Gene expression variation can be considered as a phenotype,and it plays an important role in both acclimation and adaption.However,genetic variation of gene expression received much less attention than traditional com...Gene expression variation can be considered as a phenotype,and it plays an important role in both acclimation and adaption.However,genetic variation of gene expression received much less attention than traditional commercial traits in aquaculture.To estimate the genetic variation and heritability of gene transcription in clam Meretrix petechialis,five Vibrio resistance-related genes were selected for gene expression analysis in the digestive gland,and an animal linear model was used to analyze data from quantitative real-time PCR(qRT-PCR).Among the five genes,BIRC7 showed significant additive genetic variations,the heritability of this gene of 12-month-and 15-month-old clams were 0.84±0.32 and 0.91±0.34,respectively.The heritability of other four genes(Bax,NFIL3,Big-Def,and CTL9)expression were low-tomoderate but not significantly expressed.Additionally,no significant phenotypic and genetic correlations between the BIRC7 transcription trait and body size were detected.This study highlights that certain gene expression variation is heritable and provides a reference for indirect selection of M.petechialis with high Vibrio resistance.展开更多
Background:Cotton is known for fiber extraction and it is grown in tropical and sub-tropical areas of the world due to having hot weather.Cotton crop has a significant role in GDP of Pakistan.Therefore,the two-years r...Background:Cotton is known for fiber extraction and it is grown in tropical and sub-tropical areas of the world due to having hot weather.Cotton crop has a significant role in GDP of Pakistan.Therefore,the two-years research was conducted to estimate heritability and association among various yield contributing parameters of cotton,i.e.,plant height,number of bolls per plant,number of sympodial branches per plant,seed cotton yield,boll weight,seed index,ginning outturn(GOT),fiber length,fiber strength,and fiber fineness.Results:Association analysis revealed that seed cotton yield had a significant positive correlation with plant height,number of bolls per plant,number of sympodial branches per plant,GOT,staple length and fiber strength.Staple length and fiber strength were negatively linked with each other.Estimates of heritability were high for all of the traits except the number of sympodial branches per plant and boll weight.Conclusion:The parent IUB-222 was found to be the best for plant height,the number of bolls per plant,boll weight,GOT,seed cotton yield,and seed index.The genotypes namely,NIAB-414 and VH-367 were identified as the best parents for fiber length,strength,and fineness.Among the crosses NIAB-414×IUB-222 was the best for the number of bolls per plant,seed index,seed cotton yield and fiber fineness,whereas,the cross of NIAB-414×CIM-632 was good for plant height.The combination of A555×CIM-632 was the best for the number of sympodial branches per plant,boll weight,fiber length,and strength,and VH-367×CIM-632 proved the best for GOT.展开更多
Understanding the variation for the expressionof genes in different environments is one of themajor goals in qualitative genetics. In this pa-per, the genetic models for quantitative traitsof endosperm in cereal crops...Understanding the variation for the expressionof genes in different environments is one of themajor goals in qualitative genetics. In this pa-per, the genetic models for quantitative traitsof endosperm in cereal crops were used to eval-uate the seed, cytoplasm and maternal geneticeffects as well as the genotype × environment(GE) interaction effects, and to predict thebreeding value of parents and genotypic corre-lation for nutrient quality traits of indica rice (Oryza sativa L.).展开更多
There are different degrees of correlation between crop traits. The phenotypic correlation is decomposed into genetic and environmental correlation in quantitative genetics. In this paper,according to stochastic model...There are different degrees of correlation between crop traits. The phenotypic correlation is decomposed into genetic and environmental correlation in quantitative genetics. In this paper,according to stochastic model of variance and covariance analysis,we calculate different genetic components,bring up a decomposition method of genetic correlation coefficient based on NC II mating design,and use examples to show analytic steps and interpret results.展开更多
The exploitation of industrial strains of chickens in the Sahelian climate of Niger is characterized by a decline in performance and significant costs associated with their maintenance. In contrast, local chickens are...The exploitation of industrial strains of chickens in the Sahelian climate of Niger is characterized by a decline in performance and significant costs associated with their maintenance. In contrast, local chickens are well adapted to these environmental conditions but with poor production performance. Genetic selection of these local chickens could improve their productivity. The first step is to determine if the genetic parameters of their growth are high enough to ensure a successful selection strategy. To do so, weekly weights of 69 parents and 119 offspring were followed for 20 weeks. The heritability and genetic correlations of these weights were estimated through the Bayesian approach using the MCMCglmm package on R software. At hatching, weights ranged from 23 to 25 g. At 20 weeks, these weights ranged from 1031 to 1052 g for females and 1308 to 1445 g for males. Heritabilities for hatch weights at 4, 8, 12, 16, and 20 weeks of age were estimated to be 0.56, 0.31, 0.52, 0.53, 0.52 and 0.48 respectively and all genetic correlations were positive. In particular, weight at 8 weeks of age showed both good heritability (h<sup>2</sup> = 0.52) and strong, positive genetic correlations with weights at older ages. These results indicate that genetic selection to improve weight at 8 weeks of age would be a good strategy to improve the overall growth performance of these chickens.展开更多
To assess broad sense heritability and phenotypic and genetic correlations among sugarcane yield components, an experiment was conducted at Wonji and Metehara Sugar Estates of Sugar Corporation of Ethiopia during 2012...To assess broad sense heritability and phenotypic and genetic correlations among sugarcane yield components, an experiment was conducted at Wonji and Metehara Sugar Estates of Sugar Corporation of Ethiopia during 2012/2013. High broad sense heritability (h<sup>2</sup>) was detected for stalk diameter (0.730), single cane weight (0.672), millable cane number (0.624), stalk height (0.624) and pol % (0.608), indicating that these traits could be selected for easily. Expected genetic gain of the yield components was moderate to high. All traits had low to high genetic correlations (r<sub>g</sub> = -0.005 to 0.884) with cane yield and (r<sub>g</sub> = 0.027 to 0.999) with sugar yield. On average genetic correlations were higher than phenotypic correlations. High Genotypic Coefficient of Variation (GCV), broad sense heritability and expected genetic advance were recorded for stalk diameter, single cane weight and millable cane number. A selection strategy based on these traits could lead to improvement in cane and sugar yield.展开更多
