Species in genus Nannochloropsis,especially N.oceanica and N.gaditana,have been evolving as the model microalgae for both application and theory studies.The position effect of genome integration,the carrying capabilit...Species in genus Nannochloropsis,especially N.oceanica and N.gaditana,have been evolving as the model microalgae for both application and theory studies.The position effect of genome integration,the carrying capability limitation of integrative vectors and the instability of non-integrative vectors have hindered Nannochloropsis genetic modification with concatenate genes and extremely long DNA fragments.The molecular tools including genetic transformation,homologous recombination,gene edition,gene stacking and episome vectors for transient gene expression and diverse reporters and selection markers have been rapidly developing in Nannochloropsis species.The construction of animal and plant artificial chromosomes with“top down”strategy has set fine examples for the construction of Nannochloropsis artificial chromosomes(NannoACs).It seems that the methods and materials to set the foundation for constructing NannoACs are at hands.In this review,we outlined the current status of transgenes in Nannochloropsis species,summarized the limitations of both integrative and non-integrative vectors,and proposed a tentative approach to construct NannoACs by doubling and stabilizing the genome first,and then truncating the natural chromosomes.NannoACs once constructed will facilitate transferring the desired traits and concatenate genes into Nannochloropsis genetic backgrounds,thus contributing towards its genetic improvement and synthetic biological studies.展开更多
Three polyamines(PAs)(spermidine(Spd),spermine(Spm),and putrescine(Put))were used as growth regulators to the marine macroalgae Gracilariopsis lemaneiformis and to female gametophyte and reproductive tissues(cystocarp...Three polyamines(PAs)(spermidine(Spd),spermine(Spm),and putrescine(Put))were used as growth regulators to the marine macroalgae Gracilariopsis lemaneiformis and to female gametophyte and reproductive tissues(cystocarps were constructed),which led to early maturation of cystocarps and spore release.Laboratory cultivation revealed that exogenous PA application accelerated the development of cystocarps,and the mean sporeling growth rate was 20%–50%/d during the initial week of cultivation.The spore count(SC),survival rate(SR),and germination rate(GR)of G.lemaneiformis showed different responses to PA(10-6 mol/L and 10-3 mol/L)treatments under different temperatures(18,26,and 34℃),light intensities(30,60,and 90μmol photons/(m^(2)·s)),salinities(25,30,and 35),and nutrient levels(25꞉2.5,50꞉5.0,and 75꞉7.5μmol/L NH4Cl꞉K2HPO4),and the optimal conditions were 26℃,light intensity of 60μmol/(m^(2)·s),salinity of 35,and nutrient level of 50꞉5.0μmol/L NH4Cl꞉K2HPO4.Under the optimum conditions,the SC per cystocarp increased by 82.38%,and the spore SR and GR increased by 33.07%and 46.44%,respectively.Each experiment lasted for 7 days,with the highest SC on Day 4 and plateauing on Day 7.The results indicate that PAs could promote the early maturation,spore release,survival,and germination of G.lemaneiformis under laboratory conditions.展开更多
Long non-coding RNAs(lncRNAs)regulate a variety of biological processes,including sexual reproduction and differentiation.Saccharina japonica,a commercially important brown alga in China,shows remarkable sexual dimorp...Long non-coding RNAs(lncRNAs)regulate a variety of biological processes,including sexual reproduction and differentiation.Saccharina japonica,a commercially important brown alga in China,shows remarkable sexual dimorphism in haploid gametophytes.The sex of Saccharina japonica gametophytes is determined by UV sexual system.However,no results have been reported on the lncRNAs involved in the sex-related gene regulation of S.japonica.This study identified a number of lncRNAs and assessed their expression levels in male and female gametophytes.Among them,a total of 405 lncRNAs and 211 mRNAs showed differential expressions.Furthermore,the functions of target genes of differentially expressed lncRNAs(DELs)differed from those of differentially expressed genes(DEGs),suggesting that lncRNA may interact with other functional proteins,in addition to DEGs,to involve sex regulation in S.japonica.There were 32 and 90 potential cis-regulatory and trans-regulatory interactions between DELsDEGs,respectively.Five of these lncRNAs(LNC_002974,LNC_021059,LNC_038466,LNC_051584,and LNC_027400)interacted with putative male sex determination region(SDR)genes,suggesting that they act as regulators in gametophytes'sex regulation potentially.Findings from this study contribute to our understanding of the roles of lncRNAs in sex differentiation and lay the foundation for functional studies of candidate lncRNAs in the future.展开更多
