.6%), aph A3(22.9%), msr A(5.7%), and the erm C gene(14.3%). Classical mutational mechanisms found in these isolates were mainly efflux pumps such as qac A(31.4%), qac C(25.7%), tet K(17.1%), and nor A(8.6%). Multilocus sequence type analysis revealed that sequence type 59(ST59) strains comprised 71.43% of the typed isolates, and the e BURST algorithm clustered STs into the clonal complex 2-II(CC2-II). The staphyloccoccal cassette chromosome mec(SCCmec) type results showed that 25(71.43%) were assigned to type IV. Moreover, 88.66% of the isolates were found to harbor six or more biofilm-associated genes. The aap, atl E, embp, sdr F, and IS256 genes were detected in all 35 isolates. This research demonstrates that biofilm-positive multipleantibiotic-resistant ST59-SCCmec IV S. epidermidis strains exist in the dental plaque of healthy people and may be a potential risk for the transmission of antibiotic resistance. 展开更多
关键词 EPIDEMIOLOGY RESISTANT RESERVOIR
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Relationship between toxic and harmful microalgae and environmental factors in typical mariculture areas of East China Sea 被引量:1
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作者 anqi zhang Honghan LIU +4 位作者 Chenhong LI Changping CHEN Junrong LIANG Lin SUN Yahui GAO 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2022年第6期2401-2415,共15页
Toxic and harmful algal blooms are usually more frequent in mariculture areas due to the abundant trophic conditions.To investigate the relationship between toxic and harmful microalgae and environmental factors,we se... Toxic and harmful algal blooms are usually more frequent in mariculture areas due to the abundant trophic conditions.To investigate the relationship between toxic and harmful microalgae and environmental factors,we set up 12 stations near three mariculture regions(Gouqi Island,Sandu Bay,and Dongshan Bay)in the East China Sea.We collected samples from all four seasons starting from May 2020 to March 2021.We identifi ed 199 species belonging to 70 genera,of which 38 species were toxic and harmful,including 24 species of Dinophyceae,13 species of Bacillariophyceae,and 1 species of Raphidophyceae.The species composition of toxic and harmful microalgae showed a predominance of diatoms in the summer(August),and dinofl agellates in the spring(May),autumn(November),and winter(March).The cell densities of toxic and harmful microalgae were higher in summer(with an average value of 15.34×10^(3) cells/L)than in other seasons,3.53×10^(3) cells/L in spring,1.82×10^(3) cells/L in winter,and 1.0×10^(3) cells/L in autumn.Pseudo-nitzschia pungens,Prorocentrum minimum,Paralia sulcata,and Prorocentrum micans were the dominant species and were available at all 12 stations in the three mariculture areas.We selected 10 toxic and harmful microalgal species with frequency>6 at the survey stations for the redundancy analysis(RDA),and the results show that NO^(-)_(3),water temperature(WT),pH,DO,and NO^(-)_(2) were the main factors on distribution of toxic and harmful microalgae.We concluded that the rich nutrient conditions in the East China Sea mariculture areas increased the potential for the risk of toxic and harmful microalgal bloom outbreaks. 展开更多
关键词 PHYTOPLANKTON toxic and harmful microalgae environmental factors mariculture areas East China Sea(ECS)
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Observation of the Effect of Gait-induced Functional Electrical Stimulation on Stroke Patients with Foot Drop
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作者 anqi zhang Mengjiao Wu +3 位作者 Luxi Mao Qianhuan zhang Bingqian Zhou Jingxin Wang 《Journal of Advances in Medicine Science》 2022年第1期12-18,共7页
Objective:To explore the effects of functional electrical stimulation and functional mid frequency electrical stimulation on lower limb function and balance function in stroke patients.Methods:20 cases of stroke patie... Objective:To explore the effects of functional electrical stimulation and functional mid frequency electrical stimulation on lower limb function and balance function in stroke patients.Methods:20 cases of stroke patients with foot drop after admission were randomly divided into the observation group and the control group,10 cases in each group.On the basis of the two groups of patients,the observation group used the gait induced functional electrical stimulation to stimulate the peroneal nerve and the pretibial muscle in the observation group.The control group used the computer medium frequency functional electrical