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Cloning and Sequence Analysis of Interleukin-2 Gene in Gaoyou Ducks
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作者 CHEN Cheng SHE Bu-hong REN Chun-zhi TAO Jian-ping XU Jin-jun 《Animal Husbandry and Feed Science》 CAS 2010年第5期21-23,共3页
[ Objective] To clone and analyze the intedeukin-2 (IL.2) gene in Gaoyou ducks. [ Method] With total RNA isolated from peripheral lym- phocytes of Gaoyou ducks as templates, one pair of primers was designed accordin... [ Objective] To clone and analyze the intedeukin-2 (IL.2) gene in Gaoyou ducks. [ Method] With total RNA isolated from peripheral lym- phocytes of Gaoyou ducks as templates, one pair of primers was designed according to the known IL-2 gene sequence in ducks. The IL-2 DNA was amplified by the RT-PCR and inserted into pGEM-T-easy vector. Then the positive recombinant plasmid was sequenced. [ Result] The amplified target fragment was 433 bp with the correct size as theoretically expected. The open reading frame (ORF) was 423 bp encoding a precursor protein with 140 amino acids which consisted of a signal peptide composed of 21 amino acids and a mature peptide composed of 119 amino acids. The pro- tein was approximately 13.66 kDa and contained one N-glycosylation site. The sequence of IL-2 gene of Gaoyou duck had 99.8% nucleotide homol- ogy to that of Anas platyrhynchos duck, Gushi duck and Shaoxing duck, respectively. It also had 99.3% nucleotide homology to that of Guangzhou duck. [ Conclusion] The coding region of IL-2 gene of ducks is highly conserved. 展开更多
关键词 Gaoyou ducks interleukin-2 gene Sequence analysis
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Sequence Analysis on Interleukin-2 Gene and Interleukin-6 Gene in a Hybrid Pig 被引量:1
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作者 SHEN Zhi-qiang WANG Ming +3 位作者 ZHAO De-ming WANG Jin-liang TANG Na QU Guang-gang 《Animal Husbandry and Feed Science》 CAS 2010年第1期20-23,共4页
[ Objective] To understand the functions of interteukin-2 (IL-2) and interleukin-6 (IL-6) in immune response. [ Method] Peripheral lymphocytas were isolated from a hybrid pig ( Duroc x Landrace x Shandong local ... [ Objective] To understand the functions of interteukin-2 (IL-2) and interleukin-6 (IL-6) in immune response. [ Method] Peripheral lymphocytas were isolated from a hybrid pig ( Duroc x Landrace x Shandong local pig) and stimulated with canavalin A in vitro. With total RNA as templates, the IL-2 and IL-6 cDNA were amplified by the RT-PCR and sequenced, respectively. [Result] The sequence of IL-2 gene had 100.0% nucleotide homology to the published IL-2 sequences. The sequence of IL-6 gene had 99.8% -100.0% nucleotide homology to the published IL-6 sequences, and the amino acid homology was 99.1% -100.0%. [ Conclusion] NO great variation of the IL-2 gene and IL-6 gene is observed in the hybdd pig, and these results provide a basis for research about functions of IL-2 and IL-6 protein. 展开更多
关键词 interleukin-2 interleukin-6 CLONING Sequence analysis PIG
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A variant in interleukin-2 gene is associated with repeated spontaneous abortion in Ningxia Han people
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作者 Liguo Pei Fan Yang +4 位作者 Chuan Zhang Mengjing Guo Junhua Bao Hong Lu Zhenghao Huo 《Open Journal of Obstetrics and Gynecology》 2013年第5期32-36,共5页
Background: Recurrent spontaneous abortion (RSA) is defined as the occurrence of three or more consecutive spontaneous abortion prior to 20 weeks from the last menstrual period. It affects approximately 1% to 2% of wo... Background: Recurrent spontaneous abortion (RSA) is defined as the occurrence of three or more consecutive spontaneous abortion prior to 20 weeks from the last menstrual period. It affects approximately 1% to 2% of women, and about 40% - 80% of RSA are still remained unexplained. In recent years, a lot of studies suggest that RSA is caused by the immune factors. T helper 1(Th1)-type immunity is associated with unsuccessful pregnancy especially in women with RSA, while Th2-type immunity is associated with pregnancy success. Interleukin (IL)-2 may influence Th1/Th2 immune responsiveness and has been implicated association with RSA. Aim: The aim of this study was to investigate the association of the interleukin 2 (IL-2) promoter polymorphisms at the site ‐330 A/C (rs2069762) with RSA. Methods: The study group comprised 189 women with RSA, and the control group consisted of 187 healthy pregnant women. Gene polymorphisms were detected by the technique of polymerase chain reaction restriction fragment length polymorphism. Results: The frequency of genotype ‐330C/C was significant higher (χ2 = 7.266, p = 0.007, OR = 0.362, 95% CI = 0.169 - 0.777) in the control group than in the patient group. And the frequency of the -330Aallele was significant higher (χ2 = 11.862, p = 0.001, OR = 1.741, 95% CI = 1.268 - 2.389) in the patient group than in the control group. Conclusions: This study indicated that the IL-2-330Aallele may be considered as a risk factor for RSA. C→A mutation is may associated with RSA in Ningxia Han people. 展开更多