A solid understanding of the efficiency of early selection for fiber dimensions is a prerequisite for breeding slash pine(Pinus elliottii Engelm.)with improved properties for pulp and paper products.Genetic correlatio...A solid understanding of the efficiency of early selection for fiber dimensions is a prerequisite for breeding slash pine(Pinus elliottii Engelm.)with improved properties for pulp and paper products.Genetic correlations between size of fibers,wood quality and growth properties are also important.To accomplish effective early selection for size of fibers and evaluate the impact for wood quality traits and ring widths,core samples were collected from360 trees of 20 open-pollinated Pinus elliottii families from three genetic trials.Cores were measured by SilviScan,and the age trends for phenotypic values,heritability,early-late genetic correlations,and early selection efficiency for fiber dimensions,such as tangential and radial fiber widths,fiber wall thickness and fiber coarseness,and their correlations with microfibril angle(MFA),modulus of elasticity(MOE),wood density and ring width were investigated.Different phenotypic trends were found for tangential and radial fiber widths while fiber coarseness and wall thickness curves were similar.Age trends of heritability based on area-weighted fiber dimensions were different.Low to moderate heritability from pith to bark(~0.5)was found for all fiber dimension across the three sites except for tangential fiber width and wall thickness at the Ganzhou site.Early-late genetic correlations were 0.9 after age of 9 years,and early selection for fiber dimensions could be effective due to strong genetic correlations.Our results showed moderate to strong positive genetic correlations for modulus of elasticity and density with fiber dimensions.The effects on fiber dimensions were weak or moderate when ring width or wood quality traits were selected alone.Estimates of efficiency for early selection indicated that the optimal age for radial fiber width and fiber coarseness was 6-7 years,while for tangential fiber width and wall thickness was 9-10 years.展开更多
Ammonia,toxic to aquaculture organisms,represents a potential problem in aquaculture systems,and the situation is exacerbated in closed and intensive shrimp farming operations,expecially for Litopenaeus vannamei.Asses...Ammonia,toxic to aquaculture organisms,represents a potential problem in aquaculture systems,and the situation is exacerbated in closed and intensive shrimp farming operations,expecially for Litopenaeus vannamei.Assessing the potential for the genetic improvement of resistance to ammonia in L.vannamei requires knowledge of the genetic parameters of this trait.The heritability of resistance to ammonia was estimated using two descriptors in the present study:the survival time(ST) and the survival status at half lethal time(SS_(50)) for each individual under high ammonia challenge.The heritability of ST and SS_(50) were low(0.154 4±0.044 6 and 0.147 5±0.040 0,respectively),but they were both significantly different from zero(P<0.01).Moreover,these two estimates were basically the same and showed no significant differences from each other(P>0.05),suggesting that ST and SS_(50) could be used as suitable indicators for resistance to ammonia.There were also positive phenotypic and genetic correlation between resistance to ammonia and body weight,which means that resistance to ammonia can be enhanced by the improvement of husbandry practices that increase the body weight.The results from the present study suggest that the selection for higher body weight does not have any negative consequences for resistance to ammonia.In addition to quantitative genetics,tools from molecular genetics can be applied to selective breeding programs to improve the efficiency of selection for traits with low heritability.展开更多
The objective of this study was to estimate genetic parameters of body width(BW)to body length(BL)ratio(BW/BL)and of body weight traits(BWT)in turbot,and to elucidate the genetic mechanism of the two traits during ont...The objective of this study was to estimate genetic parameters of body width(BW)to body length(BL)ratio(BW/BL)and of body weight traits(BWT)in turbot,and to elucidate the genetic mechanism of the two traits during ontogeny by dynamic genetic analysis.From 3 to 27 months,BW,BL and BWT of each communally stocked fish were measured every 3 months.The BW/BL ratio was measured at different sampling ages.A twotrait animal model was used for genetic evaluation of traits.The results showed that the heritability values of BW/BL ratio ranged from 0.2168 to 0.3148,corresponding to moderate heritability.The BWT heritability values ranged from 0.2702 to 0.3479 corresponding to moderate heritability.The heritability of BW/BL ratio was lower than that of BWT,except at 3 months of age.Genetic correlation between BW/BL ratio and BWT decreased throughout the measurement period.Genetic correlations were higher than the phenotypic correlations.The current results for estimating genetic parameters demonstrate that the BW/BL ratio could be used as a phenotypic marker of fast-growing turbot,and the BW/BL ratio and BWT could be improved simultaneously through selective breeding.展开更多
The aim of this study was to evaluate the genetic parameters of the growth performance of Takifugu rubripes.Heritabilities and genetic correlations were estimated for body weight(BW),body length(BL),total length(TL),c...The aim of this study was to evaluate the genetic parameters of the growth performance of Takifugu rubripes.Heritabilities and genetic correlations were estimated for body weight(BW),body length(BL),total length(TL),chest measurement(CM)and trunk length(TKL)of T.rubripes from measurements of progeny at 6 months and 12 months.The results showed that the heritability was 0.37 for BW6,0.19 for BL6,0.35 for TL6,0.29 for CM6,0.26 for TKL6,0.36 for BW12,0.26 for BL12,0.25 for TL12,0.31 for CM12 and 0.15 for TKL12.The range of genetic correlations estimated at 6 months was 0.025–0.725 and−0.002–0.706 at 12 months.The results indicated that genetic improvement for faster growth rate or increased body weight in cultured T.rubripes was effective.Based on selection theory,the selection strategy for traits with medium heritability is flexible.Considering that these growth traits do not reach the high level of heritability,family selection should be expected.Given positive genetic correlations among BW,BL,TL,CM,and TKL at 6 months,the five traits could be improved simultaneously through selective breeding.As there was high genetic correlation only between BW12,BL12 and TL12,and negative correlations between TKL12 and BL12 as well as between CM12 and TL12,and only BW,BL and TL at 12 months could be improved simultaneously.展开更多
Sorghum is a staple food crop in Ethiopia and its production is mainly constrained by drought, other environmental factors, and the use of low-yielding, local sorghum varieties. To improve sorghum productivity, it is ...Sorghum is a staple food crop in Ethiopia and its production is mainly constrained by drought, other environmental factors, and the use of low-yielding, local sorghum varieties. To improve sorghum productivity, it is crucial to provide farmers with high yielding, stable sorghum cultivars that are tolerant to drought and other constraints. The stable performance of sorghum varieties in a growing region is critical to obtain a high and stable yield. In the 2012-2014 crop year, 24 genotypes, including standard controls, were evaluated at the national variety trial stage over six main dry lowland sorghum growing sites and two years made 7 environments to evaluate their performance, stability and to quantify Genotype by Environment Interaction (GEI) across moisture stress sorghum growing areas of Ethiopia. Spatial modeling has been used to estimate predicted mean (BLUPs) results and Performance and estimation of environmental correlation, heritability, GEI, and other parameters using the ASReml3-R analysis package. The predicted mean yield of the test genotypes across the environment ranged from 3.45 to 1.56 t<span style="font-family:Verdana;">·</span><span style="font-family:;" "=""><span style="font-family:Verdana;">ha</span><sup><span style="font-family:Verdana;">-1</span></sup><span style="font-family:Verdana;">. Based on the result genotype G13, it could be further promoted because of its yield advantage and other important attributes over the standard checks, but it is the least stable. Based on the analyzed result, two mega environments were formed and Environment 1 (E1) is identified as an ideal environment among the testing environments.</span></span>展开更多
