Straw return is a promising strategy for managing soil organic carbon(SOC)and improving yield stability.However,the optimal straw return strategy for sustainable crop production in the wheat(Triticum aestivum L.)-cott...Straw return is a promising strategy for managing soil organic carbon(SOC)and improving yield stability.However,the optimal straw return strategy for sustainable crop production in the wheat(Triticum aestivum L.)-cotton(Gossypium hirsutum L.)cropping system remains uncertain.The objective of this study was to quantify the long-term(10 years)impact of carbon(C)input on SOC sequestration,soil aggregation and crop yields in a wheat-cotton cropping system in the Yangtze River Valley,China.Five treatments were arranged with a single-factor randomized design as follows:no straw return(Control),return of wheat straw only(Wt),return of cotton straw only(Ct),return of 50%wheat and 50%cotton straw(Wh-Ch)and return of 100%wheat and 100%cotton straw(Wt-Ct).In comparison to the Control,the SOC content increased by 8.4 to 20.2%under straw return.A significant linear positive correlation between SOC sequestration and C input(1.42-7.19 Mg ha^(−1)yr^(−1))(P<0.05)was detected.The percentages of aggregates of sizes>2 and 1-2 mm at the 0-20 cm soil depth were also significantly elevated under straw return,with the greatest increase of the aggregate stability in the Wt-Ct treatment(28.1%).The average wheat yields increased by 12.4-36.0%and cotton yields increased by 29.4-73.7%,and significantly linear positive correlations were also detected between C input and the yields of wheat and cotton.The average sustainable yield index(SYI)reached a maximum value of 0.69 when the C input was 7.08 Mg ha^(−1)yr^(−1),which was close to the maximum value(SYI of 0.69,C input of 7.19 Mg ha^(−1)yr^(-1))in the Wt-Ct treatment.Overall,the return of both wheat and cotton straw was the best strategy for improving SOC sequestration,soil aggregation,yields and their sustainability in the wheat-cotton rotation system.展开更多
Biogasification of coal is important for clean utilization of coal. Experiments on the fermentation of single lignite, single straw and their mixture were performed to explore the variation characteristics of gas prod...Biogasification of coal is important for clean utilization of coal. Experiments on the fermentation of single lignite, single straw and their mixture were performed to explore the variation characteristics of gas production potential, microbial community and methanogenic metabolic pathways of mixture. Research has shown that mixed fermentation of lignite and straw significantly promoted biomethane production. The abundance of hydrolytic acidifying functional bacteria genera (Sphaerochaeta, Lentimicrobium) in mixed fermentation was higher than that in the fermentation of single lignite and single straw. The abundance of some key CAZy metabolic enzyme gene sequences in mixed fermentation group was increased, which was favorable to improve methane production. Aceticlastic methanogenesis was the most critical methanogenic pathway and acetic acid pathway was more competitive in methanogenic mode during peak fermentation. Macrogenomics provided theoretical support for the claim that mixed fermentation of coal and straw promoted biomethane metabolism, which was potentially valuable in expanding methanogenesis from mixed fermentation of lignite with different biomasses.展开更多
Straw is a general term for the stem and leaf parts of mature crops,and is a multi-purpose renewable biomass energy resource in the agricultural ecosystem.The prospect of comprehensive utilization of straw has become ...Straw is a general term for the stem and leaf parts of mature crops,and is a multi-purpose renewable biomass energy resource in the agricultural ecosystem.The prospect of comprehensive utilization of straw has become broad with the development of agricultural production,the advancement of science and technology,and the improvement of the level of agricultural mechanization.The comprehensive utilization of straw plays an important role in enhancing the sustainable development ability of agricultural economy and improving the current situation of comprehensive utilization of agricultural resources in my country.This paper briefly combs the development history of straw and the prospect and current situation of comprehensive utilization,and expounds the separation technology of straw components,straw man-made panels,straw concrete,straw returning technology and oyster mushroom cultivation.It focuses on the description of the component separation technology of straw and the manufacturing process of straw-based panels.The different separation methods and separation effects of cellulose,hemicellulose and lignin were introduced in detail,and the static yield strength(MOR),internal bonding strength(IB)and water absorption thickness of several common straw-based panels were compared and studied(TS).Finally,it summarizes the benefit analysis of the comprehensive utilization of straw by scholars from the perspective of economics,and summarizes the corresponding measures based on their own views.展开更多