关键词 Repeated SPONTANEOUS ABORTION interleukin-2 POLYMORPHISM
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Identification of hub genes associated with Helicobacter pylori infection and type 2 diabetes mellitus:A pilot bioinformatics study 被引量:1
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作者 Han Chen Guo-Xin Zhang Xiao-Ying Zhou 《World Journal of Diabetes》 SCIE 2024年第2期170-185,共16页
BACKGROUND Helicobacter pylori(H.pylori)infection is related to various extragastric diseases including type 2 diabetes mellitus(T2DM).However,the possible mechanisms connecting H.pylori infection and T2DM remain unkn... BACKGROUND Helicobacter pylori(H.pylori)infection is related to various extragastric diseases including type 2 diabetes mellitus(T2DM).However,the possible mechanisms connecting H.pylori infection and T2DM remain unknown.AIM To explore potential molecular connections between H.pylori infection and T2DM.METHODS We extracted gene expression arrays from three online datasets(GSE60427,GSE27411 and GSE115601).Differentially expressed genes(DEGs)commonly present in patients with H.pylori infection and T2DM were identified.Hub genes were validated using human gastric biopsy samples.Correlations between hub genes and immune cell infiltration,miRNAs,and transcription factors(TFs)were further analyzed.RESULTS A total of 67 DEGs were commonly presented in patients with H.pylori infection and T2DM.Five significantly upregulated hub genes,including TLR4,ITGAM,C5AR1,FCER1G,and FCGR2A,were finally identified,all of which are closely related to immune cell infiltration.The gene-miRNA analysis detected 13 miRNAs with at least two gene cross-links.TF-gene interaction networks showed that TLR4 was coregulated by 26 TFs,the largest number of TFs among the 5 hub genes.CONCLUSION We identified five hub genes that may have molecular connections between H.pylori infection and T2DM.This study provides new insights into the pathogenesis of H.pylori-induced onset of T2DM. 展开更多
关键词 Helicobacter pylori Type 2 diabetes mellitus Bioinformatics analysis Differentially expressed genes Hub genes
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应用Minigene剪接变异体分析技术诊断PMM2基因非经典剪接位点新变异的致病性
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作者 周琴 林伟霞 宋元宗 《暨南大学学报(自然科学与医学版)》 CAS 北大核心 2024年第2期124-131,共8页
目的:研究Minigene剪接变异体分析技术在诊断磷酸甘露糖变位酶2(PMM2)相关先天性糖基化障碍(PMM2-CDG)中的价值,探讨磷酸甘露糖变位酶2(PMM2)基因剪接位点新变异对其转录产物的影响。方法:通过对1例PMM2-CDG患儿进行高通量测序查找可能... 目的:研究Minigene剪接变异体分析技术在诊断磷酸甘露糖变位酶2(PMM2)相关先天性糖基化障碍(PMM2-CDG)中的价值,探讨磷酸甘露糖变位酶2(PMM2)基因剪接位点新变异对其转录产物的影响。方法:通过对1例PMM2-CDG患儿进行高通量测序查找可能的遗传学病因,利用Minigene剪接变异体分析技术,研究PMM2基因新剪接位点变异的致病性。根据美国医学遗传学与基因组学学会(ACMG)指南,判断新变异的致病性。结果:遗传学分析发现患儿系PMM2基因母源性c.691G>A(p.Val231Met)变异和父源性c.447+5G>A变异复合杂合子。Minigene剪接变异体分析发现:变异c.447+5G>A导致PMM2基因转录产物形成r.348_447del转录本,为致病性PMM2基因变异。患儿的临床特征为皮肤巩膜黄染,血清总胆红素、非结合胆红素和总胆汁酸明显升高,白蛋白明显降低,甲胎蛋白、铁蛋白和促甲状腺素等升高,对症支持治疗效果欠佳。结论:Minigene剪接变异体分析可为PMM2-CDG确诊和家系遗传咨询提供新的分子标记物,扩展了PMM2基因变异谱,为该病的临床诊治提供新的参考依据。 展开更多
关键词 磷酸甘露糖变位酶2(PMM2)基因 PMM2相关先天性糖基化障碍(PMM2-CDG) Minigene剪接变异体分析
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Interleukin-1 receptor associated kinase 2 is a functional downstream regulator of complement factor D that controls mitochondrial fitness in diabetic cardiomyopathy
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作者 Stanislovas S.Jankauskas Fahimeh Varzideh +4 位作者 Pasquale Mone Urna Kansakar Francesco Di Lorenzo Angela Lombardi Gaetano Santulli 《Military Medical Research》 SCIE CAS CSCD 2024年第5期794-796,共3页
Diabetic cardiomyopathy is a disorder of the cardiac muscle that affects patients with diabetes.The exact mechanisms underlying diabetic cardiomyopathy are mostly unknown,but several factors have been implicated in th... Diabetic cardiomyopathy is a disorder of the cardiac muscle that affects patients with diabetes.The exact mechanisms underlying diabetic cardiomyopathy are mostly unknown,but several factors have been implicated in the pathogenesis of the disease and its progression towards heart failure,including endothelial dysfunction,autonomic neuropathy,metabolic alterations,oxidative stress,and alterations in ion homeostasis,especially calcium transients[1].In Military Medical Research,Jiang et al.[2]sought to determine the functional role of complement factor D(Adipsin)in the pathophysiology of diabetic cardiomyopathy. 展开更多
关键词 Adipsin Complement factor D interleukin-1 interleukin-1 receptor-associated kinase like 2(Irak2) Opa1 Prohibitin(PHB)
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Evaluating the role of interleukin-2 and interleukin-12 in pediatric patients with concurrent Mycoplasma pneumoniae and Epstein-Barr virus infections
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作者 Yan-Ping Hao 《World Journal of Clinical Cases》 SCIE 2024年第23期5346-5353,共8页