<span style="font-family:Verdana;">Direct selection for longevity results in improved health and fitness and even milk production of cows. However, longevity is lowly heritable and phenotypic informati...<span style="font-family:Verdana;">Direct selection for longevity results in improved health and fitness and even milk production of cows. However, longevity is lowly heritable and phenotypic information is obtained at the end of an animal’s life. Traits expressed early in life and which are favorably correlated to longevity can be useful in selecting for this trait. The aim of this study was to estimate genetic correlations between longevity and age at first calving, first lactation calving interval, number of services per conception, first lactation milk yield, and first parity lactation length. Heritability estimates for measures of longevity were also calculated. The measures of longevity were time between birth and last milking in days (Long1), time between first calving and last milking record in months (Long2), number of lactations initiated (Long3), and total number of days in lactation over all lactations (Long4), total milk yield over all lactations (kg) (Long5). A series of five-variate animal models were fitted to estimate the nature and magnitude of genetic and phenotypic correlations between each measure of longevity and the fertility and production traits. Genetic correlations between measures of longevity and age at first calving, calving interval and number of services per conception were negative ranging from -0.14 ± 0.05 to <span style="font-family:Verdana;white-space:normal;">-</span>0.96 ± 0.06, <span style="font-family:Verdana;white-space:normal;">-</span>0.06 ± 0.03 to <span style="font-family:Verdana;white-space:normal;">-</span>0.67 ± 0.08 and <span style="font-family:Verdana;white-space:normal;">-</span>0.02 ± 0.02 to <span style="font-family:Verdana;white-space:normal;">-</span>0.73 ± 0.34, respectively. Correlations between measures of longevity and first lactation milk yield ranged from 0.88 ± 0.01 to 0.97 ± 0.03. Those with first parity lactation length ranged from <span style="font-family:Verdana;white-space:normal;">-</span>0.10 to 0.72. Long1, Long4 and Long5, which measure time between birth and last milking day, total number of days in lactation over all lactations and total milk yield over all lactations (kg), respectively, had the highest heritability estimates. These three could therefore be used to directly select for longevity. Among the traits studied, first lactation milk yield and age at first calving had the highest genetic correlation with measures of longevity. </span><span style="font-family:Verdana;">Therefore, first lactation milk yield and age at first calving could</span><span style="font-family:Verdana;">,</span><span style="font-family:Verdana;"> therefore</span><span style="font-family:Verdana;">,</span><span style="font-family:Verdana;"> be used to indirectly select for longevity.</span>展开更多
Apple leaf disease is one of the main factors to constrain the apple production and quality.It takes a long time to detect the diseases by using the traditional diagnostic approach,thus farmers often miss the best tim...Apple leaf disease is one of the main factors to constrain the apple production and quality.It takes a long time to detect the diseases by using the traditional diagnostic approach,thus farmers often miss the best time to prevent and treat the diseases.Apple leaf disease recognition based on leaf image is an essential research topic in the field of computer vision,where the key task is to find an effective way to represent the diseased leaf images.In this research,based on image processing techniques and pattern recognition methods,an apple leaf disease recognition method was proposed.A color transformation structure for the input RGB(Red,Green and Blue)image was designed firstly and then RGB model was converted to HSI(Hue,Saturation and Intensity),YUV and gray models.The background was removed based on a specific threshold value,and then the disease spot image was segmented with region growing algorithm(RGA).Thirty-eight classifying features of color,texture and shape were extracted from each spot image.To reduce the dimensionality of the feature space and improve the accuracy of the apple leaf disease identification,the most valuable features were selected by combining genetic algorithm(GA)and correlation based feature selection(CFS).Finally,the diseases were recognized by SVM classifier.In the proposed method,the selected feature subset was globally optimum.The experimental results of more than 90%correct identification rate on the apple diseased leaf image database which contains 90 disease images for there kinds of apple leaf diseases,powdery mildew,mosaic and rust,demonstrate that the proposed method is feasible and effective.展开更多
We present a global optimization method, called the genetic algorithms (GAs), for digital image/speckle correlation (DISC). The new algorithms do not involve reasonable initial guess of displacement and deformation gr...We present a global optimization method, called the genetic algorithms (GAs), for digital image/speckle correlation (DISC). The new algorithms do not involve reasonable initial guess of displacement and deformation gradient and the calculation of second-order spatial derivatives of the digital images, which are important challenges in practical implementation of DISC. The performance of a GA depends largely on the selection of the genetic operators. We test various operators and propose optimal operators. The algorithms are then verified using simulated images and experimental speckle images.展开更多
Chinese tongue sole(Cynoglossus semilaevis)is an important marine flatfish which is widely cultured in coastal areas in China.Infectious bacterial diseases such as Edwardsiella tarda imposed serious threats to this sp...Chinese tongue sole(Cynoglossus semilaevis)is an important marine flatfish which is widely cultured in coastal areas in China.Infectious bacterial diseases such as Edwardsiella tarda imposed serious threats to this species.A potential strategy to prevent this disease is to select resistance strains.The aim of the present work was to estimate the genetic variation of disease resistance to E.tarda and to evaluate the genetic correlations between resistance traits and growth traits.Three types of models were fitted by using different trait definitions(binary,continuous and categorical).After a 9-day challenge test,the overall survival was 75.4%(ranging from 6.4%to 100%in families),and at test day 6,the overall survival was 50.7%.We set test day 6 and 9 as cut-off point times respectively.The heritabilities of survival traits were ranging from 0.10 to 0.36.Considerably higher heritability values were obtained at day 6 than at day 9,regardless of which model or trait definition used(except Trait 2 in LIN).The genetic correlations between disease resistance traits and growth traits(i.e.body weight and total length)were low and not significant from zero(−0.12–0.24).There is a substantial re-ranking of families when defined resistance as categorical and continuous traits compared to binary trait.These results confirm the existence of genetic variation for resistance against E.tarda and weak genetic correlations indicate that joint genetic improvement of E.tarda resistance and growth is scarcely available.展开更多
In aquaculture,selective breeding for survival till harvest have become an alternative strategy for improving disease resistance and production.However,knowledge of genetic parameters of harvest survival,e.g.,heritabi...In aquaculture,selective breeding for survival till harvest have become an alternative strategy for improving disease resistance and production.However,knowledge of genetic parameters of harvest survival,e.g.,heritability and genetic correlations between survival and growth rate traits,is still scarce.The aims of this study were to estimate genetic parameters for harvest survival and growth rate traits under commercial farming conditions in olive flounder(Paralichthys olivaceus).Harvest survival was defined as a binary trait;growth traits were measured as average daily gain(ADG),specific growth rate(SGR),daily growth coefficient(DGC)and body weight(BW).Data from a population of 241 full-sib families(involving 39,904 individuals,four generations)were used.Heritabilities of survival were low but significant,which were 0.15±0.04 and 0.22±0.01 on observed and underlying scale,respectively.Heritability estimates for ADG,SGR and DGC were medium to high,which were 0.33±0.06,0.83±0.07,0.58±0.07,respectively.While the heritability of BW is of low magnitude(0.17±0.08).The genetic correlations between harvest survival and three growth rate traits(i.e.,ADG,SGR and DGC)were very strong(ranging from 0.66 to 0.79),which is an exciting result.However,the genetic correlation between harvest survival and BW was much lower(0.17±0.08).These results suggest that selection for harvest survival would consequentially result in concomitant increase of growth rate,and vice versa.Our findings revealed novel insights into the genetic improvement of growth rate and harvest survival through genetic selection in olive flounder.展开更多