Fragaria vesca,commonly known as wild or woodland strawberry,is the most widely distributed diploid Fragaria species and is native to Europe and Asia.Because of its small plant size,low heterozygosity,and relative eas...Fragaria vesca,commonly known as wild or woodland strawberry,is the most widely distributed diploid Fragaria species and is native to Europe and Asia.Because of its small plant size,low heterozygosity,and relative ease of genetic transformation,F.vesca has been a model plant for fruit research since the publication of its Illumina-based genome in 2011.However,its genomic contribution to octoploid cultivated strawberry remains a long-standing question.Here,we de novo assembled and annotated a telomere-to-telomere,gap-free genome of F.vesca‘Hawaii 4’,with all seven chromosomes assembled into single contigs,providing the highest completeness and assembly quality to date.The gap-free genome is 220785082 bp in length and encodes 36173 protein-coding gene models,including 1153 newly annotated genes.All 14 telomeres and seven centromeres were annotated within the seven chromosomes.Among the three previously recognized wild diploid strawberry ancestors,F.vesca,F.iinumae,and F.viridis,phylogenomic analysis showed that F.vesca and F.viridis are the ancestors of the cultivated octoploid strawberry F.×ananassa,and F.vesca is its closest relative.Three subgenomes of F.×ananassa belong to the F.vesca group,and one is sister to F.viridis.We anticipate that this high-quality,telomere-to-telomere,gap-free F.vesca genome,combined with our phylogenomic inference of the origin of cultivated strawberry,will provide insight into the genomic evolution of Fragaria and facilitate strawberry genetics and molecular breeding.展开更多
Cultivated strawberry(Fragaria×ananassa),a perennial herb belonging to the family Rosaceae,is a complex octoploid with high heterozygosity at most loci.However,there is no research on the haplotype of the octoplo...Cultivated strawberry(Fragaria×ananassa),a perennial herb belonging to the family Rosaceae,is a complex octoploid with high heterozygosity at most loci.However,there is no research on the haplotype of the octoploid strawberry genome.Here we aimed to obtain a high-quality genome of the cultivated strawberry cultivar,“Yanli”,using single molecule real-time sequencing and high-throughput chromosome conformation capture technology.The“Yanli”genome was 823 Mb in size,with a long terminal repeat assembly index of 14.99.The genome was phased into two haplotypes,Hap1(825 Mb with contig N50 of 26.70 Mb)and Hap2(808 Mb with contig N50 of 27.51 Mb).Using the combination of Hap1 and Hap2,we obtained for the first time a haplotype-resolved genome with 56 chromosomes for the cultivated octoploid strawberry.We identified a∼10 Mb inversion and translocation on chromosome 2-1.104957 and 102356 protein-coding genes were annotated in Hap1 and Hap2,respectively.Analysis of the genes related to the anthocyanin biosynthesis pathway revealed the structural diversity and complexity in the expression of the alleles in the octoploid F.×ananassa genome.In summary,we obtained a high-quality haplotype-resolved genome assembly of F.×ananassa,which will provide the foundation for investigating gene function and evolution of the genome of cultivated octoploid strawberry.展开更多
Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be th...Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.展开更多
Salt stress can be alleviated by straw layer burial in the soil, but little is known of the appropriate form of the straw layer for optimal regulation of soil water and salinity because of the uncontrollability of fie...Salt stress can be alleviated by straw layer burial in the soil, but little is known of the appropriate form of the straw layer for optimal regulation of soil water and salinity because of the uncontrollability of field tests. Here, the following four straw forms with compaction thickness of 5 cm buried 40–45 deep were studied: no straw layer(CK), segmented straw(SL, 5 cm in length), straw pellet(SK), and straw powder(SF). The three straw forms(SL, SK and SF) significantly delayed the infiltration of irrigation water down the column profile by 71.20–134.3 h relative to CK and the migration velocity of the wetting front under SF was the slowest. It took longer for the wetting front to transcend SK than SL but shorter for it to reach the bottom of soil column after water crossed the straw layer. Compared with CK, the average volumetric water content in the 0–40 cm soil layer increased by 6.45% under SL, 1.77% under SK and 5.39% under SF. The desalination rates at the 0–40 and 0–100 cm soil layers increased by 5.85 and 3.76% under SL, 6.64 and 1.47% under SK and 5.97 and 4.82% under SF. However, there was no significant difference among straw forms in the 0–40 cm soil layer. Furthermore, the salt leaching efficiency(SLE, g mm^–1 h^–1) above the 40 cm layer under SL was 0.0097, being significantly higher than that under SF(0.0071) by 37.23%. Salt storage under SL, SK and SF in the 40–45 cm layer accounted for 4.50, 16.92 and 7.43% of total storage in the 1-m column profile. Cumulative evaporation under SL and SF decreased significantly by 41.20 and 49.00%, with both treatments having the most significant inhibition of salt accumulation(resalinization rate being 36.06 and 47.15% lower than CK) in the 0–40 cm soil layer. In conclusion, the different forms of straw layers have desalting effects under high irrigation level(446 mm). In particular, SL and SF performed better than SK in promoting deep salt leaching and inhibiting salt accumulation on the soil surface. However, SL was simpler to implement and its SLE was higher. Therefore, the segmented 5 cm straw can be recommended as an optimum physical form for establishing a straw layer for managing saline soils for crop production.展开更多