A sulfated galactoftucan designated as UpG was obtained from the brown algae Undaria pinnatifida by calcium chloride extraction.Chemical analyses showed that UpG is composed of galactose and fucose at a high sulfation...A sulfated galactoftucan designated as UpG was obtained from the brown algae Undaria pinnatifida by calcium chloride extraction.Chemical analyses showed that UpG is composed of galactose and fucose at a high sulfation level.Low-molecular weight UpGP-0.5 was prepared from UpG through acid hydrolysis for structure characterization.The backbones of UpG are determined to beα-(1,3)-Fuc,α-(1,4)-Gal,α-(1,3)-Gal,andα-(1,6)-Gal by GC-MS,FT-IR,NMR,and LC-MS analyses.Sulfate groups are modified at C2 and/or C4 of fucose and C3 and/or C4 of galactose.UpG could partially lower blood sugar and serum lipid levels in type 2 diabetic mice.Moreover,UpG treatment regulates the abundance of some specific gut microbiota,such as enriching the abundance of Muribaculum and Christensenellaceae,and reducing that of Bilophila,Tannerellaceae,Candidatus Saccharimonas and Anaerotruncus.The findings characterized the detailed structure of a sulfated galactofucan and investigated its potential for the treatment of type 2 diabetes mellitus.展开更多
Alexandrium minutum from the China Sea produces a range of toxins and causes damage to the local ecosystems and aquaculture.This is essential to understand environmental factors affecting potential distribution.Potent...Alexandrium minutum from the China Sea produces a range of toxins and causes damage to the local ecosystems and aquaculture.This is essential to understand environmental factors affecting potential distribution.Potential distributions of A.minutum in the China Sea were predicted based on maximum entropy modeling,and dominant environmental variables were studied through analyses of variable contributions and response curves.The results showed that highly suitable areas were mainly located in the southwest of the Yellow Sea,the Laizhou Bay,and north of Haizhou Bay.The coast of the South China Sea was predicted as a low-suitability area,and the coast of the East China Sea as an unsuitable area.Mean temperature of the coldest month(T_min)had the largest drop in permutation importance but a low percent contribution.The probability of presence of A.minutum increased with increasing concentration of nitrate(NO3−)and annual mean temperature(T_ann)over a wide range of them.The response curves decreased with increasing concentration of phosphate(PO43−)and ratio of NO_(3)^(−)to PO_(4)^(3−)(N_P_ratio)when PO_(4)^(3)−is above 0.049μmolL^(-1) and N_P_ratio above 4,indicating that low values of PO_(4)^(3−) concentration and N_P_ratio favour the occurrence of A.minutum.As a predictor,the variance of annual temperature(T_Var)had the highest percent contribution and gains.PO_(4)^(3−) was predicted to have much more information than the other variables,and exhibited the second largest drop in permutation importance and percent contribution.The T_Var and PO_(4)^(3−) are the most important dominant predictor variables.展开更多
Laminarinases reveal potential application in the field of food and biotechnology.In this research,a novel GH16 family laminarinase,designated as Lam16A_Wa,was cloned from the genome of marine bacterium Wenyingzhuangi...Laminarinases reveal potential application in the field of food and biotechnology.In this research,a novel GH16 family laminarinase,designated as Lam16A_Wa,was cloned from the genome of marine bacterium Wenyingzhuangia aestuarii OF219 and expressed in Escherichia coli.Lam16A_Wa demonstrates a relatively low optimal reaction temperature(35℃)and a cold-adapted feature.Its optimal pH value is 6.0 and is stable in a broad pH range from 3.0 to 11.0.A glycomics strategy was employed to investigate the hydrolytic pattern of Lam16A_Wa.The enzyme was confirmed as a random endo-acting glycoside hydrolase.Its minimum substrate was laminarin pentasaccharide,and the major final products are oligosaccharides,including disaccharide to pentasaccharide.The Lam16A_Wa provides a novel and well-defined tool for the molecular tailoring of laminarin.展开更多
基金Supported by the National Key R&D Program of China(Nos.2018YFD0901506,2018YFD0900305)the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology(Qingdao)(No.2018 SDKJ0406-3)。
文摘Species in genus Nannochloropsis,especially N.oceanica and N.gaditana,have been evolving as the model microalgae for both application and theory studies.The position effect of genome integration,the carrying capability limitation of integrative vectors and the instability of non-integrative vectors have hindered Nannochloropsis genetic modification with concatenate genes and extremely long DNA fragments.The molecular tools including genetic transformation,homologous recombination,gene edition,gene stacking and episome vectors for transient gene expression and diverse reporters and selection markers have been rapidly developing in Nannochloropsis species.The construction of animal and plant artificial chromosomes with“top down”strategy has set fine examples for the construction of Nannochloropsis artificial chromosomes(NannoACs).It seems that the methods and materials to set the foundation for constructing NannoACs are at hands.In this review,we outlined the current status of transgenes in Nannochloropsis species,summarized the limitations of both integrative and non-integrative vectors,and proposed a tentative approach to construct NannoACs by doubling and stabilizing the genome first,and then truncating the natural chromosomes.NannoACs once constructed will facilitate transferring the desired traits and concatenate genes into Nannochloropsis genetic backgrounds,thus contributing towards its genetic improvement and synthetic biological studies.