stimulation to stimulate the peroneal nerve and the anterior tibial muscle for 2 weeks.Before and after treatment,the lower extremity simple Fugl-Meyer scale(FMA),the Berg balance scale(BBS)and the improved Ashworth scale were evaluated respectively,and the comparative analysis was carried out in the group and between the groups.Results:After 2 weeks of treatment,the scores of FMA and BBS in the two groups were significantly higher than those before the treatment(P<0.05),and the scores of FMA and BBS in the observation group were higher than those in the control group(P<0.05),and the flexor muscle tension of the ankle plantar flexor muscle of the observed group was lower than that of the control group(P<0.05).Conclusions:Exercise therapy combined with gait induced functional electrical stimulation or computer intermediate frequency functional electrical stimulation can significantly improve lower limb function and balance function in patients with ptosis,and the therapeutic effect of functional electrical stimulation combined with gait is better. 展开更多
关键词 Foot drop Functional electrical stimulation Lower limb function Balance function
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华为品牌的全媒体创意策略分析
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作者 张安琪 刘双双 邓仟 《新闻传播科学》 2024年第2期419-423,共5页
本文探讨了华为在全媒体创意策划方面的策略及其对品牌建设和市场营销的重要性。通过综合运用社交媒体、官网、移动应用等多种平台,华为实现了品牌信息的全球一致性传递与地方市场个性化营销的平衡。分析了华为如何通过全媒体策略加强... 本文探讨了华为在全媒体创意策划方面的策略及其对品牌建设和市场营销的重要性。通过综合运用社交媒体、官网、移动应用等多种平台,华为实现了品牌信息的全球一致性传递与地方市场个性化营销的平衡。分析了华为如何通过全媒体策略加强全球品牌影响力,特别是在保持品牌统一性、利用用户数据进行优化营销同时保护用户隐私,以及如何持续创造有吸引力的内容以避免用户疲劳方面的实践。本文为企业提供了如何提升品牌影响力的全媒体创意策略启示,展示了全媒体创意策划在现代营销中的有效性。 展开更多
关键词 华为 全媒体创意策略 品牌建设
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资源依赖与董事会结构——基于高校上市公司的研究 被引量:2
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作者 谭劲松 徐伟航 +1 位作者 秦帅 张安琪 《会计与经济研究》 CSSCI 北大核心 2019年第4期3-26,共24页
文章以高校上市公司为对象研究其董事会的形成及作用,结果表明母体高校利用自身资源优势而在附属上市公司占据超额董事席位,并为公司带来收益。具体表现为:(1)母体高校的声誉资源、政治资源和科技资源越丰富,其占据的超额董事席位就越多... 文章以高校上市公司为对象研究其董事会的形成及作用,结果表明母体高校利用自身资源优势而在附属上市公司占据超额董事席位,并为公司带来收益。具体表现为:(1)母体高校的声誉资源、政治资源和科技资源越丰富,其占据的超额董事席位就越多,这种正相关关系只显著存在于企业成长期和衰退期,在企业成熟期则不显著;(2)母体高校掌握稀缺性资源并据此占据超额董事席位的制度设计,有助于高校上市公司获得更多的银行贷款、承担更少的税负,且这一关系也仅在企业成长期和衰退期显著。 展开更多
关键词 资源依赖 企业生命周期 超额董事席位 高校上市公司
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水合肼分解产氢催化剂研究进展 被引量:6
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作者 张安琪 姚淇露 卢章辉 《化学学报》 SCIE CAS CSCD 北大核心 2021年第7期885-902,共18页
氢气作为21世纪最具发展前景的清洁能源,一直备受关注.寻找安全高效的储氢材料以转型到氢能社会是当前面临的最大挑战之一.水合肼(N_(2)H_(4))·H_(2)O)具有高含氢量(w=8.0%),完全分解产氢副产物仅为氮气和水,被视为一种极具应用潜... 氢气作为21世纪最具发展前景的清洁能源,一直备受关注.寻找安全高效的储氢材料以转型到氢能社会是当前面临的最大挑战之一.水合肼(N_(2)H_(4))·H_(2)O)具有高含氢量(w=8.0%),完全分解产氢副产物仅为氮气和水,被视为一种极具应用潜力的液相化学储氢材料.开发高效、高选择性的催化剂以催化水合肼完全分解,是研究水合肼分解产氢的关键.本综述总结了水合肼分解产氢催化剂的设计、合成及其催化性能.简要分析了肼分解的机理.此外,讨论了提高水合肼分解产氢催化剂的选择性和活性的策略,比如添加强碱助剂/碱性载体、形成合金、降低金属催化剂的结晶度、减小粒子尺寸、以及增强金属与载体相互作用.本研究进展可以为设计合成具有更高活性的氮基氢化物产氢催化剂提供指导和思路. 展开更多
关键词 化学储氢材料 水合肼 产氢 催化剂
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Osteoblast/fibroblast coculture derived bioactive ECM with unique matrisome profile facilitates bone regeneration 被引量:7
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作者 Mei Li anqi zhang +6 位作者 Jiajing Li Jing Zhou Yanan Zheng Chi zhang Dongdong Xia Haijiao Mao Jiyuan Zhao 《Bioactive Materials》 SCIE 2020年第4期938-948,共11页
Extracellular matrix(ECM)with mimetic tissue niches was attractive to facilitate tissue regeneration in situ via recruitment of endogenous cells and stimulation of self-healing process.However,how to engineer the comp... Extracellular matrix(ECM)with mimetic tissue niches was attractive to facilitate tissue regeneration in situ via recruitment of endogenous cells and stimulation of self-healing process.However,how to engineer the complicate tissue specific ECM with unique matrisome in vitro was a challenge of ECM-based biomaterials in tissue engineering and regenerative medicine.Here,we introduced coculture system to engineer bone mimetic ECM niche guided by cell-cell communication.In the cocultures,fibroblasts promoted osteogenic differentiation of osteoblasts via extracellular vesicles.The generated ECM(MN-ECM)displayed a unique appearance of morphology and biological components.The advantages of MN-ECM were demonstrated with promotion of multiple cellular behaviors(proliferation,adhesion and osteogenic mineralization)in vitro and bone regeneration in vivo.Moreover,proteomic analysis was used to clarify the molecular mechanism of MN-ECM,which revealed a specific matrisome signature.The present study provides a novel strategy to generate ECM with tissue mimetic niches via cell-cell communication in a coculture system,which forwards the development of tissue-bioactive ECM engineering along with deepening the understanding of ECM niches regulated by cells for bone tissue engineering. 展开更多
