Virtual machine(VM)consolidation is an effective way to improve resource utilization and reduce energy consumption in cloud data centers.Most existing studies have considered VM consolidation as a bin-packing problem,...Virtual machine(VM)consolidation is an effective way to improve resource utilization and reduce energy consumption in cloud data centers.Most existing studies have considered VM consolidation as a bin-packing problem,but the current schemes commonly ignore the long-term relationship between VMs and hosts.In addition,there is a lack of long-term consideration for resource optimization in the VM consolidation,which results in unnecessary VM migration and increased energy consumption.To address these limitations,a VM consolidation method based on multi-step prediction and affinity-aware technique for energy-efficient cloud data centers(MPaAF-VMC)is proposed.The proposed method uses an improved linear regression prediction algorithm to predict the next-moment resource utilization of hosts and VMs,and obtains the stage demand of resources in the future period through multi-step prediction,which is realized by iterative prediction.Then,based on the multi-step prediction,an affinity model between the VM and host is designed using the first-order correlation coefficient and Euclidean distance.During the VM consolidation,the affinity value is used to select the migration VM and placement host.The proposed method is compared with the existing consolidation algorithms on the PlanetLab and Google cluster real workload data using the CloudSim simulation platform.Experimental results show that the proposed method can achieve significant improvement in reducing energy consumption,VM migration costs,and service level agreement(SLA)violations.展开更多
Affinity propagation(AP)is a widely used exemplar-based clustering approach with superior efficiency and clustering quality.Nevertheless,a common issue with AP clustering is the presence of excessive exemplars,which l...Affinity propagation(AP)is a widely used exemplar-based clustering approach with superior efficiency and clustering quality.Nevertheless,a common issue with AP clustering is the presence of excessive exemplars,which limits its ability to perform effective aggregation.This research aims to enable AP to automatically aggregate to produce fewer and more compact clusters,without changing the similarity matrix or customizing preference parameters,as done in existing enhanced approaches.An automatic aggregation enhanced affinity propagation(AAEAP)clustering algorithm is proposed,which combines a dependable partitioning clustering approach with AP to achieve this purpose.The partitioning clustering approach generates an additional set of findings with an equivalent number of clusters whenever the clustering stabilizes and the exemplars emerge.Based on these findings,mutually exclusive exemplar detection was conducted on the current AP exemplars,and a pair of unsuitable exemplars for coexistence is recommended.The recommendation is then mapped as a novel constraint,designated mutual exclusion and aggregation.To address this limitation,a modified AP clustering model is derived and the clustering is restarted,which can result in exemplar number reduction,exemplar selection adjustment,and other data point redistribution.The clustering is ultimately completed and a smaller number of clusters are obtained by repeatedly performing automatic detection and clustering until no mutually exclusive exemplars are detected.Some standard classification data sets are adopted for experiments on AAEAP and other clustering algorithms for comparison,and many internal and external clustering evaluation indexes are used to measure the clustering performance.The findings demonstrate that the AAEAP clustering algorithm demonstrates a substantial automatic aggregation impact while maintaining good clustering quality.展开更多
Drug target relationship(DTR)prediction is a rapidly evolving area of research in com-putational drug discovery.Despite recent advances in computational solutions that have overcome the challenges of in vitro and in v...Drug target relationship(DTR)prediction is a rapidly evolving area of research in com-putational drug discovery.Despite recent advances in computational solutions that have overcome the challenges of in vitro and in vivo experiments,most computational methods still focus on binary classification.They ignore the importance of binding affinity,which correctly distinguishes between on-targets and off-targets.In this study,we propose a deep learning model based on the microstruc-ture of compounds and proteins to predict drug-target binding affinity(DTA),which utilizes topo-logical structure information of drug molecules and sequence semantic information of proteins.In this model,graph attention network(GAT)is used to capture the deep features of the compound molecular graph,and bidirectional long short-term memory(BiLSTM)network is used to extract the protein sequence features,and the pharmacological context of DTA is obtained by combining the two.The results show that the proposed model has achieved superior performance in both cor-rectly predicting the value of interaction strength and correctly discriminating the ranking of bind-ing strength compared to the state-of-the-art baselines.A case study experiment on COVID-19 con-firms that the proposed DTA model can be used as an effective pre-screening tool in drug discovery.展开更多
The formulae for parameters of a negative electron affinity semiconductor(NEAS)with large mean escape depth of secondary electrons A(NEASLD)are deduced.The methods for obtaining parameters such asλ,B,E_(pom)and the m...The formulae for parameters of a negative electron affinity semiconductor(NEAS)with large mean escape depth of secondary electrons A(NEASLD)are deduced.The methods for obtaining parameters such asλ,B,E_(pom)and the maximumδandδat 100.0 keV≥E_(po)≥1.0 keV of a NEASLD with the deduced formulae are presented(B is the probability that an internal secondary electron escapes into the vacuum upon reaching the emission surface of the emitter,δis the secondary electron yield,E_(po)is the incident energy of primary electrons and E_(pom)is the E_(po)corresponding to the maximumδ).The parameters obtained here are analyzed,and it can be concluded that several parameters of NEASLDs obtained by the methods presented here agree with those obtained by other authors.The relation between the secondary electron emission and photoemission from a NEAS with large mean escape depth of excited electrons is investigated,and it is concluded that the presented method of obtaining A is more accurate than that of obtaining the corresponding parameter for a NEAS with largeλ_(ph)(λ_(ph)being the mean escape depth of photoelectrons),and that the presented method of calculating B at E_(po)>10.0 keV is more widely applicable for obtaining the corresponding parameters for a NEAS with largeλ_(ph).展开更多
基金supported by the National Natural Science Foundation of China(62172089,61972087,62172090).