基金Supported by the National Key R&D Program of China(No.2018YFD0901502)the Ningbo Key R&D Science and Technology Program(Nos.2019B10009,2021Z114)the Natural Science Foundation of Zhejiang Province(Nos.LY19C190003,LQ20C190002)。
文摘Three polyamines(PAs)(spermidine(Spd),spermine(Spm),and putrescine(Put))were used as growth regulators to the marine macroalgae Gracilariopsis lemaneiformis and to female gametophyte and reproductive tissues(cystocarps were constructed),which led to early maturation of cystocarps and spore release.Laboratory cultivation revealed that exogenous PA application accelerated the development of cystocarps,and the mean sporeling growth rate was 20%–50%/d during the initial week of cultivation.The spore count(SC),survival rate(SR),and germination rate(GR)of G.lemaneiformis showed different responses to PA(10-6 mol/L and 10-3 mol/L)treatments under different temperatures(18,26,and 34℃),light intensities(30,60,and 90μmol photons/(m^(2)·s)),salinities(25,30,and 35),and nutrient levels(25꞉2.5,50꞉5.0,and 75꞉7.5μmol/L NH4Cl꞉K2HPO4),and the optimal conditions were 26℃,light intensity of 60μmol/(m^(2)·s),salinity of 35,and nutrient level of 50꞉5.0μmol/L NH4Cl꞉K2HPO4.Under the optimum conditions,the SC per cystocarp increased by 82.38%,and the spore SR and GR increased by 33.07%and 46.44%,respectively.Each experiment lasted for 7 days,with the highest SC on Day 4 and plateauing on Day 7.The results indicate that PAs could promote the early maturation,spore release,survival,and germination of G.lemaneiformis under laboratory conditions.
基金supported by the National Natural Science Foundation of China(No.132072962)the Agricultural Industrial Technology System in Shandong Province(No.SDAIT-26)+3 种基金the‘First Class Fishery Discipline’Programme[(2020)3]in Shandong Provincethe Special Talent Programme‘Yishi Yiyi’in Shandong Province,Chinathe National Key R&D Program of China(No.2018YFD0901500)the Shandong Province Agriculture Seed Project(No.2021LZ GC004)。
文摘Long non-coding RNAs(lncRNAs)regulate a variety of biological processes,including sexual reproduction and differentiation.Saccharina japonica,a commercially important brown alga in China,shows remarkable sexual dimorphism in haploid gametophytes.The sex of Saccharina japonica gametophytes is determined by UV sexual system.However,no results have been reported on the lncRNAs involved in the sex-related gene regulation of S.japonica.This study identified a number of lncRNAs and assessed their expression levels in male and female gametophytes.Among them,a total of 405 lncRNAs and 211 mRNAs showed differential expressions.Furthermore,the functions of target genes of differentially expressed lncRNAs(DELs)differed from those of differentially expressed genes(DEGs),suggesting that lncRNA may interact with other functional proteins,in addition to DEGs,to involve sex regulation in S.japonica.There were 32 and 90 potential cis-regulatory and trans-regulatory interactions between DELsDEGs,respectively.Five of these lncRNAs(LNC_002974,LNC_021059,LNC_038466,LNC_051584,and LNC_027400)interacted with putative male sex determination region(SDR)genes,suggesting that they act as regulators in gametophytes'sex regulation potentially.Findings from this study contribute to our understanding of the roles of lncRNAs in sex differentiation and lay the foundation for functional studies of candidate lncRNAs in the future.