The aim of this study was to evaluate genetic parameters of growth traits for improving selective breeding in olive flounder(Paralichthys olivaceus).A total of 82 full-sib families from 2 year-classes with complete pe...The aim of this study was to evaluate genetic parameters of growth traits for improving selective breeding in olive flounder(Paralichthys olivaceus).A total of 82 full-sib families from 2 year-classes with complete pedigree information were used to estimate heritabilities and genetic/phenotypic correlations for 4 growth performance traits(body weight BW,total length TL,body height BH and condition factor K)based on uni-trait and multi-trait linear mixed models,respectively.Data were analyzed by the restricted maximum likelihood(REML)method.The heritabilities of BW,TL and BH were 0.81,0.70 and 0.61,which are relatively high,however,heritability for K is low(0.11).For all growth traits,the common full-sib effects(c^(2))were at a low to moderate level(0.14–0.20);the maternal effects(m^(2))of the traits(except K)were also detected(0.15–0.19).The phenotypic and genetic correlations among BW,TL and BH were highly positive(0.70–0.91),however,the correlations between K and the other 3 traits was low or negligible(−0.22–0.26).According to our results,these traits(except K)could be selected and enhanced simultaneously.In addition,direct selection based on TL or BH,which is an easily measurable trait,will be more favorable than selection on BW.Moreover,our results indicated that growth parameters estimated in the juvenile stage could be used as a predictor of growth performance at later growth stages.展开更多
Body height,body mass index,hip and waist circumference are important risk factors or outcome variables in clinical and epidemiological research with complex underlying genetics.However,these classical anthropometric ...Body height,body mass index,hip and waist circumference are important risk factors or outcome variables in clinical and epidemiological research with complex underlying genetics.However,these classical anthropometric traits represent only a very limited view on the human body and other traits with potentially higher functional specificity are not yet studied to a larger extent.Participants of LIFE-Adult were assessed by three-dimensional body scanner VITUS XXL determining 99 high-quality anthropometric traits in parallel.Genotyping was performed by Axiom Genome-Wide CEU 1 Array Plate microarray technology and imputation was done using 1000 Genomes phase 3 reference panel.Combined phenotype and genetic information are available for a total of 7,562 participants.Largest heritabilities were estimated for height traits(maximum heritability with h2=44%for neck height)and 61 traits achieved values larger than 20%.By genome-wide analyses,we identified 16 loci associated with at least one of the 99 traits.Ten of these loci were not described for association with classical anthropometric traits so far.The strongest novel association was observed for 7p14.3(rs11979006,P=2.12×10^(-9))for the trait Back Width with ZNRF2 as the most plausible candidate gene.Loci established for association with classical anthropometric traits were subjected to anthropometric phenome-wide association analysis.From the reported 709 loci,211 are.coassociated with body scanner traits(enrichment:OR=1.96,P=1.08×10^(-61)).We conclude that genetics of 3D laser-based anthropometry is promising to identify novel loci and to improve the functional understanding of established ones.展开更多
Background:While type 2 diabetes mellitus(T2DM)is considered a putative causal risk factor for coronary artery disease(CAD),the intrinsic link underlying T2DM and CAD is not fully understood.We aimed to highlight the ...Background:While type 2 diabetes mellitus(T2DM)is considered a putative causal risk factor for coronary artery disease(CAD),the intrinsic link underlying T2DM and CAD is not fully understood.We aimed to highlight the importance of integrated care targeting both diseases by investigating the phenotypic and genetic relationships between T2DM and CAD.Methods:We evaluated phenotypic associations using data from the United Kingdom Biobank(N=472,050).We investigated genetic relationships by leveraging genomic data conducted in European ancestry for T2DM,with and without adjustment for body mass index(BMI)(T2DM:N_(case)/N_(control)=74,124/824,006;T2DM adjusted for BMI[T2DM_(adj)BMI]:N_(case)/N_(control)=50,409/523,897)and for CAD(N_(case)/N_(control)=181,522/984,168).We performed additional analyses using genomic data conducted in multiancestry individuals for T2DM(N_(case)/N_(control)=180,834/1,159,055).Results:Observational analysis suggested a bidirectional relationship between T2DM and CAD(T2DM→CAD:hazard ratio[HR]=2.12,95%confidence interval[CI]:2.01–2.24;CAD→T2DM:HR=1.72,95%CI:1.63–1.81).A positive overall genetic correlation between T2DM and CAD was observed(r_(g)=0.39,P=1.43×10^(-75)),which was largely independent of BMI(T2DM_(adj)BMI–CAD:r_(g)=0.31,P=1.20×10^(–36)).This was corroborated by six local signals,among which 9p21.3 showed the strongest genetic correlation.Cross-trait meta-analysis replicated 101 previously reported loci and discovered six novel pleiotropic loci.Mendelian randomization analysis supported a bidirectional causal relationship(T2DM→CAD:odds ratio[OR]=1.13,95%CI:1.11-1.16;CAD→T2DM:OR=1.12,95%CI:1.07-1.18),which was confirmed in multiancestry individuals(T2DM→CAD:OR=1.13,95%CI:1.10-1.16;CAD→T2DM:OR=1.08,95%CI:1.04-1.13).This bidirectional relationship was significantly mediated by systolic blood pressure and intake of 3-hydroxy-3-methylglutaryl coenzyme A reductase inhibitors,with mediation proportions of 54.1%(95%CI:24.9-83.4%)and 90.4%(95%CI:29.3-151.5%),respectively.Conclusion:Our observational and genetic analyses demonstrated an intrinsic bidirectional relationship between T2DM and CAD and clarified the biological mechanisms underlying this relationship.展开更多
基金Supported by the China Agriculture Research System(No.CARS-49)the National Natural Science Foundation of China(No.31772845)+1 种基金the Science and Technology Service Network Initiative of the Chinese Academy of Sciences(No.KFJ-STS-ZDTP-049)the Foundation of Zhejiang Key Laboratory of Exploitation and Preservation of Coastal Bio-Resource(No.J2018001)
文摘Gene expression variation can be considered as a phenotype,and it plays an important role in both acclimation and adaption.However,genetic variation of gene expression received much less attention than traditional commercial traits in aquaculture.To estimate the genetic variation and heritability of gene transcription in clam Meretrix petechialis,five Vibrio resistance-related genes were selected for gene expression analysis in the digestive gland,and an animal linear model was used to analyze data from quantitative real-time PCR(qRT-PCR).Among the five genes,BIRC7 showed significant additive genetic variations,the heritability of this gene of 12-month-and 15-month-old clams were 0.84±0.32 and 0.91±0.34,respectively.The heritability of other four genes(Bax,NFIL3,Big-Def,and CTL9)expression were low-tomoderate but not significantly expressed.Additionally,no significant phenotypic and genetic correlations between the BIRC7 transcription trait and body size were detected.This study highlights that certain gene expression variation is heritable and provides a reference for indirect selection of M.petechialis with high Vibrio resistance.