BACKGROUND Mycoplasma pneumoniae(MP)frequently causes respiratory infections in children,whereas Epstein-Barr virus(EBV)typically presents subclinical manifestations in immunocompetent pediatric populations.The incide... BACKGROUND Mycoplasma pneumoniae(MP)frequently causes respiratory infections in children,whereas Epstein-Barr virus(EBV)typically presents subclinical manifestations in immunocompetent pediatric populations.The incidence of MP and EBV coinfections is often overlooked clinically,with the contributory role of EBV in pulmonary infections alongside MP remaining unclear.AIM To evaluate the serum concentrations of interleukin-2(IL-2)and interleukin-12(IL-12)in pediatric patients with MP pneumonia co-infected with EBV and assess their prognostic implications.METHODS We retrospectively analyzed clinical data from patients diagnosed with MP and EBV co-infection,isolated MP infection,and a control group of healthy children,spanning from January 1,2018 to December 31,2021.Serum IL-2 and IL-12 levels were quantified using enzyme-linked immunosorbent assay.Logistic regression was employed to identify factors influencing poor prognosis,while receiver operating characteristic(ROC)curves evaluated the prognostic utility of serum IL-2 and IL-12 levels in co-infected patients.RESULTS The co-infection group exhibited elevated serum IL-2 and C-reactive protein(CRP)levels compared to both the MP-only and control groups,with a reverse trend observed for IL-12(P<0.05).In the poor prognosis cohort,elevated CRP and IL-2 levels,alongside prolonged fever duration,contrasted with reduced IL-12 levels(P<0.05).Logistic regression identified elevated IL-2 as an independent risk factor and high IL-12 as a protective factor for adverse outcomes(P<0.05).ROC analysis indicated that the area under the curves for IL-2,IL-12,and their combination in predicting poor prognosis were 0.815,0.895,and 0.915,respectively.CONCLUSION Elevated serum IL-2 and diminished IL-12 levels in pediatric patients with MP and EBV co-infection correlate with poorer prognosis,with combined IL-2 and IL-12 levels offering enhanced predictive accuracy. 展开更多
关键词 interleukin-2 interleukin-12 Mycoplasma pneumonia Epstein-Barr virus COINFECTION
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Vanillylacetone attenuates cadmium chloride-induced hippocampal damage and memory loss through upregulation of nuclear factor erythroid 2-related factor 2 gene and protein expression
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作者 Fahaid H.A.L-Hashem Salah O.Bashir +4 位作者 Amal F.Dawood Moutasem S.Aboonq Ismaeel Bin-Jaliah Abdulaiziz M.Al-Garni Mohamed D.Morsy 《Neural Regeneration Research》 SCIE CAS CSCD 2024年第12期2750-2759,共10页
Memory loss and dementia are major public health concerns with a substantial economic burden.Oxidative stress has been shown to play a crucial role in the pathophysiology of hippocampal damage-induced memory impairmen... Memory loss and dementia are major public health concerns with a substantial economic burden.Oxidative stress has been shown to play a crucial role in the pathophysiology of hippocampal damage-induced memory impairment.To investigate whether the antioxidant and anti-inflammatory compound vanillyla cetone(zingerone) can protect against hippocampal damage and memory loss induced by cadmium chloride(CdCl_(2)) administration in rats,we explo red the potential involvement of the nuclear factor erythroid 2-related factor 2(Nrf2) signaling pathway,which is known to modulate oxidative stress and inflammation.Sixty healt hy male Wistar rats were divided into five groups:vehicle-treated(control),vanillylacetone,CdCl_(2),vanillylacetone+ CdCl_(2),vanillylacetone+ CdCl_(2)+ brusatol(a selective pharmacological N rf2inhibitor) groups.Vanillylacetone effectively attenuated CdCl_(2)-induced damage in the dental gyrus of the hippocampus and improved the memory function assessed by the Morris Water Maze test.Additionally,vanillylacetone markedly decreased the hippocampal tissue levels of inflammatory biomarkers(interleukin-6,tumor necrosis factor-α,intracellular cell adhesive molecules) and apoptosis biomarkers(Bax and cleaved caspase-3).The control and CdCl_(2)-treated groups treated with va nillylacetone showed reduced generation of reactive oxygen species,decreased malondialdehyde levels,and increased superoxide dismutase and glutathione activities,along with significant elevation of nuclear Nrf2 mRNA and protein expression in hippocampal tissue.All the protective effects of vanillylacetone we re substantially blocked by the co-administration of brusatol(a selective N rf2 inhibitor).Va nillylacetone mitigated hippocampal damage and memory loss induced by CdCl_(2),at least in part, by activating the nuclear transcription factor Nrf2.Additionally,vanillylacetone exerted its potent antioxidant and antiinflammatory actions. 展开更多
关键词 HIPPOCAMPUS NEUROPROTECTIVE Nrf2 gene oxidative stress vanillylacetone
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To Analyze the Sensitivity of RT-PCR Assays Employing S Gene Target Failure with Whole Genome Sequencing Data during Third Wave by SARS-CoV-2 Omicron Variant