基金Supported by the National Key Research and Development Program(Nos.2018YFC0311003,2017YFE0103100)the National Natural Science Foundation of China(Nos.81903534,81773628,81741165)the HighLevel Talent Special Support Plan of Zhejiang Province(No.2019R52009)。
文摘A sulfated galactoftucan designated as UpG was obtained from the brown algae Undaria pinnatifida by calcium chloride extraction.Chemical analyses showed that UpG is composed of galactose and fucose at a high sulfation level.Low-molecular weight UpGP-0.5 was prepared from UpG through acid hydrolysis for structure characterization.The backbones of UpG are determined to beα-(1,3)-Fuc,α-(1,4)-Gal,α-(1,3)-Gal,andα-(1,6)-Gal by GC-MS,FT-IR,NMR,and LC-MS analyses.Sulfate groups are modified at C2 and/or C4 of fucose and C3 and/or C4 of galactose.UpG could partially lower blood sugar and serum lipid levels in type 2 diabetic mice.Moreover,UpG treatment regulates the abundance of some specific gut microbiota,such as enriching the abundance of Muribaculum and Christensenellaceae,and reducing that of Bilophila,Tannerellaceae,Candidatus Saccharimonas and Anaerotruncus.The findings characterized the detailed structure of a sulfated galactofucan and investigated its potential for the treatment of type 2 diabetes mellitus.
基金supported by the National Key Research and the Development Program of China(No.2019YFE 0124700)the China National Key Research and Development Program(No.2022YFC3106002)+1 种基金the National Natural Science Foundation of China(No.U1901215)the Startup Foundation for Introducing Talent of NUIST(No.2020r028).
文摘Alexandrium minutum from the China Sea produces a range of toxins and causes damage to the local ecosystems and aquaculture.This is essential to understand environmental factors affecting potential distribution.Potential distributions of A.minutum in the China Sea were predicted based on maximum entropy modeling,and dominant environmental variables were studied through analyses of variable contributions and response curves.The results showed that highly suitable areas were mainly located in the southwest of the Yellow Sea,the Laizhou Bay,and north of Haizhou Bay.The coast of the South China Sea was predicted as a low-suitability area,and the coast of the East China Sea as an unsuitable area.Mean temperature of the coldest month(T_min)had the largest drop in permutation importance but a low percent contribution.The probability of presence of A.minutum increased with increasing concentration of nitrate(NO3−)and annual mean temperature(T_ann)over a wide range of them.The response curves decreased with increasing concentration of phosphate(PO43−)and ratio of NO_(3)^(−)to PO_(4)^(3−)(N_P_ratio)when PO_(4)^(3)−is above 0.049μmolL^(-1) and N_P_ratio above 4,indicating that low values of PO_(4)^(3−) concentration and N_P_ratio favour the occurrence of A.minutum.As a predictor,the variance of annual temperature(T_Var)had the highest percent contribution and gains.PO_(4)^(3−) was predicted to have much more information than the other variables,and exhibited the second largest drop in permutation importance and percent contribution.The T_Var and PO_(4)^(3−) are the most important dominant predictor variables.
基金supported by the National Key R&D Program of China(No.2018YFC0311203)the Fundamental Research Funds for the Central Universities(No.201941005).
文摘Laminarinases reveal potential application in the field of food and biotechnology.In this research,a novel GH16 family laminarinase,designated as Lam16A_Wa,was cloned from the genome of marine bacterium Wenyingzhuangia aestuarii OF219 and expressed in Escherichia coli.Lam16A_Wa demonstrates a relatively low optimal reaction temperature(35℃)and a cold-adapted feature.Its optimal pH value is 6.0 and is stable in a broad pH range from 3.0 to 11.0.A glycomics strategy was employed to investigate the hydrolytic pattern of Lam16A_Wa.The enzyme was confirmed as a random endo-acting glycoside hydrolase.Its minimum substrate was laminarin pentasaccharide,and the major final products are oligosaccharides,including disaccharide to pentasaccharide.The Lam16A_Wa provides a novel and well-defined tool for the molecular tailoring of laminarin.