With the development circular economy, the use of agricultural waste to prepare biomass materials to remove pollutants has become a research hotspot. In this study, sunflower straw activated carbon (SSAC) was prepared...With the development circular economy, the use of agricultural waste to prepare biomass materials to remove pollutants has become a research hotspot. In this study, sunflower straw activated carbon (SSAC) was prepared by the one-step activation method, with sunflower straw (SS) used as the raw material and H3PO4 used as the activator. Four types of SSAC were prepared with impregnation ratios (weight of SS to weight of H3PO4) of 1:1, 1:2, 1:3, and 1:5, corresponding to SSAC1, SSAC2, SSAC3, and SSAC4, respectively. The adsorption process of acid fuchsin (AF) in water using the four types of SSAC was studied. The results showed that the impregnation ratio significantly affected the structure of the materials. The increase in the impregnation ratio increased the specific surface area and pore volume of SSAC and improved the adsorption capacity of AF. However, an impregnation ratio that was too large led to a decrease in specific surface area. SSAC3, with an impregnation ratio of 1:3, had the largest specific surface area (1 794.01 m2/g), and SSAC4, with an impregnation ratio of 1:5, exhibited the smallest microporosity (0.052 7 cm3/g) and the largest pore volume (2.549 cm3/g). The adsorption kinetics of AF using the four types of SSAC agreed with the quasi-second-order adsorption kinetic model. The Langmuir isotherm model was suitable to describe SSAC3 and SSAC4, and the Freundlich isotherm model was appropriate to describe SSAC1 and SSAC2. The result of thermodynamics showed that the adsorption process was spontaneous and endothermic. At 303 K, SSAC4 showed a removal rate of 97.73% for 200-mg/L AF with a maximum adsorption capacity of 2 763.36 mg/g, the highest among the four types of SSAC. This study showed that SAAC prepared by the H3PO4-based one-step activation method is a green and efficient carbon material and has significant application potential for the treatment of dye-containing wastewater.展开更多
Strawberry(Fragaria×ananassa)fruits are an excellent source of L-ascorbic acid(AsA),a powerful antioxidant for plants and humans.Identifying the genetic components underlying AsA accumulation is crucial for enhan...Strawberry(Fragaria×ananassa)fruits are an excellent source of L-ascorbic acid(AsA),a powerful antioxidant for plants and humans.Identifying the genetic components underlying AsA accumulation is crucial for enhancing strawberry nutritional quality.Here,we unravel the genetic architecture of AsA accumulation using an F1 population derived from parental lines‘Candonga’and‘Senga Sengana’,adapted to distinct Southern and Northern European areas.To account for environmental effects,the F1 and parental lines were grown and phenotyped in five locations across Europe(France,Germany,Italy,Poland and Spain).Fruit AsA content displayed normal distribution typical of quantitative traits and ranged five-fold,with significant differences among genotypes and environments.AsA content in each country and the average in all of them was used in combination with 6,974 markers for quantitative trait locus(QTL)analysis.Environmentally stable QTLs for AsA content were detected in linkage group(LG)3A,LG 5A,LG 5B,LG 6B and LG 7C.Candidate genes were identified within stable QTL intervals and expression analysis in lines with contrasting AsA content suggested that GDP-L-Galactose Phosphorylase FaGGP(3A),and the chloroplast-located AsA transporter gene FaPHT4;4(7C)might be the underlying genetic factors for QTLs on LG 3A and 7C,respectively.We show that recessive alleles of FaGGP(3A)inherited from both parental lines increase fruit AsA content.Furthermore,expression of FaGGP(3A)was two-fold higher in lines with high AsA.Markers here identified represent a useful resource for efficient selection of new strawberry cultivars with increased AsA content.展开更多
The co-utilization of green manure (GM) and rice straw (RS) in paddy fields has been widely applied as an effective practice in southern China.However,its effects on soil aggregate and soil organic carbon (SOC) stabil...The co-utilization of green manure (GM) and rice straw (RS) in paddy fields has been widely applied as an effective practice in southern China.However,its effects on soil aggregate and soil organic carbon (SOC) stability remain unclear.In the present study,the effect of GM,RS,and co-utilization of GM and RS on particle size distribution of soil aggregates and SOC density fractions were measured in a field experiment.The experiment included six treatments,i.e.,winter fallow (WF) without RS return (Ctrl),WF with 50%RS return (1/2RS),WF with 100%RS return (RS),GM without RS return (GM),GM with 50%RS return (GM1/2RS) and GM with 100%RS return (GMRS).The results showed that the proportion of small macro-aggregates (0.25–2 mm) and the mean weight diameter (MWD) of aggregates in the GMRS treatment was greater (by 18.9 and 3.41%,respectively) than in the RS treatment,while the proportion of silt+clay particles (<0.053 mm) was lower (by 14.4%).The concentration of SOC in microaggregates (0.053–0.25 mm)and silt+clay particles was higher in the GMRS treatment than in GM and RS treatments individually.The concentration and proportion of free light organic carbon (fLOC) in aggregates of various particle sizes and bulk soil was greater in the GMRS treatment than the RS treatment,whereas the concentration and proportion of mineral-associated organic carbon in small macroaggregates,microaggregates,and bulk was lower in the GMRS treatment than in the RS treatment.The proportion of intra-aggregate particulate organic carbon (iPOC) was greater in the GMRS treatment than in GM treatment.The GMRS treatment had strong positive effects on iPOC in small macroaggregates,suggesting that SOC was transferred from fLOC to iPOC.In conclusion,co-utilizing green manure and rice straw cultivated the SOC pool by increasing the concentration of fLOC and improved soil carbon stability by promoting the sequestration of organic carbon in iPOC as a form of physical protection.展开更多