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作者 Pooja Patel Yogita Mistry +1 位作者 Monika Patel Summaiya Mullan 《Advances in Microbiology》 CAS 2024年第5期247-255,共9页
Introduction: Omicron is a highly divergent variant of concern (VOCs) of a severe acute respiratory syndrome SARS-CoV-2. It carries a high number of mutations in its spike protein hence;it is more transmissible in the... Introduction: Omicron is a highly divergent variant of concern (VOCs) of a severe acute respiratory syndrome SARS-CoV-2. It carries a high number of mutations in its spike protein hence;it is more transmissible in the community by immune evasion mechanisms. Due to mutation within S gene, most Omicron variants have reported S gene target failure (SGTF) with some commercially available PCR kits. Such diagnostic features can be used as markers to screen Omicron. However, Whole Genome Sequencing (WGS) is the only gold standard approach to confirm novel microorganisms at genetically level as similar mutations can also be found in other variants that are circulating at low frequencies worldwide. This Retrospective study is aimed to assess RT-PCR sensitivity in the detection of S gene target failure in comparison with whole genome sequencing to detect variants of Omicron. Methods: We have analysed retrospective data of SARS-CoV-2 positive RT-PCR samples for S gene target failure (SGTF) with TaqPath COVID-19 RT-PCR Combo Kit (ThermoFisher) and combined with sequencing technologies to study the emerged pattern of SARS-CoV-2 variants during third wave at the tertiary care centre, Surat. Results: From the first day of December 2021 till the end of February 2022, a total of 321,803 diagnostic RT-PCR tests for SARS-CoV-2 were performed, of which 20,566 positive cases were reported at our tertiary care centre with an average cumulative positivity of 6.39% over a period of three months. In the month of December 21 samples characterized by the SGTF (70/129) were suggestive of being infected by the Omicron variant and identified as Omicron (B.1.1.529 lineage) when sequence. In the month of January, we analysed a subset of samples (n = 618) with SGTF (24%) and without SGTF (76%) with Ct values Conclusions: During the COVID-19 pandemic, it took almost more than 15 days to diagnose infection and identify pathogen by sequencing technology. In contrast to that molecular assay provided quick identification with the help of SGTF phenomenon within 5 hours of duration. This strategy helps scientists and health policymakers for the quick isolation and identification of clusters. That ultimately results in a decreased transmission of pathogen among the community. 展开更多
关键词 SARS-CoV-2 S gene Target Failure Whole Genome Sequencing Omicron
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Analysis of SMOC2 gene variants in familial and nonfamilial primary open angle glaucoma Pakistani patients
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作者 Ashok Kumar Narsani Feriha Fatima Khidri +7 位作者 Muhammad Rafiq Jalpa Bai Hina Shaikh Yar Muhammad Waryah Syed Habib Ahmed Naqvi Preety Kumari Mahesh Kumar Lohano Ali Muhammad Waryah 《International Journal of Ophthalmology(English edition)》 SCIE CAS 2024年第12期2185-2191,共7页
AIM:To find out the association of secreted protein acidic and rich in cysteine(SPARC)-related modular calcium binding 2(SMOC2)gene variants rs2255680 and rs13208776 with genotypic and phenotypic characteristics in bo... AIM:To find out the association of secreted protein acidic and rich in cysteine(SPARC)-related modular calcium binding 2(SMOC2)gene variants rs2255680 and rs13208776 with genotypic and phenotypic characteristics in both familial and non-familial primary open angle glaucoma(POAG)patients.METHODS:A total of 212 POAG patients,comprising 124 familial and 88 non-familial,were enrolled.For genotyping the SMOC2 variant rs2255680,amplification refractory mutation system(ARMS)-polymerase chain reaction(PCR)method and PCR-restriction fragment length polymorphism(PCR-RFLP)were utilized for analyzing rs13208776 variant.RESULTS:The mean age of familial POAG patients was 50.92±9.12y,with 78 males and 46 females.The mean age of non-familial POAG patients was 53.14±13.44y,with 52 males and 36 females.The SMOC2 gene variant rs13208776 showed the significant association with POAG between familial and non-familial groups.The homozygous G/G variant was frequent among non-familial(60.2%)whereas the heterozygous G/A variant was more frequent in familial POAG patients(46%).There were significant differences in G/A variant between familial and non-familial glaucoma patients,and the risk was decreased to 0.53-fold in non-familial glaucoma patients[odds ratio(OR):0.53;95%confidence interval(CI):0.29-0.94;P=0.033]in codominant model.The risk was further reduced to 0.49-fold(95%CI:0.28-0.86;P=0.012)in dominant model for non-familial patients.No significant association of SMOC2 gene variant rs2255680 between familial and non-familial glaucoma patients was found in our population.The haplotype analysis showed the decreased risk for TA[OR:0.48(95%CI:0.29-0.79);P=0.004]and an increased risk for TG[OR=2.28(95%CI:1.22-4.25);P=0.01]haplotypes.CONCLUSION:Current findings show significant association of SMOC2 gene variant rs13208776 with POAG between familial and non-familial Pakistani patients. 展开更多
