Boolean logic devices play a key role in both traditional and nontraditional molecular logic circuits. This kind of binary logic, in which each bit is coded by （0, 1）, has only two output states--on or off （or high...Boolean logic devices play a key role in both traditional and nontraditional molecular logic circuits. This kind of binary logic, in which each bit is coded by （0, 1）, has only two output states--on or off （or high/low）. Because of the finite computing capacity and variation, it is facing challenges from multivalued logic gates while processing high-density or uncertain/imprecise information. However, a low-cost, simple, and universal system that can perform different multivalued logic computations has not yet been developed, and remains a concept for further study. Herein, taking the ternary OR and INHIBIT logic gates as model devices, we present the fabrication of a novel simple, fast, label-flee, and nanoquencher-free system for multivalued DNA logic gates using poly-thymine （T） templated copper nanoparticles （CuNPs） as signal reporters. The mixture of Cu2~ and ascorbic acid （AA） is taken as a universal platform for all ternary logic gates. Different kinds of poly-T strands and delicately designed complementary poly-adenine （A） strands are alternatively applied as ternary inputs to exhibit the ternary output states （low/0, medium/1, high/2）. Notably, there are no nanoquenchers in this platform as poly-A strands can function as not only inputs but also efficient inhibitors of poly-T templated CuNPs. Moreover, all DNA are unlabeled single-strand DNA that do not need sophisticated labeling procedures or sequence design. The above design greatly reduces the operating time, costs, and complexity. More importantly, the ternary logic computations can be completed within 20 min because of the fast formation of CuNPs, and all of them share the same threshold values.展开更多
DNA-based logic gates promote the development of molecular computing and show enormous potential in the fields of nanotechnology and biotechnology. Dumbbell oligonucleotides(DNA) with poly-thymine(poly-T) loops and a ...DNA-based logic gates promote the development of molecular computing and show enormous potential in the fields of nanotechnology and biotechnology. Dumbbell oligonucleotides(DNA) with poly-thymine(poly-T) loops and a nicked random double strand have been demonstrated to be an efficient template for the formation of fluorescent copper nanoclusters(Cu NCs) in our previous work. Herein, a new platform technology is presented with which to construct molecular logic gates by employing Cu NCs probe as a basic output generator, coupling of functional nucleases as the inputs. Two dumbbell DNAs are used with the difference in stem length(8 bp and 16 bp, respectively). The degradation of DNA templates can be tuned by various nucleic acid enzymes, single-stranded nuclease(S1), double-stranded specific nuclease(DSN), E. coli DNA ligase, exonucleases Ⅰ and Ⅲ. Briefly, S1 can digest both DNA templates, while the cleavage ability of DSN will be resistant by the short stem of SS-DNA(short-stem DNA). Exonuclease Ⅰ and Ⅲ can degrade these two nicked DNA templates, which are inhibited due to the ligation of E. coli DNA ligase. With this novel strategy, a set of logic gates is successfully constructed at the molecular level,including “YES”, “PASS 0”, “OR”, “INHIBIT”, which take the advantages of no label, easy operation, fast speed, high efficiency and low cost. Furthermore, S1 nuclease, as the biomarker of numerous carcinogens,is selectively detected in the range of 0.05–50 U/m L with the detection limit of 0.005 U/m L(1×10^(−6)U)based on this platform.展开更多
基金This work was supported by the National Natural Science Foundation of China （Nos. 21375123, 21427811 and 21675151）.
文摘Boolean logic devices play a key role in both traditional and nontraditional molecular logic circuits. This kind of binary logic, in which each bit is coded by （0, 1）, has only two output states--on or off （or high/low）. Because of the finite computing capacity and variation, it is facing challenges from multivalued logic gates while processing high-density or uncertain/imprecise information. However, a low-cost, simple, and universal system that can perform different multivalued logic computations has not yet been developed, and remains a concept for further study. Herein, taking the ternary OR and INHIBIT logic gates as model devices, we present the fabrication of a novel simple, fast, label-flee, and nanoquencher-free system for multivalued DNA logic gates using poly-thymine （T） templated copper nanoparticles （CuNPs） as signal reporters. The mixture of Cu2~ and ascorbic acid （AA） is taken as a universal platform for all ternary logic gates. Different kinds of poly-T strands and delicately designed complementary poly-adenine （A） strands are alternatively applied as ternary inputs to exhibit the ternary output states （low/0, medium/1, high/2）. Notably, there are no nanoquenchers in this platform as poly-A strands can function as not only inputs but also efficient inhibitors of poly-T templated CuNPs. Moreover, all DNA are unlabeled single-strand DNA that do not need sophisticated labeling procedures or sequence design. The above design greatly reduces the operating time, costs, and complexity. More importantly, the ternary logic computations can be completed within 20 min because of the fast formation of CuNPs, and all of them share the same threshold values.
基金the projects of Innovative research team of high-level local universities in Shanghai and a key laboratory program of the Education Commission of Shanghai Municipality (No. ZDSYS14005)Program for high-level local universities in Shanghai (No. IDF301027/022)+1 种基金Shanghai Agriculture Science and Technology Support Project (No. 21N31900500)the National Natural Science Foundation of China (No. 21505023)
文摘DNA-based logic gates promote the development of molecular computing and show enormous potential in the fields of nanotechnology and biotechnology. Dumbbell oligonucleotides(DNA) with poly-thymine(poly-T) loops and a nicked random double strand have been demonstrated to be an efficient template for the formation of fluorescent copper nanoclusters(Cu NCs) in our previous work. Herein, a new platform technology is presented with which to construct molecular logic gates by employing Cu NCs probe as a basic output generator, coupling of functional nucleases as the inputs. Two dumbbell DNAs are used with the difference in stem length(8 bp and 16 bp, respectively). The degradation of DNA templates can be tuned by various nucleic acid enzymes, single-stranded nuclease(S1), double-stranded specific nuclease(DSN), E. coli DNA ligase, exonucleases Ⅰ and Ⅲ. Briefly, S1 can digest both DNA templates, while the cleavage ability of DSN will be resistant by the short stem of SS-DNA(short-stem DNA). Exonuclease Ⅰ and Ⅲ can degrade these two nicked DNA templates, which are inhibited due to the ligation of E. coli DNA ligase. With this novel strategy, a set of logic gates is successfully constructed at the molecular level,including “YES”, “PASS 0”, “OR”, “INHIBIT”, which take the advantages of no label, easy operation, fast speed, high efficiency and low cost. Furthermore, S1 nuclease, as the biomarker of numerous carcinogens,is selectively detected in the range of 0.05–50 U/m L with the detection limit of 0.005 U/m L(1×10^(−6)U)based on this platform.