基金the Department of Plant Breeding and Genetics,Faculty of Agriculture,University of Agriculture,Faisalabad,Pakistan.
文摘Background:Cotton is known for fiber extraction and it is grown in tropical and sub-tropical areas of the world due to having hot weather.Cotton crop has a significant role in GDP of Pakistan.Therefore,the two-years research was conducted to estimate heritability and association among various yield contributing parameters of cotton,i.e.,plant height,number of bolls per plant,number of sympodial branches per plant,seed cotton yield,boll weight,seed index,ginning outturn(GOT),fiber length,fiber strength,and fiber fineness.Results:Association analysis revealed that seed cotton yield had a significant positive correlation with plant height,number of bolls per plant,number of sympodial branches per plant,GOT,staple length and fiber strength.Staple length and fiber strength were negatively linked with each other.Estimates of heritability were high for all of the traits except the number of sympodial branches per plant and boll weight.Conclusion:The parent IUB-222 was found to be the best for plant height,the number of bolls per plant,boll weight,GOT,seed cotton yield,and seed index.The genotypes namely,NIAB-414 and VH-367 were identified as the best parents for fiber length,strength,and fineness.Among the crosses NIAB-414×IUB-222 was the best for the number of bolls per plant,seed index,seed cotton yield and fiber fineness,whereas,the cross of NIAB-414×CIM-632 was good for plant height.The combination of A555×CIM-632 was the best for the number of sympodial branches per plant,boll weight,fiber length,and strength,and VH-367×CIM-632 proved the best for GOT.
文摘Understanding the variation for the expressionof genes in different environments is one of themajor goals in qualitative genetics. In this pa-per, the genetic models for quantitative traitsof endosperm in cereal crops were used to eval-uate the seed, cytoplasm and maternal geneticeffects as well as the genotype × environment(GE) interaction effects, and to predict thebreeding value of parents and genotypic corre-lation for nutrient quality traits of indica rice (Oryza sativa L.).
文摘There are different degrees of correlation between crop traits. The phenotypic correlation is decomposed into genetic and environmental correlation in quantitative genetics. In this paper,according to stochastic model of variance and covariance analysis,we calculate different genetic components,bring up a decomposition method of genetic correlation coefficient based on NC II mating design,and use examples to show analytic steps and interpret results.
文摘The exploitation of industrial strains of chickens in the Sahelian climate of Niger is characterized by a decline in performance and significant costs associated with their maintenance. In contrast, local chickens are well adapted to these environmental conditions but with poor production performance. Genetic selection of these local chickens could improve their productivity. The first step is to determine if the genetic parameters of their growth are high enough to ensure a successful selection strategy. To do so, weekly weights of 69 parents and 119 offspring were followed for 20 weeks. The heritability and genetic correlations of these weights were estimated through the Bayesian approach using the MCMCglmm package on R software. At hatching, weights ranged from 23 to 25 g. At 20 weeks, these weights ranged from 1031 to 1052 g for females and 1308 to 1445 g for males. Heritabilities for hatch weights at 4, 8, 12, 16, and 20 weeks of age were estimated to be 0.56, 0.31, 0.52, 0.53, 0.52 and 0.48 respectively and all genetic correlations were positive. In particular, weight at 8 weeks of age showed both good heritability (h<sup>2</sup> = 0.52) and strong, positive genetic correlations with weights at older ages. These results indicate that genetic selection to improve weight at 8 weeks of age would be a good strategy to improve the overall growth performance of these chickens.
文摘To assess broad sense heritability and phenotypic and genetic correlations among sugarcane yield components, an experiment was conducted at Wonji and Metehara Sugar Estates of Sugar Corporation of Ethiopia during 2012/2013. High broad sense heritability (h<sup>2</sup>) was detected for stalk diameter (0.730), single cane weight (0.672), millable cane number (0.624), stalk height (0.624) and pol % (0.608), indicating that these traits could be selected for easily. Expected genetic gain of the yield components was moderate to high. All traits had low to high genetic correlations (r<sub>g</sub> = -0.005 to 0.884) with cane yield and (r<sub>g</sub> = 0.027 to 0.999) with sugar yield. On average genetic correlations were higher than phenotypic correlations. High Genotypic Coefficient of Variation (GCV), broad sense heritability and expected genetic advance were recorded for stalk diameter, single cane weight and millable cane number. A selection strategy based on these traits could lead to improvement in cane and sugar yield.
基金supported by the National Natural Science Foundation of China(No.32260407)Science and Technology Leader Foundation of Jiangxi Province(No.20212BCJ23011)National Natural Science Foundation of China(No.31860220 and 32160385)。
文摘A solid understanding of the efficiency of early selection for fiber dimensions is a prerequisite for breeding slash pine(Pinus elliottii Engelm.)with improved properties for pulp and paper products.Genetic correlations between size of fibers,wood quality and growth properties are also important.To accomplish effective early selection for size of fibers and evaluate the impact for wood quality traits and ring widths,core samples were collected from360 trees of 20 open-pollinated Pinus elliottii families from three genetic trials.Cores were measured by SilviScan,and the age trends for phenotypic values,heritability,early-late genetic correlations,and early selection efficiency for fiber dimensions,such as tangential and radial fiber widths,fiber wall thickness and fiber coarseness,and their correlations with microfibril angle(MFA),modulus of elasticity(MOE),wood density and ring width were investigated.Different phenotypic trends were found for tangential and radial fiber widths while fiber coarseness and wall thickness curves were similar.Age trends of heritability based on area-weighted fiber dimensions were different.Low to moderate heritability from pith to bark(~0.5)was found for all fiber dimension across the three sites except for tangential fiber width and wall thickness at the Ganzhou site.Early-late genetic correlations were 0.9 after age of 9 years,and early selection for fiber dimensions could be effective due to strong genetic correlations.Our results showed moderate to strong positive genetic correlations for modulus of elasticity and density with fiber dimensions.The effects on fiber dimensions were weak or moderate when ring width or wood quality traits were selected alone.Estimates of efficiency for early selection indicated that the optimal age for radial fiber width and fiber coarseness was 6-7 years,while for tangential fiber width and wall thickness was 9-10 years.
