目的建立m6A特异性烯丙基标记测序(m6A-selective allyl chemical labeling and sequencing,m6A-SAC-seq)实验方法体系,在单核苷酸分辨率水平对RNA的N6-甲基腺苷(m6A)修饰进行检测。方法m6A烯丙基标记测序(m6A-SAC-seq)使用特异性甲基...目的建立m6A特异性烯丙基标记测序(m6A-selective allyl chemical labeling and sequencing,m6A-SAC-seq)实验方法体系,在单核苷酸分辨率水平对RNA的N6-甲基腺苷(m6A)修饰进行检测。方法m6A烯丙基标记测序(m6A-SAC-seq)使用特异性甲基转移酶MjDim1对m6A添加烯丙基标记成为N6-烯丙基-甲基腺苷(am6A),使用I2处理产生N1,N6-环化腺苷(A)产物,在逆转录时引入突变,从而实现在单核苷酸分辨率水平的检测。通过HPLC法纯化甲基转移酶MjDim1,使用探针及液相色谱-质谱联用系统(LC-MS/MS)检测m6A的转换率,计算MjDim1活性作为质控。提取样品RNA,用烯丙基标记m6A,并用m6A-SAC-seq技术构建文库,测序后通过数据分析得到m6A位点信息,通过标准曲线校准计算得到m6A的含量。结果m6A-SAC-seq处理后,HIV逆转录酶识别环化的am6A位点,引入突变,但附近未修饰位点不发生突变。通过特定的A突变成T/C的突变位置(A to T/C)来识别m6A位点,并添加内参探针,用标准曲线来定量m6A含量。结论m6A-SAC-seq技术仅需30 ng的mRNA或去除了rRNA的总RNA样本就可以实现m6A位点在单核苷酸分辨率水平的检测。展开更多
The authors want to changed the web link of the software platform in this Briefing.Page 97,section 'INTRODUCTION',the web link of SHEsis is changed from http://www.nhgg.org/analysis tohttp://analysis.bio-x.
PCR has been a general preferred method for biological research in fish,and previous research have enabled us to extract and purify PCR-quality DNA templates in laboratories [1-4].The same problem among these procedur...PCR has been a general preferred method for biological research in fish,and previous research have enabled us to extract and purify PCR-quality DNA templates in laboratories [1-4].The same problem among these procedures is waiting for tissue digesting for a long time.The overabundance time spent on PCR-quality DNA extraction restricts the efficiency of PCR assay,especially in large-scale PCR amplification,such as SSR-based genetic-mapping construction [5,6],identification of germ plasm resource[7,8] and evolution research [9,10],etc.In this study,a stable and rapid PCR-quality DNA extraction method was explored,using a modified alkaline lysis protocol.Extracting DNA for PCR only takes approximately 25 minutes.This stable and rapid DNA extraction method could save much laboratory time and promotes.展开更多
为了实现提高产量和抵抗病害等能力的目的,需要提高育种水平,通过设计交差验证(Cross-Validation)实验进行大豆基因型和表型数据的分组处理,根据数据的个体和mark的数量进行合理分配,采用gBLUP(genomic Best Linear Unbiased Prediction...为了实现提高产量和抵抗病害等能力的目的,需要提高育种水平,通过设计交差验证(Cross-Validation)实验进行大豆基因型和表型数据的分组处理,根据数据的个体和mark的数量进行合理分配,采用gBLUP(genomic Best Linear Unbiased Prediction)方法进行表型预测。根据对大豆数据多个性状通过不同分组的对比来得到精确值的范围,为后续的育种分析提供依据。对于只有大豆基因型数据而没有表型数据的情况,需要模拟表型,根据设定遗传力和模拟位点的个数(NQTN)进行模拟,然后再进行不同分组获取精准值,这样扩大了大豆数据的预测灵活性。展开更多
The application of keV ion beam in life science started in China several decades ago. In 1986, researchers initially studied the mutagenic effect of ion beam, and successfully applied it to plant breeding. Nowadays, i...The application of keV ion beam in life science started in China several decades ago. In 1986, researchers initially studied the mutagenic effect of ion beam, and successfully applied it to plant breeding. Nowadays, ion beam implantation technique has been extensively applied to many biological fields. This paper mainly introduces one of its important applications: genetic transformation mediated by keV ion beam.展开更多
