BACKGROUND Perianal fistulising Crohn's disease(PFCD)and glandular anal fistula have many similarities on conventional magnetic resonance imaging.However,many patients with PFCD show concomitant active proctitis,b...BACKGROUND Perianal fistulising Crohn's disease(PFCD)and glandular anal fistula have many similarities on conventional magnetic resonance imaging.However,many patients with PFCD show concomitant active proctitis,but only few patients with glandular anal fistula have active proctitis.AIM To explore the value of differential diagnosis of PFCD and glandular anal fistula by comparing the textural feature parameters of the rectum and anal canal in fat suppression T2-weighted imaging(FS-T2WI).METHODS Patients with rectal water sac implantation were screened from the first part of this study(48 patients with PFCD and 22 patients with glandular anal fistula).Open-source software ITK-SNAP(Version 3.6.0,http://www.itksnap.org/)was used to delineate the region of interest(ROI)of the entire rectum and anal canal wall on every axial section,and then the ROIs were input in the Analysis Kit software(version V3.0.0.R,GE Healthcare)to calculate the textural feature parameters.Textural feature parameter differences of the rectum and anal canal wall between the PFCD group vs the glandular anal fistula group were analyzed using Mann-Whitney U test.The redundant textural parameters were screened by bivariate Spearman correlation analysis,and binary logistic regression analysis was used to establish the model of textural feature parameters.Finally,diagnostic accuracy was assessed by receiver operating characteristic-area under the curve(AUC)analysis.RESULTS In all,385 textural parameters were obtained,including 37 parameters with statistically significant differences between the PFCD and glandular anal fistula groups.Then,16 texture feature parameters remained after bivariate Spearman correlation analysis,including one histogram parameter(Histogram energy);four grey level co-occurrence matrix(GLCM)parameters(GLCM energy_all direction_offset1_SD,GLCM entropy_all direction_offset4_SD,GLCM entropy_all direction_offset7_SD,and Haralick correlation_all direction_offset7_SD);four texture parameters(Correlation_all direction_offset1_SD,cluster prominence_angle 90_offset4,Inertia_all direction_offset7_SD,and cluster shade_angle 45_offset7);five grey level run-length matrix parameters(grey level nonuniformity_angle 90_offset1,grey level nonuniformity_all direction_offset4_SD,long run high grey level emphasis_all direction_offset1_SD,long run emphasis_all direction_offset4_SD,and long run high grey level emphasis_all direction_offset4_SD);and two form factor parameters(surface area and maximum 3D diameter).The AUC,sensitivity,and specificity of the model of textural feature parameters were 0.917,85.42%,and 86.36%,respectively.CONCLUSION The model of textural feature parameters showed good diagnostic performance for PFCD.The texture feature parameters of the rectum and anal canal in FS-T2WI are helpful to distinguish PFCD from glandular anal fistula.展开更多
Cerasus serrulata is a flowering cherry germplasm resource for ornamental purposes.In this work,we present a de novo chromosome-scale genome assembly of C.serrulata by the use of Nanopore and Hi-C sequencing technolog...Cerasus serrulata is a flowering cherry germplasm resource for ornamental purposes.In this work,we present a de novo chromosome-scale genome assembly of C.serrulata by the use of Nanopore and Hi-C sequencing technologies.The assembled C.serrulata genome is 265.40 Mb across 304 contigs and 67 scaffolds,with a contig N50 of 1.56 Mb and a scaffold N50 of 31.12 Mb.It contains 29,094 coding genes,27,611(94.90%)of which are annotated in at least one functional database.Synteny analysis indicated that C.serrulata and C.avium have 333 syntenic blocks composed of 14,072 genes.Blocks on chromosome 01 of C.serrulata are distributed on all chromosomes of C.avium,implying that chromosome 01 is the most ancient or active of the chromosomes.The comparative genomic analysis confirmed that C.serrulata has 740 expanded gene families,1031 contracted gene families,and 228 rapidly evolving gene families.By the use of 656 single-copy orthologs,a phylogenetic tree composed of 10 species was constructed.The present C.serrulata species diverged from Prunus yedoensis~17.34 million years ago(Mya),while the divergence of C.serrulata and C.avium was estimated to have occurred∼21.44 Mya.In addition,a total of 148 MADS-box family gene members were identified in C.serrulata,accompanying the loss of the AGL32 subfamily and the expansion of the SVP subfamily.The MYB and WRKY gene families comprising 372 and 66 genes could be divided into seven and eight subfamilies in C.serrulata,respectively,based on clustering analysis.Nine hundred forty-one plant disease-resistance genes(R-genes)were detected by searching C.serrulata within the PRGdb.This research provides high-quality genomic information about C.serrulata as well as insights into the evolutionary history of Cerasus species.展开更多