基金Supported by the National High Technology Research and Development Program of China(863 Program)(No.2012AA10A404)the Qingdao Postdoctoral Science Foundation Funded Project(No.Q51201403)+3 种基金the National Natural Science Foundation of China(Nos.31302179,31172402)the 948 Project from the Ministry of Agriculture of China(No.2015-Z17)the Improved Agricultural Breeds Engineering Project of Shandong Province-the Taishan Scholar Program for seed industry "Multi-Tarits Selective Breeding of New Variety and Its Industrialization"the Fundamental Research Funds for the Yellow Sea Fisheries Research Institute Chinese Academy of Fishery Sciences(No.20603022013011)
文摘Ammonia,toxic to aquaculture organisms,represents a potential problem in aquaculture systems,and the situation is exacerbated in closed and intensive shrimp farming operations,expecially for Litopenaeus vannamei.Assessing the potential for the genetic improvement of resistance to ammonia in L.vannamei requires knowledge of the genetic parameters of this trait.The heritability of resistance to ammonia was estimated using two descriptors in the present study:the survival time(ST) and the survival status at half lethal time(SS_(50)) for each individual under high ammonia challenge.The heritability of ST and SS_(50) were low(0.154 4±0.044 6 and 0.147 5±0.040 0,respectively),but they were both significantly different from zero(P<0.01).Moreover,these two estimates were basically the same and showed no significant differences from each other(P>0.05),suggesting that ST and SS_(50) could be used as suitable indicators for resistance to ammonia.There were also positive phenotypic and genetic correlation between resistance to ammonia and body weight,which means that resistance to ammonia can be enhanced by the improvement of husbandry practices that increase the body weight.The results from the present study suggest that the selection for higher body weight does not have any negative consequences for resistance to ammonia.In addition to quantitative genetics,tools from molecular genetics can be applied to selective breeding programs to improve the efficiency of selection for traits with low heritability.
基金The Earmarked Fund for Modern Agro-Industry Technology Research System under contract No.CARS-47-G01the Ao Shan Talents Cultivation Program supported by Qingdao National Laboratory for Marine Science and Technology under contract No.2017ASTCP-OS04+2 种基金the Agricultural Fine Breed Project of Shandong under contract No.2016LZGC031the Chinese Academy of Fishery Sciences Basal Research Fund under contract No.2016HY-JC0302the National Key Research and Development Program under contract No.2018YFD0900102
文摘The objective of this study was to estimate genetic parameters of body width(BW)to body length(BL)ratio(BW/BL)and of body weight traits(BWT)in turbot,and to elucidate the genetic mechanism of the two traits during ontogeny by dynamic genetic analysis.From 3 to 27 months,BW,BL and BWT of each communally stocked fish were measured every 3 months.The BW/BL ratio was measured at different sampling ages.A twotrait animal model was used for genetic evaluation of traits.The results showed that the heritability values of BW/BL ratio ranged from 0.2168 to 0.3148,corresponding to moderate heritability.The BWT heritability values ranged from 0.2702 to 0.3479 corresponding to moderate heritability.The heritability of BW/BL ratio was lower than that of BWT,except at 3 months of age.Genetic correlation between BW/BL ratio and BWT decreased throughout the measurement period.Genetic correlations were higher than the phenotypic correlations.The current results for estimating genetic parameters demonstrate that the BW/BL ratio could be used as a phenotypic marker of fast-growing turbot,and the BW/BL ratio and BWT could be improved simultaneously through selective breeding.
基金The National Key R&D Program of China under contract No.2018YFD0900102the Key Research and Development Plan of Nation under contract No.2018YFD0900301+2 种基金the AoShan Talents Cultivation Program Supported by Pilot National Laboratory for Marine Science and Technology(Qingdao)under contract No.2017ASTCP-OS04the Earmarked Fund for the Modern AgroIndustry Technology Research System under contract No.CARS-47-G01the Central Public-interest Scientific Institution Basal Research Fund under contract No.2020TD25.
文摘The aim of this study was to evaluate the genetic parameters of the growth performance of Takifugu rubripes.Heritabilities and genetic correlations were estimated for body weight(BW),body length(BL),total length(TL),chest measurement(CM)and trunk length(TKL)of T.rubripes from measurements of progeny at 6 months and 12 months.The results showed that the heritability was 0.37 for BW6,0.19 for BL6,0.35 for TL6,0.29 for CM6,0.26 for TKL6,0.36 for BW12,0.26 for BL12,0.25 for TL12,0.31 for CM12 and 0.15 for TKL12.The range of genetic correlations estimated at 6 months was 0.025–0.725 and−0.002–0.706 at 12 months.The results indicated that genetic improvement for faster growth rate or increased body weight in cultured T.rubripes was effective.Based on selection theory,the selection strategy for traits with medium heritability is flexible.Considering that these growth traits do not reach the high level of heritability,family selection should be expected.Given positive genetic correlations among BW,BL,TL,CM,and TKL at 6 months,the five traits could be improved simultaneously through selective breeding.As there was high genetic correlation only between BW12,BL12 and TL12,and negative correlations between TKL12 and BL12 as well as between CM12 and TL12,and only BW,BL and TL at 12 months could be improved simultaneously.