Straw returning to the field is a technical measure of crop production widely adopted in arid areas. It is unknown whether crop yield can be further increased by improving the eco-physiological characteristics when st...Straw returning to the field is a technical measure of crop production widely adopted in arid areas. It is unknown whether crop yield can be further increased by improving the eco-physiological characteristics when straw returning is applied in the crop production system. So, a three-year field experiment was conducted with various straw returning treatments for wheat production:(i) no-tillage with straw mulching(NTSM),(ii) no-tillage with straw standing(NTSS),(iii) conventional tillage with straw incorporation(CTS), and(iv) conventional tillage with no straw returning(CT, control). The eco-physiological and yield formation indicators were investigated to provide the basis for selecting the appropriate straw returning method to increase wheat yield and clarifying its regulation mechanism on eco-physiology. The results showed that NTSM and NTSS treatments had better regulation of eco-physiological characteristics and had a higher yield increase than CTS and CT. Meanwhile, NTSM had a relatively higher yield than NTSS through better regulation of eco-physiological characteristics. Compared to CT, the leaf area index of NTSM was decreased by 6.1–7.6% before the Feekes 10.0 stage of wheat, but that of NTSM was increased by 38.9–45.1% after the Feekes 10.0 stage. NTSM effectively regulated the dynamics of the photosynthetic source of green leaves during the wheat growth period. NTSM improved net photosynthetic rate by 10.2–21.4% and 11.0–21.6%, raised transpiration rate by 4.4–10.0% and 5.3–6.1%, increased leaf water use efficiency by 5.6–10.4% and 5.4–14.6%, at Feekes 11.0 and 11.2 stages of wheat, compared to CT, respectively. NTSM had higher leaf water potential(LWP) by 7.5–12.0% and soil water potential(SWP) by 8.9–24.0% from Feekes 10.3 to 11.2 stages of wheat than CT. Meanwhile, the absolute value of difference on LWP and SWP with NTSM was less than that with CT, indicating that NTSM was conducive to holding the stability of water demand for wheat plants and water supply of soil at arid conditions. Thus, NTSM had a greater grain yield of wheat by 18.6–27.3% than CT, and the high yield was attributed to the synchronous increase and cooperative development of ear number, grain number per ear, and 1 000-grain weight. NTSM had a positive effect on regulating the eco-physiological characteristics and can be recommended to enhance wheat grain yield in arid conditions.展开更多
Straw is widely incorporated into soil worldwide,but most studies have concentrated on the effects of straw mulching or incorporation with topsoil.To determine the effect of depth of straw incorporation on bacterial a...Straw is widely incorporated into soil worldwide,but most studies have concentrated on the effects of straw mulching or incorporation with topsoil.To determine the effect of depth of straw incorporation on bacterial and fungal communities,we established a field experiment in a region in Northeast China with Haplic Chernozems using four treatments:conventional tillage(CT,tillage to a depth of 15 cm with no straw incorporation),straw incorporation with conventional tillage(SCT,tillage to a depth of 15 cm),inversion tillage(IT,tillage to a depth of 35 cm)and straw incorporation with inversion tillage(SIT,tillage to a depth of 35 cm).The soils were managed by inversion to a depth of 15 or 35 cm after harvest.The results show that soil organic carbon content was significantly higher and pH and bulk density were significantly lower in the 15–35 cm layer in IT and SIT than CT and SCT.Fungal abundance was higher with straw incorporation,but fungal diversity was lower in the 0–15 cm layer in SCT and SIT than in CT and IT.Path length in the bacterial network was shorter and connectivity was higher in CT+SCT than in IT+SIT,leading to a more complex ecosystem,and the fungal network had opposite patterns.The key taxa in the phylum Actinobacteriota and Ascomycota in the microbial networks changed dramatically at the genus level following inversion tillage with straw amendment,which may increase bacterial network resistance to environmental disturbances and unstable fungal networks,resulting in large changes in the fungal community involved in the decomposition of recalcitrant straw-derived C and the more efficient acquisition of limiting resources.展开更多