关键词 GLAUCOMA primary open angle glaucoma SMOC2 gene VARIANT FAMILIAL non-familial
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AAV2-PDE6B restores retinal structure and function in the retinal degeneration 10 mouse model of retinitis pigmentosa by promoting phototransduction and inhibiting apoptosis
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作者 Ruiqi Qiu Mingzhu Yang +5 位作者 Xiuxiu Jin Jingyang Liu Weiping Wang Xiaoli Zhang Jinfeng Han Bo Lei 《Neural Regeneration Research》 SCIE CAS 2025年第8期2408-2419,共12页
Retinitis pigmentosa is a group of inherited diseases that lead to retinal degeneration and photoreceptor cell death.However,there is no effective treatment for retinitis pigmentosa caused by PDE6B mutation.Adeno-asso... Retinitis pigmentosa is a group of inherited diseases that lead to retinal degeneration and photoreceptor cell death.However,there is no effective treatment for retinitis pigmentosa caused by PDE6B mutation.Adeno-associated virus(AAV)-mediated gene therapy is a promising strategy for treating retinitis pigmentosa.The aim of this study was to explore the molecular mechanisms by which AAV2-PDE6B rescues retinal function.To do this,we injected retinal degeneration 10(rd10)mice subretinally with AAV2-PDE6B and assessed the therapeutic effects on retinal function and structure using dark-and light-adapted electroretinogram,optical coherence tomography,and immunofluorescence.Data-independent acquisition-mass spectrometry-based proteomic analysis was conducted to investigate protein expression levels and pathway enrichment,and the results from this analysis were verified by real-time polymerase chain reaction and western blotting.AAV2-PDE6B injection significantly upregulated PDE6βexpression,preserved electroretinogram responses,and preserved outer nuclear layer thickness in rd10 mice.Differentially expressed proteins between wild-type and rd10 mice were closely related to visual perception,and treating rd10 mice with AAV2-PDE6B restored differentially expressed protein expression to levels similar to those seen in wild-type mice.Kyoto Encyclopedia of Genes and Genome analysis showed that the differentially expressed proteins whose expression was most significantly altered by AAV2-PDE6B injection were enriched in phototransduction pathways.Furthermore,the phototransductionrelated proteins Pde6α,Rom1,Rho,Aldh1a1,and Rbp1 exhibited opposite expression patterns in rd10 mice with or without AAV2-PDE6B treatment.Finally,Bax/Bcl-2,p-ERK/ERK,and p-c-Fos/c-Fos expression levels decreased in rd10 mice following AAV2-PDE6B treatment.Our data suggest that AAV2-PDE6B-mediated gene therapy promotes phototransduction and inhibits apoptosis by inhibiting the ERK signaling pathway and upregulating Bcl-2/Bax expression in retinitis pigmentosa. 展开更多
关键词 APOPTOSIS AAV2-PDE6B ERK1/2 gene therapy PHOTOTRANSDUCTION PROTEOMICS rd10 retinitis pigmentosa
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Regulatory potential of soil available carbon,nitrogen,and functional genes on N_(2)O emissions in two upland plantation systems
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作者 Peng Xu Mengdie Jiang +4 位作者 Imran Khan Muhammad Shaaban Hongtao Wu Barthelemy Harerimana Ronggui Hu 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2024年第8期2792-2806,共15页
Dynamic nitrification and denitrification processes are affected by changes in soil redox conditions,and they play a vital role in regulating soil N_(2)O emissions in rice-based cultivation.It is imperative to underst... Dynamic nitrification and denitrification processes are affected by changes in soil redox conditions,and they play a vital role in regulating soil N_(2)O emissions in rice-based cultivation.It is imperative to understand the influences of different upland crop planting systems on soil N_(2)O emissions.In this study,we focused on two representative rotation systems in Central China:rapeseed–rice(RR)and wheat–rice(WR).We examined the biotic and abiotic processes underlying the impacts of these upland plantings on soil N_(2)O emissions.The results revealed that during the rapeseed-cultivated seasons in the RR rotation system,the average N_(2)O emissions were 1.24±0.20 and 0.81±0.11 kg N ha^(–1)for the first and second seasons,respectively.These values were comparable to the N_(2)O emissions observed during the first and second wheat-cultivated seasons in the WR rotation system(0.98±0.25 and 0.70±0.04 kg N ha^(–1),respectively).This suggests that upland cultivation has minimal impacts on soil N_(2)O emissions in the two rotation systems.Strong positive correlations were found between N_(2)O fluxes and soil ammonium(NH_(4)^(+)),nitrate(NO_(3)^(–)),microbial biomass nitrogen(MBN),and the ratio of soil dissolved organic carbon(DOC)to NO_(3)^(–)in both