文摘Sorghum is a staple food crop in Ethiopia and its production is mainly constrained by drought, other environmental factors, and the use of low-yielding, local sorghum varieties. To improve sorghum productivity, it is crucial to provide farmers with high yielding, stable sorghum cultivars that are tolerant to drought and other constraints. The stable performance of sorghum varieties in a growing region is critical to obtain a high and stable yield. In the 2012-2014 crop year, 24 genotypes, including standard controls, were evaluated at the national variety trial stage over six main dry lowland sorghum growing sites and two years made 7 environments to evaluate their performance, stability and to quantify Genotype by Environment Interaction (GEI) across moisture stress sorghum growing areas of Ethiopia. Spatial modeling has been used to estimate predicted mean (BLUPs) results and Performance and estimation of environmental correlation, heritability, GEI, and other parameters using the ASReml3-R analysis package. The predicted mean yield of the test genotypes across the environment ranged from 3.45 to 1.56 t<span style="font-family:Verdana;">·</span><span style="font-family:;" "=""><span style="font-family:Verdana;">ha</span><sup><span style="font-family:Verdana;">-1</span></sup><span style="font-family:Verdana;">. Based on the result genotype G13, it could be further promoted because of its yield advantage and other important attributes over the standard checks, but it is the least stable. Based on the analyzed result, two mega environments were formed and Environment 1 (E1) is identified as an ideal environment among the testing environments.</span></span>
文摘<span style="font-family:Verdana;">Direct selection for longevity results in improved health and fitness and even milk production of cows. However, longevity is lowly heritable and phenotypic information is obtained at the end of an animal’s life. Traits expressed early in life and which are favorably correlated to longevity can be useful in selecting for this trait. The aim of this study was to estimate genetic correlations between longevity and age at first calving, first lactation calving interval, number of services per conception, first lactation milk yield, and first parity lactation length. Heritability estimates for measures of longevity were also calculated. The measures of longevity were time between birth and last milking in days (Long1), time between first calving and last milking record in months (Long2), number of lactations initiated (Long3), and total number of days in lactation over all lactations (Long4), total milk yield over all lactations (kg) (Long5). A series of five-variate animal models were fitted to estimate the nature and magnitude of genetic and phenotypic correlations between each measure of longevity and the fertility and production traits. Genetic correlations between measures of longevity and age at first calving, calving interval and number of services per conception were negative ranging from -0.14 ± 0.05 to <span style="font-family:Verdana;white-space:normal;">-</span>0.96 ± 0.06, <span style="font-family:Verdana;white-space:normal;">-</span>0.06 ± 0.03 to <span style="font-family:Verdana;white-space:normal;">-</span>0.67 ± 0.08 and <span style="font-family:Verdana;white-space:normal;">-</span>0.02 ± 0.02 to <span style="font-family:Verdana;white-space:normal;">-</span>0.73 ± 0.34, respectively. Correlations between measures of longevity and first lactation milk yield ranged from 0.88 ± 0.01 to 0.97 ± 0.03. Those with first parity lactation length ranged from <span style="font-family:Verdana;white-space:normal;">-</span>0.10 to 0.72. Long1, Long4 and Long5, which measure time between birth and last milking day, total number of days in lactation over all lactations and total milk yield over all lactations (kg), respectively, had the highest heritability estimates. These three could therefore be used to directly select for longevity. Among the traits studied, first lactation milk yield and age at first calving had the highest genetic correlation with measures of longevity. </span><span style="font-family:Verdana;">Therefore, first lactation milk yield and age at first calving could</span><span style="font-family:Verdana;">,</span><span style="font-family:Verdana;"> therefore</span><span style="font-family:Verdana;">,</span><span style="font-family:Verdana;"> be used to indirectly select for longevity.</span>
基金Natural Science Foundation of China(grant Nos.61473237,61202170,and 61402331)It is also supported by the Shaanxi Provincial Natural Science Foundation Research Project(2014JM2-6096)+3 种基金Tianjin Research Program of Application Foundation and Advanced Technology(14JCYBJC42500)Tianjin science and technology correspondent project(16JCTPJC47300)the 2015 key projects of Tianjin science and technology support program(No.15ZCZDGX00200)the Fund of Tianjin Food Safety&Low Carbon Manufacturing Collaborative Innovation Center.
文摘Apple leaf disease is one of the main factors to constrain the apple production and quality.It takes a long time to detect the diseases by using the traditional diagnostic approach,thus farmers often miss the best time to prevent and treat the diseases.Apple leaf disease recognition based on leaf image is an essential research topic in the field of computer vision,where the key task is to find an effective way to represent the diseased leaf images.In this research,based on image processing techniques and pattern recognition methods,an apple leaf disease recognition method was proposed.A color transformation structure for the input RGB(Red,Green and Blue)image was designed firstly and then RGB model was converted to HSI(Hue,Saturation and Intensity),YUV and gray models.The background was removed based on a specific threshold value,and then the disease spot image was segmented with region growing algorithm(RGA).Thirty-eight classifying features of color,texture and shape were extracted from each spot image.To reduce the dimensionality of the feature space and improve the accuracy of the apple leaf disease identification,the most valuable features were selected by combining genetic algorithm(GA)and correlation based feature selection(CFS).Finally,the diseases were recognized by SVM classifier.In the proposed method,the selected feature subset was globally optimum.The experimental results of more than 90%correct identification rate on the apple diseased leaf image database which contains 90 disease images for there kinds of apple leaf diseases,powdery mildew,mosaic and rust,demonstrate that the proposed method is feasible and effective.
基金This work was supported by 985 Education Development Plan of Tianjin University
文摘We present a global optimization method, called the genetic algorithms (GAs), for digital image/speckle correlation (DISC). The new algorithms do not involve reasonable initial guess of displacement and deformation gradient and the calculation of second-order spatial derivatives of the digital images, which are important challenges in practical implementation of DISC. The performance of a GA depends largely on the selection of the genetic operators. We test various operators and propose optimal operators. The algorithms are then verified using simulated images and experimental speckle images.
基金This work was supported by Central Public-interest Scientific Institution Basal Research Fund CAFS(NO·2016HY-ZD0201)Taishan Scholar Project Fund of Shandong of China.
文摘Chinese tongue sole(Cynoglossus semilaevis)is an important marine flatfish which is widely cultured in coastal areas in China.Infectious bacterial diseases such as Edwardsiella tarda imposed serious threats to this species.A potential strategy to prevent this disease is to select resistance strains.The aim of the present work was to estimate the genetic variation of disease resistance to E.tarda and to evaluate the genetic correlations between resistance traits and growth traits.Three types of models were fitted by using different trait definitions(binary,continuous and categorical).After a 9-day challenge test,the overall survival was 75.4%(ranging from 6.4%to 100%in families),and at test day 6,the overall survival was 50.7%.We set test day 6 and 9 as cut-off point times respectively.The heritabilities of survival traits were ranging from 0.10 to 0.36.Considerably higher heritability values were obtained at day 6 than at day 9,regardless of which model or trait definition used(except Trait 2 in LIN).The genetic correlations between disease resistance traits and growth traits(i.e.body weight and total length)were low and not significant from zero(−0.12–0.24).There is a substantial re-ranking of families when defined resistance as categorical and continuous traits compared to binary trait.These results confirm the existence of genetic variation for resistance against E.tarda and weak genetic correlations indicate that joint genetic improvement of E.tarda resistance and growth is scarcely available.
基金supported by Central Public-interest Scientific Institution Basal Research Fund CAFS(2016HY-ZD0201).