Objective To compare the asbestos-induced DNA damage and repair capacities of DNA damage between 104 asbestos- exposed workers and 101 control workers in Qingdao City of China and to investigate the possible associati...Objective To compare the asbestos-induced DNA damage and repair capacities of DNA damage between 104 asbestos- exposed workers and 101 control workers in Qingdao City of China and to investigate the possible association between polymorphisms in codon 399 of XRCC1 and susceptibility to asbestosis. Methods DNA damage levels in peripheral blood lymphocytes were determined by comet assay, and XRCC1 genetic polymorphisms of DNA samples from 51 asbestosis cases and 53 non-asbestosis workers with a similar asbestos exposure history were analyzed by PCR/RFLP. Results The basal comet scores (3.95±2.95) were significantly higher in asbestos-exposed workers than in control workers (0.10±0.28). After 1 h H2O2 stimulation, DNA damage of lymphocytes exhibited different increases. After a 4 h repair period, the comet scores were 50.98±19.53 in asbestos-exposed workers and 18.32±12.04 in controls. The residual DNA damage (RD) was significantly greater (P<0.01) in asbestos-exposed workers (35.62%) than in controls (27.75%). XRCC1 genetic polymorphism in 104 asbestos-exposed workers was not associated with increased risk of asbestosis. But compared with polymorphisms in the DNA repair gene XRCC1 (polymorphisms in codon 399) and the DNA damage induced by asbestos, the comet scores in asbestosis cases with Gln/Gln, Gln/Arg, and Arg/Arg were 40.26±18.94, 38.03±28.22, and 32.01±11.65, respectively, which were higher than those in non-asbestosis workers with the same genotypes (25.58±11.08, 37.08±14.74, and 29.38±10.15). There were significant differences in the comet scores between asbestosis cases and non-asbestosis workers with Gln/Gln by Student’s t-test (P<0.05 or 0.01). The comet scores were higher in asbestosis workers with Gln/Gln than in those with Arg/Arg and in non-asbestosis workers exposed to asbestos, but without statistically significant difference. Conclusions Exposure to asbestos may be related to DNA damage or the capacity of cells to repair H2O2-induced DNA damage. DNA repair gene XRCC1 codon 399 may be responsible for the inter-individual susceptibility in DNA damage and repair capacities.展开更多
BACKGROUND Magnetic resonance imaging(MRI)is currently the standard investigation for suspected perianal diseases.Carcinoma arising from anal fistula is very rare,and early diagnosis is often difficult.AIM To describe...BACKGROUND Magnetic resonance imaging(MRI)is currently the standard investigation for suspected perianal diseases.Carcinoma arising from anal fistula is very rare,and early diagnosis is often difficult.AIM To describe and summarize the MRI findings of carcinoma arising from anal fistula.METHODS In this retrospective study,records of ten patients diagnosed with carcinoma arising from anal fistula and confirmed by surgery(n=7)or biopsy(n=3)between June 2006 and August 2018 were analyzed.All patients underwent preoperative pelvic MRI.Morphologic features,signal characteristics,fistula between the mass and the anus,contrast enhancement of mass,signal and enhancement of peritumoral areas,and regional lymphadenopathy were assessed.RESULTS All ten tumors were solitary(8 mucinous adenocarcinomas and 2 adenocarcinomas).The maximum diameter of the tumors ranged from 3.4 cm to 12.4 cm(median:4.15 cm;mean:5.68 cm).Eight patients had a fistula between the mass and the anus.Contrast enhancement of the peritumoral areas was noted in three(3/5)patients.Perirectal or inguinal lymphadenopathy was noted in seven patients.Most lesions of mucinous adenocarcinoma were multiloculated and cauliflower-like,with a thin capsule and focally unclear boundary.They were markedly hyperintense on fat-suppressed T2WI,slightly hyperintense with focal hyperintensity on diffusion-weighted imaging(DWI),and hyperintense with focal hypointensity on apparent diffusion coefficient(ADC)map,with progressive mesh-like contrast enhancement.Adenocarcinomas had an infiltrative margin without a capsule and appeared heterogeneously hyperintense or slightly hyperintense on fat-suppressed T2WI,hyperintense on DWI,and hypointense on ADC map,with persistent heterogeneous enhancement.CONCLUSION Our study highlighted several characteristic and potentially helpful MRI findings to diagnose carcinomas arising from anal fistula.展开更多
