Sesame is an ancient oilseed crop with high oil content and quality.However,the evolutionary history and genetic mechanisms of its valuable agronomic traits remain unclear.Here,we report chromosome-scale genomes of cu...Sesame is an ancient oilseed crop with high oil content and quality.However,the evolutionary history and genetic mechanisms of its valuable agronomic traits remain unclear.Here,we report chromosome-scale genomes of cultivated sesame(Sesamum indicum L.)and six wild Sesamum species,representing all three karyotypes within this genus.Karyotyping and genome-based phylogenic analysis revealed the evolutionary route of Sesamum species from n=13 to n=16 and revealed that allotetraploidization occurred in the wild species Sesamum radiatum.Early divergence of the Sesamum genus(48.5–19.7 million years ago)during the Tertiary period and its ancient phylogenic position within eudicots were observed.Pan-genome analysis revealed 9164 core gene families in the 7Sesamumspecies.These families are significantly enriched in variousmetabolic pathways,including fatty acid(FA)metabolism and FA biosynthesis.Structural variations in SiPT1 and SiDT1 within the phosphatidyl ethanolamine-binding protein gene family lead to the genomic evolution of plant-architecture and inflorescence-development phenotypes in Sesamum.A genome-wide association study(GWAS)of an interspecific population and genome comparisons revealed a long terminal repeat insertion and a sequence deletion inDIR genes of wildSesamum angustifoliumand cultivated sesame,respectively;both variations independently cause high susceptibility toFusariumwilt disease.A GWAS of 560 sesame accessions combined with an overexpression study confirmed that the NAC1andPPOgenes play an important role in upregulating oil content of sesame.Our study provides high-quality genomic resources for cultivated and wild Sesamum species and insights that can improve molecular breeding strategies for sesame and other oilseed crops.展开更多
基金supported by earmarked funding for the China Agricultural Research System of MOF and MARA (CARS-14),Chinathe China National"973"Project (2011CB109304),China+5 种基金the Henan Zhongyuan Scientist Work Station Construction Fund (092101211100),Chinathe National Natural Science Foundation of China (U1204318,U1304321,31301653,31471537,and 32172094),Chinathe Key Project of Science and Technology of Henan Province (201300110600),Chinathe Key Research Project of the Shennong Laboratory (SN01-2022-04),Chinathe Key Research and Development Project of Henan Province (221111520400),Chinathe Innovation Scientists and Technicians Troop Construction Project of the Henan Academy of Agricultural Sciences (2023TD04),China.
文摘Sesame is an ancient oilseed crop with high oil content and quality.However,the evolutionary history and genetic mechanisms of its valuable agronomic traits remain unclear.Here,we report chromosome-scale genomes of cultivated sesame(Sesamum indicum L.)and six wild Sesamum species,representing all three karyotypes within this genus.Karyotyping and genome-based phylogenic analysis revealed the evolutionary route of Sesamum species from n=13 to n=16 and revealed that allotetraploidization occurred in the wild species Sesamum radiatum.Early divergence of the Sesamum genus(48.5–19.7 million years ago)during the Tertiary period and its ancient phylogenic position within eudicots were observed.Pan-genome analysis revealed 9164 core gene families in the 7Sesamumspecies.These families are significantly enriched in variousmetabolic pathways,including fatty acid(FA)metabolism and FA biosynthesis.Structural variations in SiPT1 and SiDT1 within the phosphatidyl ethanolamine-binding protein gene family lead to the genomic evolution of plant-architecture and inflorescence-development phenotypes in Sesamum.A genome-wide association study(GWAS)of an interspecific population and genome comparisons revealed a long terminal repeat insertion and a sequence deletion inDIR genes of wildSesamum angustifoliumand cultivated sesame,respectively;both variations independently cause high susceptibility toFusariumwilt disease.A GWAS of 560 sesame accessions combined with an overexpression study confirmed that the NAC1andPPOgenes play an important role in upregulating oil content of sesame.Our study provides high-quality genomic resources for cultivated and wild Sesamum species and insights that can improve molecular breeding strategies for sesame and other oilseed crops.
