[Objectives]To clone the pepck gene of Vibrio alginolyticus strain HY9901 and analyze its sequence by bioinformatics.[Methods]According to the complete gene sequence of V.alginolyticus on GenBank,specific primers were...[Objectives]To clone the pepck gene of Vibrio alginolyticus strain HY9901 and analyze its sequence by bioinformatics.[Methods]According to the complete gene sequence of V.alginolyticus on GenBank,specific primers were designed to amplify the target gene pepck by PCR.The sequence of the pepck gene was analyzed using bioinformatics.The phylogenic tree of pepck gene and the corresponding single-subunit three-dimensional structure were constructed.[Results]The pepck gene of V.alginolyticus strain HY9901 has a full length of 1629 bp,with theoretical molecular weight of 60.12 kD.The prediction results show that there is no signal peptide or transmembrane region at the N-terminus of the sequence,the amino acid sequence contains 11 phosphorylation sites of casein kinase II.The prediction results of protein subcellular localization indicate that PEPEK protein is localized in the cytoplasm.The protein is stable and hydrophobic.The tertiary structure of the PEPCK protein of V.alginolyticus is similar to that of Vibrio parahaemolyticus.It is predicted that PEPCK has a major functional domain PEPCK_ATP.In the secondary structure,alpha helix,random coil,and extended strand accounted for 21.96%,52.03%and 26.01%,respectively.The PEPCK homology between V.alginolyticus and Vibrio diabolicus is as high as 99%.[Conclusions]This study lays the foundation for further understanding the function of pepck gene in V.alginolyticus.展开更多
目的选取婴儿利什曼原虫的Pepck和Gp63的优势表位基因,构建Pepck-Gp63二联优势表位的原核与真核重组表达载体并表达蛋白。方法用计算机分析预测磷酸烯醇丙酮酸羧基酶(phosphoenolpyruvate carboxylase,PEPCK)的二级结构及HLA表位,筛选...目的选取婴儿利什曼原虫的Pepck和Gp63的优势表位基因,构建Pepck-Gp63二联优势表位的原核与真核重组表达载体并表达蛋白。方法用计算机分析预测磷酸烯醇丙酮酸羧基酶(phosphoenolpyruvate carboxylase,PEPCK)的二级结构及HLA表位,筛选出优势表位。根据本实验室之前对表面蛋白酶63(glycoprotein of 63×10^(3),GP63)用相同的方法分析而筛选的表位结果,把Pepck和Gp63的优势表位基因通过重叠PCR和酶切连接反应构建出重组原核表达质粒pET32a-Pepck-Gp63,并诱导其在大肠杆菌中表达;构建出重组真核表达质粒pVAX1-Pepck-Gp63,用脂质体转染法把真核质粒转染到NIH3T3细胞中表达。结果Pepck存在多个优势表位;测序结果表明二联优势表位基因Pepck-Gp63连接成功;PEPCK-GP63蛋白在大肠杆菌中以包涵体形式表达并在SDS-PAGE电泳-考马斯亮蓝染色的结果中呈现相对分子质量为74×10^(3)大小的条带;细胞免疫荧光中被pVAX1-Pepck-Gp63转染的NIH3T3细胞呈阳性。结论成功构建重组原核表达质粒pET32a-Pepck-Gp63和重组真核表达质粒pVAX1-Pepck-Gp63,并分别在大肠杆菌和NIH3T3细胞中验证重组质粒能表达相应目的蛋白,为后续的免疫策略研究提供初步实验基础。展开更多
基金Shenzhen Science and Technology Project(JCYJ2019081310-4207152,JCYJ20170818111629778)Undergraduate Innovative and Entrepreneurial Team Project。
文摘[Objectives]To clone the pepck gene of Vibrio alginolyticus strain HY9901 and analyze its sequence by bioinformatics.[Methods]According to the complete gene sequence of V.alginolyticus on GenBank,specific primers were designed to amplify the target gene pepck by PCR.The sequence of the pepck gene was analyzed using bioinformatics.The phylogenic tree of pepck gene and the corresponding single-subunit three-dimensional structure were constructed.[Results]The pepck gene of V.alginolyticus strain HY9901 has a full length of 1629 bp,with theoretical molecular weight of 60.12 kD.The prediction results show that there is no signal peptide or transmembrane region at the N-terminus of the sequence,the amino acid sequence contains 11 phosphorylation sites of casein kinase II.The prediction results of protein subcellular localization indicate that PEPEK protein is localized in the cytoplasm.The protein is stable and hydrophobic.The tertiary structure of the PEPCK protein of V.alginolyticus is similar to that of Vibrio parahaemolyticus.It is predicted that PEPCK has a major functional domain PEPCK_ATP.In the secondary structure,alpha helix,random coil,and extended strand accounted for 21.96%,52.03%and 26.01%,respectively.The PEPCK homology between V.alginolyticus and Vibrio diabolicus is as high as 99%.[Conclusions]This study lays the foundation for further understanding the function of pepck gene in V.alginolyticus.
文摘目的选取婴儿利什曼原虫的Pepck和Gp63的优势表位基因,构建Pepck-Gp63二联优势表位的原核与真核重组表达载体并表达蛋白。方法用计算机分析预测磷酸烯醇丙酮酸羧基酶(phosphoenolpyruvate carboxylase,PEPCK)的二级结构及HLA表位,筛选出优势表位。根据本实验室之前对表面蛋白酶63(glycoprotein of 63×10^(3),GP63)用相同的方法分析而筛选的表位结果,把Pepck和Gp63的优势表位基因通过重叠PCR和酶切连接反应构建出重组原核表达质粒pET32a-Pepck-Gp63,并诱导其在大肠杆菌中表达;构建出重组真核表达质粒pVAX1-Pepck-Gp63,用脂质体转染法把真核质粒转染到NIH3T3细胞中表达。结果Pepck存在多个优势表位;测序结果表明二联优势表位基因Pepck-Gp63连接成功;PEPCK-GP63蛋白在大肠杆菌中以包涵体形式表达并在SDS-PAGE电泳-考马斯亮蓝染色的结果中呈现相对分子质量为74×10^(3)大小的条带;细胞免疫荧光中被pVAX1-Pepck-Gp63转染的NIH3T3细胞呈阳性。结论成功构建重组原核表达质粒pET32a-Pepck-Gp63和重组真核表达质粒pVAX1-Pepck-Gp63,并分别在大肠杆菌和NIH3T3细胞中验证重组质粒能表达相应目的蛋白,为后续的免疫策略研究提供初步实验基础。