文摘BACKGROUND Perianal fistulising Crohn's disease(PFCD)and glandular anal fistula have many similarities on conventional magnetic resonance imaging.However,many patients with PFCD show concomitant active proctitis,but only few patients with glandular anal fistula have active proctitis.AIM To explore the value of differential diagnosis of PFCD and glandular anal fistula by comparing the textural feature parameters of the rectum and anal canal in fat suppression T2-weighted imaging(FS-T2WI).METHODS Patients with rectal water sac implantation were screened from the first part of this study(48 patients with PFCD and 22 patients with glandular anal fistula).Open-source software ITK-SNAP(Version 3.6.0,http://www.itksnap.org/)was used to delineate the region of interest(ROI)of the entire rectum and anal canal wall on every axial section,and then the ROIs were input in the Analysis Kit software(version V3.0.0.R,GE Healthcare)to calculate the textural feature parameters.Textural feature parameter differences of the rectum and anal canal wall between the PFCD group vs the glandular anal fistula group were analyzed using Mann-Whitney U test.The redundant textural parameters were screened by bivariate Spearman correlation analysis,and binary logistic regression analysis was used to establish the model of textural feature parameters.Finally,diagnostic accuracy was assessed by receiver operating characteristic-area under the curve(AUC)analysis.RESULTS In all,385 textural parameters were obtained,including 37 parameters with statistically significant differences between the PFCD and glandular anal fistula groups.Then,16 texture feature parameters remained after bivariate Spearman correlation analysis,including one histogram parameter(Histogram energy);four grey level co-occurrence matrix(GLCM)parameters(GLCM energy_all direction_offset1_SD,GLCM entropy_all direction_offset4_SD,GLCM entropy_all direction_offset7_SD,and Haralick correlation_all direction_offset7_SD);four texture parameters(Correlation_all direction_offset1_SD,cluster prominence_angle 90_offset4,Inertia_all direction_offset7_SD,and cluster shade_angle 45_offset7);five grey level run-length matrix parameters(grey level nonuniformity_angle 90_offset1,grey level nonuniformity_all direction_offset4_SD,long run high grey level emphasis_all direction_offset1_SD,long run emphasis_all direction_offset4_SD,and long run high grey level emphasis_all direction_offset4_SD);and two form factor parameters(surface area and maximum 3D diameter).The AUC,sensitivity,and specificity of the model of textural feature parameters were 0.917,85.42%,and 86.36%,respectively.CONCLUSION The model of textural feature parameters showed good diagnostic performance for PFCD.The texture feature parameters of the rectum and anal canal in FS-T2WI are helpful to distinguish PFCD from glandular anal fistula.
基金supported by grants from the Science Foundation of Jiangsu Province,China(BE2017037)the Forestry Science and Technology Innovation and Popularization Project in Jiangsu Province,China(LYKJ[2017]14,LYKJ[2018]29,LYKJ[2018]43).
文摘Cerasus serrulata is a flowering cherry germplasm resource for ornamental purposes.In this work,we present a de novo chromosome-scale genome assembly of C.serrulata by the use of Nanopore and Hi-C sequencing technologies.The assembled C.serrulata genome is 265.40 Mb across 304 contigs and 67 scaffolds,with a contig N50 of 1.56 Mb and a scaffold N50 of 31.12 Mb.It contains 29,094 coding genes,27,611(94.90%)of which are annotated in at least one functional database.Synteny analysis indicated that C.serrulata and C.avium have 333 syntenic blocks composed of 14,072 genes.Blocks on chromosome 01 of C.serrulata are distributed on all chromosomes of C.avium,implying that chromosome 01 is the most ancient or active of the chromosomes.The comparative genomic analysis confirmed that C.serrulata has 740 expanded gene families,1031 contracted gene families,and 228 rapidly evolving gene families.By the use of 656 single-copy orthologs,a phylogenetic tree composed of 10 species was constructed.The present C.serrulata species diverged from Prunus yedoensis~17.34 million years ago(Mya),while the divergence of C.serrulata and C.avium was estimated to have occurred∼21.44 Mya.In addition,a total of 148 MADS-box family gene members were identified in C.serrulata,accompanying the loss of the AGL32 subfamily and the expansion of the SVP subfamily.The MYB and WRKY gene families comprising 372 and 66 genes could be divided into seven and eight subfamilies in C.serrulata,respectively,based on clustering analysis.Nine hundred forty-one plant disease-resistance genes(R-genes)were detected by searching C.serrulata within the PRGdb.This research provides high-quality genomic information about C.serrulata as well as insights into the evolutionary history of Cerasus species.