关键词 Cell coculture Bioactive ECM Matrisome Bone mimetic microenvironment Bone regeneration
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Biomimetic mineralized hybrid scaffolds with antimicrobial peptides 被引量:5
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作者 Zhou Ye Xiao Zhu +6 位作者 Isha Mutreja Sunil Kumar Bod Nicholas G.Fischer anqi zhang Christine Lui Yipin Qi Conrado Aparicio 《Bioactive Materials》 SCIE 2021年第8期2250-2260,共11页
Infection in hard tissue regeneration is a clinically-relevant challenge.Development of scaffolds with dual function for promoting bone/dental tissue growth and preventing bacterial infections is a critical need in th... Infection in hard tissue regeneration is a clinically-relevant challenge.Development of scaffolds with dual function for promoting bone/dental tissue growth and preventing bacterial infections is a critical need in the field.Here we fabricated hybrid scaffolds by intrafibrillar-mineralization of collagen using a biomimetic process and subsequently coating the scaffold with an antimicrobial designer peptide with cationic and amphipathic properties.The highly hydrophilic mineralized collagen scaffolds provided an ideal substrate to form a dense and stable coating of the antimicrobial peptides.The amount of hydroxyapatite in the mineralized fibers modulated the rheological behavior of the scaffolds with no influence on the amount of recruited peptides and the resulting increase in hydrophobicity.The developed scaffolds were potent by contact killing of Gram-negative Escherichia coli and Gram-positive Streptococcus gordonii as well as cytocompatible to human bone marrow-derived mesenchymal stromal cells.The process of scaffold fabrication is versatile and can be used to control mineral load and/or intrafibrillar-mineralized scaffolds made of other biopolymers. 展开更多
关键词 Biomimetic mineralization ANTIMICROBIAL Cationic and amphipathic peptides Hard tissue CYTOCOMPATIBILITY
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Transport property of topological crystalline insulator SnTe(100)and ferrimagnetic insulator heterostructures
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作者 anqi zhang Daheng Liu +2 位作者 Teng Yang Song Ma Zhidong zhang 《Journal of Materials Science & Technology》 SCIE EI CAS CSCD 2022年第36期204-211,共8页
Topological crystalline insulator(TCI)SnTe is a potential material for quantum electronic devices because of its attractive inherent sensitivity of band topology and highly mobile characteristic of Dirac fermions.The ... Topological crystalline insulator(TCI)SnTe is a potential material for quantum electronic devices because of its attractive inherent sensitivity of band topology and highly mobile characteristic of Dirac fermions.The proximity effect at the interface of SnTe film can affect the topological surface transport and may result in novel quantum magneto-electric effects.Here,we study the magnetoelectrical transport properties of SnTe thin films grown on ferrimagnetic insulators Eu_3Fe_5O_(12)(110)(EuIG(110))and Y_(3)Fe_(5)O_(12)(111)(YIG(111))single-crystal underlayers by molecular beam epitaxy.Linear magnetic resistance(LMR)is observed in SnTe/Eu IG heterostructures in the low field range,which is different from the weak antilocalization(WAL)characteristic of SnTe/YIG heterostructures.Especially,the double carrier characteristic with the coexistence of holes and electrons in SnTe/Eu IG heterostructure is quite different from the holes as main carriers in SnTe/YIG,although the SnTe layer remains the same crystal plane(100)in the two heterostructures.The LMR in SnTe/Eu IG is attributed to the topological surface Dirac electrons and disordered domain distribution in the SnTe layer which is in sharp contrast to the WAL of SnTe/YIG with ordered domain distribution in the SnTe layer.The present studies of transport properties not only provide a fundamental understanding of the transport mechanism of TCI and magnetite insulator heterostructure but also display the promising application probability for tunable topological electronic devices. 展开更多
关键词 Topological crystalline insulator Ferrimagnetic insulators Linear magnetoresistance Electrical transport Molecular beam epitaxy
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