Soil salinization is a critical environmental issue restricting agricultural production.Deep return of straw to the soil as an interlayer (at 40 cm depth) has been a popular practice to alleviate salt stress.However,t...Soil salinization is a critical environmental issue restricting agricultural production.Deep return of straw to the soil as an interlayer (at 40 cm depth) has been a popular practice to alleviate salt stress.However,the legacy effects of straw added as an interlayer at different rates on soil organic carbon (SOC) and total nitrogen (TN) in saline soils still remain inconclusive.Therefore,a four-year (2015–2018) field experiment was conducted with four levels (i.e.,0,6,12and 18 Mg ha~(–1)) of straw returned as an interlayer.Compared with no straw interlayer (CK),straw addition increased SOC concentration by 14–32 and 11–57%in the 20–40 and 40–60 cm soil layers,respectively.The increases in soil TN concentration (8–22 and 6–34%in the 20–40 and 40–60 cm soil layers,respectively) were lower than that for SOC concentration,which led to increased soil C:N ratio in the 20–60 cm soil depth.Increases in SOC and TN concentrations in the 20–60 cm soil layer with straw addition led to a decrease in stratification ratios (0–20 cm:20–60 cm),which promoted uniform distributions of SOC and TN in the soil profile.Increases in SOC and TN concentrations were associated with soil salinity and moisture regulation and improved sunflower yield.Generally,compared with other treatments,the application of 12 Mg ha~(–1) straw had higher SOC,TN and C:N ratio,and lower soil stratification ratio in the2015–2017 period.The results highlighted that legacy effects of straw application as an interlayer were maintained for at least four years,and demonstrated that deep soil straw application had a great potential for improving subsoil fertility in salt-affected soils.展开更多
Recently,increasing evidence suggests that DNA methylation plays a crucial role in fruit ripening.However,the role of DNA methylation in regulating specific traits,such as flavor,remains unclear.Here,we report a role ...Recently,increasing evidence suggests that DNA methylation plays a crucial role in fruit ripening.However,the role of DNA methylation in regulating specific traits,such as flavor,remains unclear.Here,we report a role of DNA methylation in affecting furanone biosynthesis in strawberry.Strawberry quinone oxidoreductase(FaQR)is a key enzyme in furanone biosynthesis.There are four FaQR homologs in strawberry cultivar‘Yuexin’,and one of them,FaQR3,contributes∼50%of FaQR transcripts,indicating a major role of FaQR3 in furanone biosynthesis.Through characterization of levels of DNA methylation and FaQR3 transcript and furanone contents during fruit ripening and after the application of DNA methylation inhibitor,we found that the DNA methylation level of the FaQR3 promoter was negatively correlated with FaQR3 expression and furanone accumulation,suggesting that DNA methylation may be involved in furanone biosynthesis through adjusting FaQR3 expression,and responded to different temperatures consistently.In addition,transient expression of a gene in the RNA-directed DNA methylation(RdDM)pathway,FaAGO4,and enrichment analysis of the 24-nucleotide siRNAs suggested that DNA methylation in the FaQR3 promoter is mediated by the RdDM pathway.Transient RNA interference(RNAi)of FaDML indicated that the demethylation pathway may be involved in regulating furanone accumulation.These findings provide new insights into the role of DNA methylation and demethylation in affecting flavor quality in strawberry during fruit ripening.展开更多
The WRKY transcription factors play important roles in plant growth and resistance,but only a few members have been identified in strawberry.Here we identified a WRKY transcription factor,FvWRKY50,in diploid strawberr...The WRKY transcription factors play important roles in plant growth and resistance,but only a few members have been identified in strawberry.Here we identified a WRKY transcription factor,FvWRKY50,in diploid strawberry which played essential roles in strawberry vegetative growth,and reproductive growth.Knocking out FvWRKY50 by genome editing accelerated flowering time and leaf senescence but delayed anthocyanin accumulation in fruit.Further analysis showed that FvWRKY50 acted as a transcriptional repressor to negatively regulate the expression of flowering-and leaf senescence-related genes,including FvFT2,FvCO,FvFT3,and FvSAUR36.Notably,FvWRKY50 directly upregulated the expression of FvCHI and FvDFR by binding their promoter under normal conditions,but at low temperature FvWRKY50 was phosphorylated by FvMAPK3 and then induced protein degradation by ubiquitination,delaying anthocyanin accumulation.In addition,the homozygous mutant of FvWRKY50 was smaller while the biallelic mutant showed normal size.These new findings provide important clues for us to further reveal the regulatory mechanisms of strawberry growth and fruit ripening.展开更多
Necrotrophic pathogens replicate massively upon colonizing plants,causing large-scale wilting and death of plant tissues.Under-standing both mechanisms of pathogen invasion and host response processes prior to symptom...Necrotrophic pathogens replicate massively upon colonizing plants,causing large-scale wilting and death of plant tissues.Under-standing both mechanisms of pathogen invasion and host response processes prior to symptom appearance and their key regulatory networks is therefore important for defense against pathogen attack.Here,we investigated the mechanisms of interaction between woodland strawberry(Fragaria vesca)leaves and gray mold pathogen(Botrytis cinerea)at 14 infection time points during the first 12 hours of the infection period using a dense,high-resolution time series dual transcriptomic analysis,characterizing the arms race between strawberry F.vesca and B.cinerea before the appearance of localized lesions.Strawberry leaves rapidly initiated strong systemic defenses at