RR and WR rotation systems.Moreover,the presence of the AOA-amoA and nirK genes were positively associated with soil N_(2)O fluxes in the RR and WR systems,respectively.This implies that these genes may have different potential roles in facilitating microbial N_(2)O production in various upland plantation models.By using a structural equation model,we found that soil moisture,mineral N,MBN,and the AOA-amoA gene accounted for over 50%of the effects on N_(2)O emissions in the RR rotation system.In the WR rotation system,soil moisture,mineral N,MBN,and the AOA-amoA and nirK genes had a combined impact of over 70%on N_(2)O emissions.These findings demonstrate the interactive effects of functional genes and soil factors,including soil physical characteristics,available carbon and nitrogen,and their ratio,on soil N_(2)O emissions during upland cultivation seasons under rice-upland rotations. 展开更多
关键词 upland-rice cultivation N_(2)O emission regulatory factors functional genes
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Pathogenesis of chronic enteropathy associated with the SLCO2A1 gene:Hypotheses and conundrums
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作者 Zhi-Xin Xie Yue Li +2 位作者 Ai-Ming Yang Dong Wu Qiang Wang 《World Journal of Gastroenterology》 SCIE CAS 2024年第19期2505-2511,共7页
Chronic enteropathy associated with the SLCO2A1 gene(CEAS)is a complex gastroenterological condition characterized by multiple ulcers in the small intestine with chronic bleeding and protein loss.This review explores ... Chronic enteropathy associated with the SLCO2A1 gene(CEAS)is a complex gastroenterological condition characterized by multiple ulcers in the small intestine with chronic bleeding and protein loss.This review explores the potential mechanisms underlying the pathogenesis of CEAS,focusing on the role of SLCO2A1-encoded prostaglandin transporter OATP2A1 and its impact on prostaglandin E2(PGE2)levels.Studies have suggested that elevated PGE2 levels contribute to mucosal damage,inflammation,and disruption of the intestinal barrier.The effects of PGE2 on macrophage activation and Maxi-Cl channel functionality,as well as its interaction with nonsteroidal anti-inflammatory drugs play crucial roles in the progression of CEAS.Understanding the balance between its protective and pro-inflammatory effects and the complex interactions within the gastrointestinal tract can shed light on potential therapeutic targets for CEAS and guide the development of novel,targeted therapies. 展开更多
关键词 SLCO2A1 Prostaglandin E2 Chronic enteropathy associated with the SLCO2A1 gene Small intestine MACROPHAGE
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Transglutaminase 2 serves as a pathogenic hub gene of KRAS mutant colon cancer based on integrated analysis
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作者 Wei-Bin Peng Yu-Ping Li +1 位作者 Yong Zeng Kai Chen 《World Journal of Gastrointestinal Oncology》 SCIE 2024年第5期2074-2090,共17页
BACKGROUND Colon cancer is acknowledged as one of the most common malignancies worldwide,ranking third in United States regarding incidence and mortality.Notably,approximately 40%of colon cancer cases harbor oncogenic... BACKGROUND Colon cancer is acknowledged as one of the most common malignancies worldwide,ranking third in United States regarding incidence and mortality.Notably,approximately 40%of colon cancer cases harbor oncogenic KRAS mutations,resulting in the continuous activation of epidermal growth factor receptor signaling.AIM To investigate the key pathogenic genes in KRAS mutant colon cancer holds considerable importance.METHODS Weighted gene co-expression network analysis,in combination with additional bioinformatics analysis,were conducted to screen the key factors driving the progression of KRAS mutant colon cancer.Meanwhile,various in vitro experiments were also conducted to explore the biological function of transglutaminase 2(TGM2).RESULTS Integrated analysis demonstrated that TGM2 acted as an independent prognostic factor for progression-free survival.Immunohistochemical analysis on tissue microarrays revealed that TGM2 was associated with an elevated probability of perineural invasion in patients with KRAS mutant colon cancer.Additionally,biological roles of the key gene TGM2 was also assessed,suggesting that the downregulation of TGM2 attenuated the proliferation,invasion,and migration of the KRAS mutant colon cancer cell line.CONCLUSION This study underscores the potential significance of TGM2 in the progression of KRAS mutant colon cancer.This insight not only offers a theoretical foundation for therapeutic approaches but also highlights the need for additional clinical trials and fundamental research to support our preliminary findings. 展开更多
关键词 Colon cancer KRAS mutation Transglutaminase 2 Weighted gene co-expression network analysis
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Dielectric genetic tailoring strategy dominating MoSe_(2)@rGO assembled architecture with electromagnetic functions