文摘目的建立m6A特异性烯丙基标记测序(m6A-selective allyl chemical labeling and sequencing,m6A-SAC-seq)实验方法体系,在单核苷酸分辨率水平对RNA的N6-甲基腺苷(m6A)修饰进行检测。方法m6A烯丙基标记测序(m6A-SAC-seq)使用特异性甲基转移酶MjDim1对m6A添加烯丙基标记成为N6-烯丙基-甲基腺苷(am6A),使用I2处理产生N1,N6-环化腺苷(A)产物,在逆转录时引入突变,从而实现在单核苷酸分辨率水平的检测。通过HPLC法纯化甲基转移酶MjDim1,使用探针及液相色谱-质谱联用系统(LC-MS/MS)检测m6A的转换率,计算MjDim1活性作为质控。提取样品RNA,用烯丙基标记m6A,并用m6A-SAC-seq技术构建文库,测序后通过数据分析得到m6A位点信息,通过标准曲线校准计算得到m6A的含量。结果m6A-SAC-seq处理后,HIV逆转录酶识别环化的am6A位点,引入突变,但附近未修饰位点不发生突变。通过特定的A突变成T/C的突变位置(A to T/C)来识别m6A位点,并添加内参探针,用标准曲线来定量m6A含量。结论m6A-SAC-seq技术仅需30 ng的mRNA或去除了rRNA的总RNA样本就可以实现m6A位点在单核苷酸分辨率水平的检测。
文摘The authors want to changed the web link of the software platform in this Briefing.Page 97,section 'INTRODUCTION',the web link of SHEsis is changed from http://www.nhgg.org/analysis tohttp://analysis.bio-x.
基金Special Fund for Agro-scientific Research in the Public Interest:200903045Natural Science Foundation of China:31101894
文摘PCR has been a general preferred method for biological research in fish,and previous research have enabled us to extract and purify PCR-quality DNA templates in laboratories [1-4].The same problem among these procedures is waiting for tissue digesting for a long time.The overabundance time spent on PCR-quality DNA extraction restricts the efficiency of PCR assay,especially in large-scale PCR amplification,such as SSR-based genetic-mapping construction [5,6],identification of germ plasm resource[7,8] and evolution research [9,10],etc.In this study,a stable and rapid PCR-quality DNA extraction method was explored,using a modified alkaline lysis protocol.Extracting DNA for PCR only takes approximately 25 minutes.This stable and rapid DNA extraction method could save much laboratory time and promotes.
文摘为了实现提高产量和抵抗病害等能力的目的,需要提高育种水平,通过设计交差验证(Cross-Validation)实验进行大豆基因型和表型数据的分组处理,根据数据的个体和mark的数量进行合理分配,采用gBLUP(genomic Best Linear Unbiased Prediction)方法进行表型预测。根据对大豆数据多个性状通过不同分组的对比来得到精确值的范围,为后续的育种分析提供依据。对于只有大豆基因型数据而没有表型数据的情况,需要模拟表型,根据设定遗传力和模拟位点的个数(NQTN)进行模拟,然后再进行不同分组获取精准值,这样扩大了大豆数据的预测灵活性。
文摘The application of keV ion beam in life science started in China several decades ago. In 1986, researchers initially studied the mutagenic effect of ion beam, and successfully applied it to plant breeding. Nowadays, ion beam implantation technique has been extensively applied to many biological fields. This paper mainly introduces one of its important applications: genetic transformation mediated by keV ion beam.