the first sign of external stimulation and showed lower levels of transcriptomic change later in the infection process.Unlike the host plants,B.cinerea showed larger-scale transcriptomic changes that persisted throughout the infection process.Weighted gene co-expression network analysis identified highly correlated genes in 32 gene expression modules between B.cinerea and strawberry.Yeast two-hybrid and bimolecular fluorescence complementation assays revealed that the disease response protein FvRLP2 from woodland strawberry interacted with the cell death inducing proteins BcXYG1 and BcPG3 from B.cinerea.Overexpression of FvRLP2 in both strawberry and Arabidopsis inhibited B.cinerea infection,confirming these genes’respective functions.These findings shed light on the arms race process by which B.cinerea invades host plants and strawberry to defend against pathogen infection.展开更多
Light is an important environmental signal that influences plant growth and development.Among the photoreceptors,phytochromes can sense red/far-red light to coordinate various biological processes.However,their functi...Light is an important environmental signal that influences plant growth and development.Among the photoreceptors,phytochromes can sense red/far-red light to coordinate various biological processes.However,their functions in strawberry are not yet known.In this study,we identified an EMS mutant,named P8,in woodland strawberry(Fragaria vesca)that showed greatly increased plant height and reduced anthocyanin content.Mapping-by-sequencing revealed that the causal mutation in FvePhyB leads to premature termination of translation.The light treatment assay revealed that FvePhyB is a bona fide red/far-red light photoreceptor,as it specifically inhibits hypocotyl length under red light.Transcriptome analysis showed that the FvePhyB mutation affects the expression levels of genes involved in hormone synthesis and signaling and anthocyanin biosynthesis in petioles and fruits.The srl mutant with a longer internode is caused by a mutation in the DELLA gene FveRGA1(Repressor of GA1)in the gibberellin pathway.We found that the P8 srl double mutant has much longer internodes than srl,suggesting a synergistic role of FvePhyB and FveRGA1 in this process.Taken together,these results demonstrate the important role of FvePhyB in regulating plant architecture and anthocyanin content in woodland strawberry.展开更多
Rosaceae is a large plant family consisting of many economically important fruit crops including peach,apple,pear,strawberry,raspberry,plum,and others.Investigations into their growth and development will promote both...Rosaceae is a large plant family consisting of many economically important fruit crops including peach,apple,pear,strawberry,raspberry,plum,and others.Investigations into their growth and development will promote both basic understanding and progress toward increasing fruit yield and quality.With the ever-increasing high-throughput sequencing data of Rosaceae,comparative studies are hindered by inconsistency of sample collection with regard to tissue,stage,growth conditions,and by vastly different handling of the data.Therefore,databases that enable easy access and effective utilization of directly comparable transcript data are highly desirable.Here,we describe a database for comparative analysis,ROsaceae Fruit Transcriptome database(ROFT),based on RNA-seq data generated from the same laboratory using similarly dissected and staged fruit tissues of four important Rosaceae fruit crops:apple,peach,strawberry,and red raspberry.Hence,the database is unique in allowing easy and robust comparisons among fruit gene expression across the four species.ROFT enables researchers to query orthologous genes and their expression patterns during different fruit developmental stages in the four species,identify tissue-specific and tissue-/stage-specific genes,visualize and compare ortholog expression in different fruit types,explore consensus co-expression networks,and download different data types.The database provides users access to vast amounts of RNA-seq data across the four economically important fruits,enables investigations of fruit type specification and evolution,and facilitates the selection of genes with critical roles in fruit development for further studies.展开更多
Leaves and f lowers are crucial for the growth and development of higher plants.In this study we identified a mutant with narrow leaf lets and early f lowering(nlef)in an ethyl methanesulfonate-mutagenized population ...Leaves and f lowers are crucial for the growth and development of higher plants.In this study we identified a mutant with narrow leaf lets and early f lowering(nlef)in an ethyl methanesulfonate-mutagenized population of woodland strawberry(Fragaria vesca)and aimed to identify the candidate gene.Genetic analysis revealed that a single recessive gene,nlef,controlled the mutant phenotype.We found that FvH4_1g25470,which encodes a putative DNA polymeraseαwith a polymerase and histidinol phosphatase domain(PHP),might be the candidate gene,using bulked segregant analysis with whole-genome sequencing,molecular markers,and cloning analyses.A splice donor site mutation(C to T)at the 5-end of the second intron led to an erroneous splice event that reduced the expression level of the full-length transcript of FvePHP in mutant plants.FvePHP was localized in the nucleus and was highly expressed in leaves.Silencing of FvePHP using the virus-induced gene silencing method resulted in partial developmental defects in strawberry leaves.Overexpression of the FvePHP gene can largely restore the mutant phenotype.The expression levels of FveSEP1,FveSEP3,FveAP1,FveFUL,and FveFT were higher in the mutants than those in‘Yellow Wonder’plants,probably contributing to the early f lowering phenotype in mutant plants.Our results indicate that mutation in FvePHP is associated with multiple developmental pathways.These results aid in understanding the role of DNA polymerase in strawberry development.展开更多