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作者 Wen-Qiang Cao Qi Zheng +2 位作者 Lin Li Chuan-Bao Cao Mao-Sheng Cao 《Journal of Advanced Ceramics》 SCIE EI CAS CSCD 2024年第9期1461-1472,共12页
The intensification of electromagnetic(EM)pollution and the development of military detection technology have increased the requirements for EM functional materials.In this study,a molybdenum diselenide@reduced graphe... The intensification of electromagnetic(EM)pollution and the development of military detection technology have increased the requirements for EM functional materials.In this study,a molybdenum diselenide@reduced graphene oxide(MoSe_(2)@rGO)-assembled architecture is constructed,where the MoSe_(2) nanosheets grow uniformly on the rGO sheets.By regulating the contributions of conduction genes and polarization genes,adjustable EM functions of MoSe_(2)@rGO hybrids can be achieved.The reflection loss(RL)of the sample can reach−68.7 dB at a thickness of 2.32 mm,and the maximum effective absorption bandwidth can reach 5.04 GHz.When conduction genes dominate,the MoSe_(2)@rGO hybrids exhibit a 98.7%electromagnetic interference(EMI)shielding efficiency.The design of the EM energy conversion device and the results of the radar cross section(RCS)simulation demonstrate the practical application potential of the material.This work provides inspiration for designing multifunctional EM materials. 展开更多
关键词 MoSe_(2) graphene hybrids dielectric gene microwave absorption(MA) electromagnetic interference(EMI)shielding
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Gene expression analysis of cytokines and MMPs in melatonin and rhBMP-2 enhanced bone remodeling
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作者 Marina Ribeiro Paulini Letícia Ferreira Montarele +6 位作者 Dimitrius Leonardo Pitol Gisele Giannocco Bruno Fiorelini Pereira Daniela Vieira Buchaim Carlos Henrique Bertoni Reis Rogério Leone Buchaim Joao Paulo Mardegan Issa 《World Journal of Orthopedics》 2024年第11期1075-1087,共13页
BACKGROUND In the medical and dental fields,there is a need for studies of new therapeutic approaches for the treatment of bone defects that cause extensive bone loss.Melatonin may be an important endogenous biologica... BACKGROUND In the medical and dental fields,there is a need for studies of new therapeutic approaches for the treatment of bone defects that cause extensive bone loss.Melatonin may be an important endogenous biological factor for bone remodeling,and growth factors may enhance the repair process.AIM To evaluate the gene expression of cytokines(IL-1β,IL-6,IL-10 and TNF-α),markers of osteoclastogenesis(RANK,RANKL and OPG)and MMPs(MMP-1,MMP-2,MMP-8 and MMP-13)from the treatment of melatonin associated with an osteogenic membrane and rhBMP-2 on the recovery of a bone injury.METHODS Sixty-four rats were used and divided into 9 experimental groups and were formed according to the treatment carried out in the region of the bone lesion,which varied between the combination of 1,10 and 100μmol/L of melatonin.Gene Expression analysis was performed using real time-PCR by reading the concentration of total RNA and reverse transcription.RESULTS There were differences between groups when compared with clot or scaffold control,and improvement with a higher concentration of melatonin or rhBMP-2.The combination melatonin(1μg)with 5μg of rhBMP-2,using the guided bone regeneration technique,demonstrated some effects,albeit mild,on bone repair of critical bone defects.CONCLUSION This indicates that the approach for administering these substances needs to be reassessed,with the goal of ensuring their direct application to the affected area.Therefore,future research must be carried out,seeking to produce materials with these ideal characteristics. 展开更多
关键词 Bone repair MELATONIN gene expression RHBMP-2 SCAFFOLD Tissue engineering Guided bone regeneration
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Identification of M2 macrophage-related genes for establishing a prognostic model in pancreatic cancer: FCGR3A as key gene
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作者 ZHEN WANG JUN FU +6 位作者 SAISAI ZHU HAODONG TANG KUI SHI JIHUA YANG MENG WANG MENGGE WU DUNFENG QI 《Oncology Research》 SCIE 2024年第12期1851-1866,共16页
Background:Pancreatic ductal adenocarcinoma(PDAC)has a rich and complex tumor immune microenvironment(TIME).M2 macrophages are among the most extensively infiltrated immune cells in the TIME and are necessary for the g... Background:Pancreatic ductal adenocarcinoma(PDAC)has a rich and complex tumor immune microenvironment(TIME).M2 macrophages are among the most extensively infiltrated immune cells in the TIME and are necessary for the growth and migration of cancers.However,the mechanisms and targets mediating M2 macrophage infiltration in pancreatic cancer remain elusive.Methods:The M2 macrophage infiltration score of patients was assessed using the xCell algorithm.Using weighted gene co-expression network analysis(WGCNA),module genes associated with M2 macrophages were identified,and a predictive model was