基金This study was supported by a grant from National Natural Science Foundation of China (No. 30100147).
文摘Objective To compare the asbestos-induced DNA damage and repair capacities of DNA damage between 104 asbestos- exposed workers and 101 control workers in Qingdao City of China and to investigate the possible association between polymorphisms in codon 399 of XRCC1 and susceptibility to asbestosis. Methods DNA damage levels in peripheral blood lymphocytes were determined by comet assay, and XRCC1 genetic polymorphisms of DNA samples from 51 asbestosis cases and 53 non-asbestosis workers with a similar asbestos exposure history were analyzed by PCR/RFLP. Results The basal comet scores (3.95±2.95) were significantly higher in asbestos-exposed workers than in control workers (0.10±0.28). After 1 h H2O2 stimulation, DNA damage of lymphocytes exhibited different increases. After a 4 h repair period, the comet scores were 50.98±19.53 in asbestos-exposed workers and 18.32±12.04 in controls. The residual DNA damage (RD) was significantly greater (P<0.01) in asbestos-exposed workers (35.62%) than in controls (27.75%). XRCC1 genetic polymorphism in 104 asbestos-exposed workers was not associated with increased risk of asbestosis. But compared with polymorphisms in the DNA repair gene XRCC1 (polymorphisms in codon 399) and the DNA damage induced by asbestos, the comet scores in asbestosis cases with Gln/Gln, Gln/Arg, and Arg/Arg were 40.26±18.94, 38.03±28.22, and 32.01±11.65, respectively, which were higher than those in non-asbestosis workers with the same genotypes (25.58±11.08, 37.08±14.74, and 29.38±10.15). There were significant differences in the comet scores between asbestosis cases and non-asbestosis workers with Gln/Gln by Student’s t-test (P<0.05 or 0.01). The comet scores were higher in asbestosis workers with Gln/Gln than in those with Arg/Arg and in non-asbestosis workers exposed to asbestos, but without statistically significant difference. Conclusions Exposure to asbestos may be related to DNA damage or the capacity of cells to repair H2O2-induced DNA damage. DNA repair gene XRCC1 codon 399 may be responsible for the inter-individual susceptibility in DNA damage and repair capacities.
文摘BACKGROUND Magnetic resonance imaging(MRI)is currently the standard investigation for suspected perianal diseases.Carcinoma arising from anal fistula is very rare,and early diagnosis is often difficult.AIM To describe and summarize the MRI findings of carcinoma arising from anal fistula.METHODS In this retrospective study,records of ten patients diagnosed with carcinoma arising from anal fistula and confirmed by surgery(n=7)or biopsy(n=3)between June 2006 and August 2018 were analyzed.All patients underwent preoperative pelvic MRI.Morphologic features,signal characteristics,fistula between the mass and the anus,contrast enhancement of mass,signal and enhancement of peritumoral areas,and regional lymphadenopathy were assessed.RESULTS All ten tumors were solitary(8 mucinous adenocarcinomas and 2 adenocarcinomas).The maximum diameter of the tumors ranged from 3.4 cm to 12.4 cm(median:4.15 cm;mean:5.68 cm).Eight patients had a fistula between the mass and the anus.Contrast enhancement of the peritumoral areas was noted in three(3/5)patients.Perirectal or inguinal lymphadenopathy was noted in seven patients.Most lesions of mucinous adenocarcinoma were multiloculated and cauliflower-like,with a thin capsule and focally unclear boundary.They were markedly hyperintense on fat-suppressed T2WI,slightly hyperintense with focal hyperintensity on diffusion-weighted imaging(DWI),and hyperintense with focal hypointensity on apparent diffusion coefficient(ADC)map,with progressive mesh-like contrast enhancement.Adenocarcinomas had an infiltrative margin without a capsule and appeared heterogeneously hyperintense or slightly hyperintense on fat-suppressed T2WI,hyperintense on DWI,and hypointense on ADC map,with persistent heterogeneous enhancement.CONCLUSION Our study highlighted several characteristic and potentially helpful MRI findings to diagnose carcinomas arising from anal fistula.