文摘In aquaculture,selective breeding for survival till harvest have become an alternative strategy for improving disease resistance and production.However,knowledge of genetic parameters of harvest survival,e.g.,heritability and genetic correlations between survival and growth rate traits,is still scarce.The aims of this study were to estimate genetic parameters for harvest survival and growth rate traits under commercial farming conditions in olive flounder(Paralichthys olivaceus).Harvest survival was defined as a binary trait;growth traits were measured as average daily gain(ADG),specific growth rate(SGR),daily growth coefficient(DGC)and body weight(BW).Data from a population of 241 full-sib families(involving 39,904 individuals,four generations)were used.Heritabilities of survival were low but significant,which were 0.15±0.04 and 0.22±0.01 on observed and underlying scale,respectively.Heritability estimates for ADG,SGR and DGC were medium to high,which were 0.33±0.06,0.83±0.07,0.58±0.07,respectively.While the heritability of BW is of low magnitude(0.17±0.08).The genetic correlations between harvest survival and three growth rate traits(i.e.,ADG,SGR and DGC)were very strong(ranging from 0.66 to 0.79),which is an exciting result.However,the genetic correlation between harvest survival and BW was much lower(0.17±0.08).These results suggest that selection for harvest survival would consequentially result in concomitant increase of growth rate,and vice versa.Our findings revealed novel insights into the genetic improvement of growth rate and harvest survival through genetic selection in olive flounder.
基金This work was supported by Central Public-interest Scientific Institution Basal Research Fund,CAFS,China(NO.2016HY-ZD0201)Taishan Scholar Project Fund of Shandong of China.
文摘The aim of this study was to evaluate genetic parameters of growth traits for improving selective breeding in olive flounder(Paralichthys olivaceus).A total of 82 full-sib families from 2 year-classes with complete pedigree information were used to estimate heritabilities and genetic/phenotypic correlations for 4 growth performance traits(body weight BW,total length TL,body height BH and condition factor K)based on uni-trait and multi-trait linear mixed models,respectively.Data were analyzed by the restricted maximum likelihood(REML)method.The heritabilities of BW,TL and BH were 0.81,0.70 and 0.61,which are relatively high,however,heritability for K is low(0.11).For all growth traits,the common full-sib effects(c^(2))were at a low to moderate level(0.14–0.20);the maternal effects(m^(2))of the traits(except K)were also detected(0.15–0.19).The phenotypic and genetic correlations among BW,TL and BH were highly positive(0.70–0.91),however,the correlations between K and the other 3 traits was low or negligible(−0.22–0.26).According to our results,these traits(except K)could be selected and enhanced simultaneously.In addition,direct selection based on TL or BH,which is an easily measurable trait,will be more favorable than selection on BW.Moreover,our results indicated that growth parameters estimated in the juvenile stage could be used as a predictor of growth performance at later growth stages.
基金This work was supported by the Federal Ministry of Education and Research,Germany(No.01E01501.AD2-7117 to MS).
文摘Body height,body mass index,hip and waist circumference are important risk factors or outcome variables in clinical and epidemiological research with complex underlying genetics.However,these classical anthropometric traits represent only a very limited view on the human body and other traits with potentially higher functional specificity are not yet studied to a larger extent.Participants of LIFE-Adult were assessed by three-dimensional body scanner VITUS XXL determining 99 high-quality anthropometric traits in parallel.Genotyping was performed by Axiom Genome-Wide CEU 1 Array Plate microarray technology and imputation was done using 1000 Genomes phase 3 reference panel.Combined phenotype and genetic information are available for a total of 7,562 participants.Largest heritabilities were estimated for height traits(maximum heritability with h2=44%for neck height)and 61 traits achieved values larger than 20%.By genome-wide analyses,we identified 16 loci associated with at least one of the 99 traits.Ten of these loci were not described for association with classical anthropometric traits so far.The strongest novel association was observed for 7p14.3(rs11979006,P=2.12×10^(-9))for the trait Back Width with ZNRF2 as the most plausible candidate gene.Loci established for association with classical anthropometric traits were subjected to anthropometric phenome-wide association analysis.From the reported 709 loci,211 are.coassociated with body scanner traits(enrichment:OR=1.96,P=1.08×10^(-61)).We conclude that genetics of 3D laser-based anthropometry is promising to identify novel loci and to improve the functional understanding of established ones.
基金supported by the National Key R&D Program of China(Nos.2022YFC3600600,2022YFC3600604)the National Natural Science Foundation of China(Nos.U22A20359,81874283,and 81673255)+2 种基金the Recruitment Program for Young Professionals of Chinathe Promotion Plan for Basic Medical Sciencesthe Development Plan for Cutting-Edge Disciplines,Sichuan University.
文摘Background:While type 2 diabetes mellitus(T2DM)is considered a putative causal risk factor for coronary artery disease(CAD),the intrinsic link underlying T2DM and CAD is not fully understood.We aimed to highlight the importance of integrated care targeting both diseases by investigating the phenotypic and genetic relationships between T2DM and CAD.Methods:We evaluated phenotypic associations using data from the United Kingdom Biobank(N=472,050).We investigated genetic relationships by leveraging genomic data conducted in European ancestry for T2DM,with and without adjustment for body mass index(BMI)(T2DM:N_(case)/N_(control)=74,124/824,006;T2DM adjusted for BMI[T2DM_(adj)BMI]:N_(case)/N_(control)=50,409/523,897)and for CAD(N_(case)/N_(control)=181,522/984,168).We performed additional analyses using genomic data conducted in multiancestry individuals for T2DM(N_(case)/N_(control)=180,834/1,159,055).Results:Observational analysis suggested a bidirectional relationship between T2DM and CAD(T2DM→CAD:hazard ratio[HR]=2.12,95%confidence interval[CI]:2.01–2.24;CAD→T2DM:HR=1.72,95%CI:1.63–1.81).A positive overall genetic correlation between T2DM and CAD was observed(r_(g)=0.39,P=1.43×10^(-75)),which was largely independent of BMI(T2DM_(adj)BMI–CAD:r_(g)=0.31,P=1.20×10^(–36)).This was corroborated by six local signals,among which 9p21.3 showed the strongest genetic correlation.Cross-trait meta-analysis replicated 101 previously reported loci and discovered six novel pleiotropic loci.Mendelian randomization analysis supported a bidirectional causal relationship(T2DM→CAD:odds ratio[OR]=1.13,95%CI:1.11-1.16;CAD→T2DM:OR=1.12,95%CI:1.07-1.18),which was confirmed in multiancestry individuals(T2DM→CAD:OR=1.13,95%CI:1.10-1.16;CAD→T2DM:OR=1.08,95%CI:1.04-1.13).This bidirectional relationship was significantly mediated by systolic blood pressure and intake of 3-hydroxy-3-methylglutaryl coenzyme A reductase inhibitors,with mediation proportions of 54.1%(95%CI:24.9-83.4%)and 90.4%(95%CI:29.3-151.5%),respectively.Conclusion:Our observational and genetic analyses demonstrated an intrinsic bidirectional relationship between T2DM and CAD and clarified the biological mechanisms underlying this relationship.