Firmness is one of the most important fruit quality traits in strawberries.The postharvest shelf life of this soft fruit is highly limited by the loss of firmness,where cell wall disassembly plays an important role.Pr...Firmness is one of the most important fruit quality traits in strawberries.The postharvest shelf life of this soft fruit is highly limited by the loss of firmness,where cell wall disassembly plays an important role.Previous studies demonstrated that the polygalacturonase FaPG1 has a key role in remodelling pectins during strawberry softening.In this study,FaPG1 knockout strawberry plants have been generated using the CRISPR/Cas9 system delivered via Agrobacterium tumefaciens.Ten independent lines,cv.“Chandler”,were obtained,and all of them were successfully edited as determined by PCR amplification and T7 endonuclease assay.The targeted mutagenesis insertion and deletion rates were analyzed using targeted deep sequencing.The percentage of edited sequences varied from 47%up to almost 100%,being higher than 95%for seven of the selected lines.Phenotypic analyses showed that 7 out of the eight lines analyzed produced fruits significantly firmer than the control,ranging from 33 to 70%increase in firmness.There was a positive relationship between the degree of FaPG1 editing and the rise in fruit firmness.Minor changes were observed in other fruit quality traits,such as colour,soluble solids,titratable acidity or anthocyanin content.Edited fruits showed a reduced softening rate during postharvest,displayed a reduced transpirational water loss,and were less damaged by Botrytis cinerea inoculation.The analysis of four potential off-target sites revealed no mutation events.In conclusion,editing the FaPG1 gene using the CRISPR/Cas9 system is an efficient method for improving strawberry fruit firmness and shelf life.展开更多
基金supported by the National Natural Science Foundation of China(32071968)the Jiangsu Agricultural Science and Technology Innovation Fund,China(CX(22)2015))the Jiangsu Collaborative Innovation Center for Modern Crop Production,China。
文摘Straw return is a promising strategy for managing soil organic carbon(SOC)and improving yield stability.However,the optimal straw return strategy for sustainable crop production in the wheat(Triticum aestivum L.)-cotton(Gossypium hirsutum L.)cropping system remains uncertain.The objective of this study was to quantify the long-term(10 years)impact of carbon(C)input on SOC sequestration,soil aggregation and crop yields in a wheat-cotton cropping system in the Yangtze River Valley,China.Five treatments were arranged with a single-factor randomized design as follows:no straw return(Control),return of wheat straw only(Wt),return of cotton straw only(Ct),return of 50%wheat and 50%cotton straw(Wh-Ch)and return of 100%wheat and 100%cotton straw(Wt-Ct).In comparison to the Control,the SOC content increased by 8.4 to 20.2%under straw return.A significant linear positive correlation between SOC sequestration and C input(1.42-7.19 Mg ha^(−1)yr^(−1))(P<0.05)was detected.The percentages of aggregates of sizes>2 and 1-2 mm at the 0-20 cm soil depth were also significantly elevated under straw return,with the greatest increase of the aggregate stability in the Wt-Ct treatment(28.1%).The average wheat yields increased by 12.4-36.0%and cotton yields increased by 29.4-73.7%,and significantly linear positive correlations were also detected between C input and the yields of wheat and cotton.The average sustainable yield index(SYI)reached a maximum value of 0.69 when the C input was 7.08 Mg ha^(−1)yr^(−1),which was close to the maximum value(SYI of 0.69,C input of 7.19 Mg ha^(−1)yr^(-1))in the Wt-Ct treatment.Overall,the return of both wheat and cotton straw was the best strategy for improving SOC sequestration,soil aggregation,yields and their sustainability in the wheat-cotton rotation system.
文摘Biogasification of coal is important for clean utilization of coal. Experiments on the fermentation of single lignite, single straw and their mixture were performed to explore the variation characteristics of gas production potential, microbial community and methanogenic metabolic pathways of mixture. Research has shown that mixed fermentation of lignite and straw significantly promoted biomethane production. The abundance of hydrolytic acidifying functional bacteria genera (Sphaerochaeta, Lentimicrobium) in mixed fermentation was higher than that in the fermentation of single lignite and single straw. The abundance of some key CAZy metabolic enzyme gene sequences in mixed fermentation group was increased, which was favorable to improve methane production. Aceticlastic methanogenesis was the most critical methanogenic pathway and acetic acid pathway was more competitive in methanogenic mode during peak fermentation. Macrogenomics provided theoretical support for the claim that mixed fermentation of coal and straw promoted biomethane metabolism, which was potentially valuable in expanding methanogenesis from mixed fermentation of lignite with different biomasses.