designed.The variations in immunological cell patterns,cancer mutations,and enrichment pathways between the cohorts with the high-and low-risk were examined.Additionally,the expression of FCGR3A and RNASE2,as well as their association with M2 macrophages were evaluated using the HPA,TNMplot,and GEPIA2 databases and verified by tissue immunofluorescence staining.Moreover,in vitro cell experiments were conducted,where FCGR3A was knocked down in pancreatic cancer cells using siRNA to analyze its effects on M2 macrophage infiltration,tumor proliferation,and metastasis.Results:The prognosis of patients in high-risk and low-risk groups was successfully distinguished using a prognostic risk score model of M2 macrophage-related genes(p=0.024).Between the high-and low-risk cohorts,there have been notable variations in immune cell infiltration patterns,tumor mutations,and biological functions.The risk score was linked to the manifestation of prevalent immunological checkpoints,immunological scores,and stroma values(all p<0.05).In vitro experiments and tissue immunofluorescence staining revealed that FCGR3A can promote the infiltration or polarization of M2 macrophages and enhance tumor proliferation and migration.Conclusions:In this study,an M2 macrophage-related pancreatic cancer risk score model was established,and found that FCGR3A was correlated with tumor formation,metastasis,and M2 macrophage infiltration. 展开更多
关键词 Pancreatic ductal adenocarcinoma(PDAC) M2 macrophages Weighted gene co-expression network analysis(WGCNA) CIBERSORT IMMUNIZATION PROGNOSIS
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鉴别猪圆环病毒2型和3型双重TaqMan MGB探针FQ-PCR检测方法研究 被引量:1
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作者 赵雪丽 闫若潜 +8 位作者 王华俊 王淑娟 马震原 谢彩华 柴茂 杨海波 王翠 刘影 王东方 《中国动物传染病学报》 CAS 北大核心 2024年第2期165-173,共9页
建立一种快速、特异鉴别检测猪圆环病毒2型(PCV2)和猪圆环病毒3型(PCV3)的双重TaqMan MGB探针FQ-PCR方法,本研究以PCV2的Rep蛋白和PCV3的Cap蛋白基因作为靶基因,各设计1对特异性引物和1条TaqMan MGB探针,经优化各反应条件和进行敏感性... 建立一种快速、特异鉴别检测猪圆环病毒2型(PCV2)和猪圆环病毒3型(PCV3)的双重TaqMan MGB探针FQ-PCR方法,本研究以PCV2的Rep蛋白和PCV3的Cap蛋白基因作为靶基因,各设计1对特异性引物和1条TaqMan MGB探针,经优化各反应条件和进行敏感性、特异性、重复性和干扰性试验,建立鉴别检测PCV2/PCV3的双重FQ-PCR方法。结果显示:该方法可特异性扩增PCV2、PCV3核酸,与猪伪狂犬病病毒(PRV)等8种病原及阴性对照无交叉反应,特异性较强;对PCV2和PCV3阳性质粒标准品的最低检出限均可达10 copies/μL,敏感性较高;PCV2/PCV3批内/批间重复试验变异系数(CV)值均在3%以下,表明方法稳定性、重复性较好;干扰性试验表明在两种病毒阳性质粒起始模板相差较大时该方法不会影响对其中任一病毒核酸的检出和准确定量。对42份临床疑似PCV感染样品检测结果与PCV2、PCV3基因测序结果符合率100%。本研究建立的双重FQ-PCR方法具有敏感性高达10 copies/μL、特异性强、在同一反应体系中能同时快速鉴别检测PCV2、PCV3等优点,可用于临床PCV2/PCV3感染的快速鉴别检测。 展开更多
关键词 猪圆环病毒2 rep基因 猪圆环病毒3型 cap基因 双重TaqMan MGB FQ-PCR
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丛枝菌根真菌对褐土玉米氮素吸收和土壤N_(2)O排放的影响 被引量:1
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作者 王艳芳 刘金钊 +1 位作者 李志超 刘领 《生态学报》 CAS CSCD 北大核心 2024年第5期1972-1984,共13页
探究不同氮肥水平下丛枝菌根(AM)真菌对褐土玉米土壤N_(2)O排放和氮转化功能基因的影响,为阐明AM真菌在褐土N_(2)O排放中的作用和效应提供理论依据。设置氮肥用量(NⅠ:105 mg/kg;NⅡ:210 mg/kg)、AM真菌(M0:不接种AM真菌;M1:接种根内根... 探究不同氮肥水平下丛枝菌根(AM)真菌对褐土玉米土壤N_(2)O排放和氮转化功能基因的影响,为阐明AM真菌在褐土N_(2)O排放中的作用和效应提供理论依据。设置氮肥用量(NⅠ:105 mg/kg;NⅡ:210 mg/kg)、AM真菌(M0:不接种AM真菌;M1:接种根内根孢囊霉(Rhizophagus intraradices);M2:接种摩西斗管囊霉(Funneliformis mosseae);M3:接种Rhizophagus intraradices+Funneliformis mosseae等比例混合)双因素盆栽试验。测定植株地上部全氮含量、土壤铵态氮、硝态氮含量和N_(2)O排放量,采用实时荧光定量聚合酶链式反应(PCR)法分析土壤硝化功能基因(amoA-AOA和amoA-AOB)和反硝化功能基因(nirS、nirK和nosZ)的丰度。结果表明,两种施氮水平下,接种AM真菌均可显著降低土壤N_(2)O排放通量和累积排放量,不同AM真菌处理下N_(2)O累积排放量表现为:M0>M2>M1>M3。相同AM真菌处理的土壤N_(2)O排放通量和累积排放量在NⅡ施氮水平高于NⅠ施氮水平;相同AM真菌处理的玉米菌根侵染率在NⅡ施氮水平低于NⅠ施氮水平。与M0相比,NⅠ条件下M1、M2和M3处理土壤铵态氮含量分别降低24.5%、20.8%和45.3%,硝态氮含量分别降低19.7%、14.9%和30.2%,植株地上部全氮含量分别增加16.3%、35.2%和59.6%;与M0相比,NⅡ条件下M1、M2和M3处理土壤铵态氮含量分别降低20.9%、24.8%和40.0%,硝态氮含量分别降低36.3%、25.6%和45.2%,植株地上部全氮含量分别增加33.2%、43.9%和95.4%。两种施氮水平下,AM真菌可显著降低土壤硝化功能基因(amoA-AOA和amoA-AOB)丰度,增加反硝化功能基因(nirS、nirK和nosZ)丰度。AM真菌与N_(2)O排放通量呈极显著负相关。本盆栽试验条件下,接种AM真菌均可增强两种氮肥用量玉米植株氮素吸收能力,调节硝化、反硝化相关功能基因的丰度,减少土壤N_(2)O气体的排放,且两种AM真菌混合处理的N_(2)O减排效应强于单一AM真菌接种。 展开更多
关键词 丛枝菌根真菌 N_(2)O排放 氮转化功能基因 褐土 玉米
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老年舒张性心力衰竭合并肌少症患者可溶性生长刺激表达基因2蛋白、肌红蛋白、白细胞介素-6水平与心功能的相关性
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作者 朱琪 季梅丽 庄世虹 《实用临床医药杂志》 CAS 2024年第9期57-61,共5页
目的 探讨老年舒张性心力衰竭(DHF)合并肌少症患者外周血可溶性生长刺激表达基因2蛋白(sST2)、肌红蛋白(Myo)、白细胞介素-6(IL-6)水平与心功能的相关性。方法 将122例DHF患者根据有无肌少症分为DHF合并肌少症组60例和DHF组62例,另将健... 目的 探讨老年舒张性心力衰竭(DHF)合并肌少症患者外周血可溶性生长刺激表达基因2蛋白(sST2)、肌红蛋白(Myo)、白细胞介素-6(IL-6)水平与心功能的相关性。方法 将122例DHF患者根据有无肌少症分为DHF合并肌少症组60例和DHF组62例,另将健康体检者58例、单纯肌少症患者60例分别纳入对照组、单纯肌少症组,检测各组外周血sST2、Myo、IL-6水平和心功能指标[左室射血分数(LVEF)、心排血量(CO)、心率(HR)、每搏输出量(SV)和心脏指数(CI)]。采用Pearson相关分析法分析sST2、Myo、IL-6与各心功能指标的相关性。绘制受试者工作特征(ROC)曲线,分析sST2、Myo、IL-6单独及联合诊断DHF合并肌少症的效能。结果 与对照组、单纯肌少症组相比,DHF组、DHF合并肌少症组sST2、Myo、IL-6水平和HR均升高,LVEF、CO、SV和CI均降低,差异有统计学意义(P<0.05);与DHF组相比,DHF合并肌少症组sST2、Myo、IL-6水平和HR均升高,LVEF、CO、SV和CI均降低,差异有统计学意义(P<0.05)。sST2、Myo、IL-6均分别与LVEF、CO、SV、CI呈负相关(P<0.001),均与HR呈正相关(P<0.001);sST2、Myo、IL-6、LVEF、SV是DHF合并肌少症的独立影响因素(P<0.05);sST2、Myo、IL-6联合诊断DHF合并肌少症的曲线下面积为0.936,诊断效能优于三者单独检测。结论 老年DHF合并肌少症患者外周血sST2、Myo、IL-6水平显著升高,且sST2、Myo、IL-6均与心功能指标显著相关,三者联合检测对DHF合并肌少症的诊断效能较高。 展开更多
关键词 可溶性生长刺激表达基因2蛋白 肌红蛋白 白细胞介素-6 舒张性心力衰竭 肌少症 心功能
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