文摘Virtual machine(VM)consolidation is an effective way to improve resource utilization and reduce energy consumption in cloud data centers.Most existing studies have considered VM consolidation as a bin-packing problem,but the current schemes commonly ignore the long-term relationship between VMs and hosts.In addition,there is a lack of long-term consideration for resource optimization in the VM consolidation,which results in unnecessary VM migration and increased energy consumption.To address these limitations,a VM consolidation method based on multi-step prediction and affinity-aware technique for energy-efficient cloud data centers(MPaAF-VMC)is proposed.The proposed method uses an improved linear regression prediction algorithm to predict the next-moment resource utilization of hosts and VMs,and obtains the stage demand of resources in the future period through multi-step prediction,which is realized by iterative prediction.Then,based on the multi-step prediction,an affinity model between the VM and host is designed using the first-order correlation coefficient and Euclidean distance.During the VM consolidation,the affinity value is used to select the migration VM and placement host.The proposed method is compared with the existing consolidation algorithms on the PlanetLab and Google cluster real workload data using the CloudSim simulation platform.Experimental results show that the proposed method can achieve significant improvement in reducing energy consumption,VM migration costs,and service level agreement(SLA)violations.
基金supported by Research Team Development Funds of L.Xue and Z.H.Ouyang,Electronic Countermeasure Institute,National University of Defense Technology。
文摘Affinity propagation(AP)is a widely used exemplar-based clustering approach with superior efficiency and clustering quality.Nevertheless,a common issue with AP clustering is the presence of excessive exemplars,which limits its ability to perform effective aggregation.This research aims to enable AP to automatically aggregate to produce fewer and more compact clusters,without changing the similarity matrix or customizing preference parameters,as done in existing enhanced approaches.An automatic aggregation enhanced affinity propagation(AAEAP)clustering algorithm is proposed,which combines a dependable partitioning clustering approach with AP to achieve this purpose.The partitioning clustering approach generates an additional set of findings with an equivalent number of clusters whenever the clustering stabilizes and the exemplars emerge.Based on these findings,mutually exclusive exemplar detection was conducted on the current AP exemplars,and a pair of unsuitable exemplars for coexistence is recommended.The recommendation is then mapped as a novel constraint,designated mutual exclusion and aggregation.To address this limitation,a modified AP clustering model is derived and the clustering is restarted,which can result in exemplar number reduction,exemplar selection adjustment,and other data point redistribution.The clustering is ultimately completed and a smaller number of clusters are obtained by repeatedly performing automatic detection and clustering until no mutually exclusive exemplars are detected.Some standard classification data sets are adopted for experiments on AAEAP and other clustering algorithms for comparison,and many internal and external clustering evaluation indexes are used to measure the clustering performance.The findings demonstrate that the AAEAP clustering algorithm demonstrates a substantial automatic aggregation impact while maintaining good clustering quality.
文摘Drug target relationship(DTR)prediction is a rapidly evolving area of research in com-putational drug discovery.Despite recent advances in computational solutions that have overcome the challenges of in vitro and in vivo experiments,most computational methods still focus on binary classification.They ignore the importance of binding affinity,which correctly distinguishes between on-targets and off-targets.In this study,we propose a deep learning model based on the microstruc-ture of compounds and proteins to predict drug-target binding affinity(DTA),which utilizes topo-logical structure information of drug molecules and sequence semantic information of proteins.In this model,graph attention network(GAT)is used to capture the deep features of the compound molecular graph,and bidirectional long short-term memory(BiLSTM)network is used to extract the protein sequence features,and the pharmacological context of DTA is obtained by combining the two.The results show that the proposed model has achieved superior performance in both cor-rectly predicting the value of interaction strength and correctly discriminating the ranking of bind-ing strength compared to the state-of-the-art baselines.A case study experiment on COVID-19 con-firms that the proposed DTA model can be used as an effective pre-screening tool in drug discovery.
基金Project supported by the National Natural Science Foundation of China(Grant No.11873013)。
文摘The formulae for parameters of a negative electron affinity semiconductor(NEAS)with large mean escape depth of secondary electrons A(NEASLD)are deduced.The methods for obtaining parameters such asλ,B,E_(pom)and the maximumδandδat 100.0 keV≥E_(po)≥1.0 keV of a NEASLD with the deduced formulae are presented(B is the probability that an internal secondary electron escapes into the vacuum upon reaching the emission surface of the emitter,δis the secondary electron yield,E_(po)is the incident energy of primary electrons and E_(pom)is the E_(po)corresponding to the maximumδ).The parameters obtained here are analyzed,and it can be concluded that several parameters of NEASLDs obtained by the methods presented here agree with those obtained by other authors.The relation between the secondary electron emission and photoemission from a NEAS with large mean escape depth of excited electrons is investigated,and it is concluded that the presented method of obtaining A is more accurate than that of obtaining the corresponding parameter for a NEAS with largeλ_(ph)(λ_(ph)being the mean escape depth of photoelectrons),and that the presented method of calculating B at E_(po)>10.0 keV is more widely applicable for obtaining the corresponding parameters for a NEAS with largeλ_(ph).