基金supported by the National Natural Science Foundation of China(Nos.51878354&51308301)the Natural Science Foundation of Jiangsu Province(Nos.BK20181402&BK20130978)Qinglan Project of Jiangsu Higher Education Institutions.
文摘Straw is a general term for the stem and leaf parts of mature crops,and is a multi-purpose renewable biomass energy resource in the agricultural ecosystem.The prospect of comprehensive utilization of straw has become broad with the development of agricultural production,the advancement of science and technology,and the improvement of the level of agricultural mechanization.The comprehensive utilization of straw plays an important role in enhancing the sustainable development ability of agricultural economy and improving the current situation of comprehensive utilization of agricultural resources in my country.This paper briefly combs the development history of straw and the prospect and current situation of comprehensive utilization,and expounds the separation technology of straw components,straw man-made panels,straw concrete,straw returning technology and oyster mushroom cultivation.It focuses on the description of the component separation technology of straw and the manufacturing process of straw-based panels.The different separation methods and separation effects of cellulose,hemicellulose and lignin were introduced in detail,and the static yield strength(MOR),internal bonding strength(IB)and water absorption thickness of several common straw-based panels were compared and studied(TS).Finally,it summarizes the benefit analysis of the comprehensive utilization of straw by scholars from the perspective of economics,and summarizes the corresponding measures based on their own views.
基金funding from the National Natural Science Foundation of China(32172614)a startup fund fromHainan University and a Hainan Province Science and Technology Special Fund(ZDYF2023XDNY050).
文摘Fragaria vesca,commonly known as wild or woodland strawberry,is the most widely distributed diploid Fragaria species and is native to Europe and Asia.Because of its small plant size,low heterozygosity,and relative ease of genetic transformation,F.vesca has been a model plant for fruit research since the publication of its Illumina-based genome in 2011.However,its genomic contribution to octoploid cultivated strawberry remains a long-standing question.Here,we de novo assembled and annotated a telomere-to-telomere,gap-free genome of F.vesca‘Hawaii 4’,with all seven chromosomes assembled into single contigs,providing the highest completeness and assembly quality to date.The gap-free genome is 220785082 bp in length and encodes 36173 protein-coding gene models,including 1153 newly annotated genes.All 14 telomeres and seven centromeres were annotated within the seven chromosomes.Among the three previously recognized wild diploid strawberry ancestors,F.vesca,F.iinumae,and F.viridis,phylogenomic analysis showed that F.vesca and F.viridis are the ancestors of the cultivated octoploid strawberry F.×ananassa,and F.vesca is its closest relative.Three subgenomes of F.×ananassa belong to the F.vesca group,and one is sister to F.viridis.We anticipate that this high-quality,telomere-to-telomere,gap-free F.vesca genome,combined with our phylogenomic inference of the origin of cultivated strawberry,will provide insight into the genomic evolution of Fragaria and facilitate strawberry genetics and molecular breeding.
基金This work was financially supported by National Natural Science Foundation of China(No.32130092,No.31872072)LiaoNing Revitalization Talents Pro-gram(No.XLYC1902069).
文摘Cultivated strawberry(Fragaria×ananassa),a perennial herb belonging to the family Rosaceae,is a complex octoploid with high heterozygosity at most loci.However,there is no research on the haplotype of the octoploid strawberry genome.Here we aimed to obtain a high-quality genome of the cultivated strawberry cultivar,“Yanli”,using single molecule real-time sequencing and high-throughput chromosome conformation capture technology.The“Yanli”genome was 823 Mb in size,with a long terminal repeat assembly index of 14.99.The genome was phased into two haplotypes,Hap1(825 Mb with contig N50 of 26.70 Mb)and Hap2(808 Mb with contig N50 of 27.51 Mb).Using the combination of Hap1 and Hap2,we obtained for the first time a haplotype-resolved genome with 56 chromosomes for the cultivated octoploid strawberry.We identified a∼10 Mb inversion and translocation on chromosome 2-1.104957 and 102356 protein-coding genes were annotated in Hap1 and Hap2,respectively.Analysis of the genes related to the anthocyanin biosynthesis pathway revealed the structural diversity and complexity in the expression of the alleles in the octoploid F.×ananassa genome.In summary,we obtained a high-quality haplotype-resolved genome assembly of F.×ananassa,which will provide the foundation for investigating gene function and evolution of the genome of cultivated octoploid strawberry.
基金funded by the National Key Research and Development Program of China (2022YFD1500100)the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA28070100)+1 种基金the National Natural Science Foundation of China (41807085)the earmarked fund for China Agriculture Research System (CARS04)。
文摘Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process,but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage(CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage(SCT, tillage to a depth of 15 cm),inversion tillage(IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage(SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil.In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.
基金funded by the National Natural Science Foundation of China (31471455 and 31871584)the National Key Research and Development Program of China (2016YFC0501302)
文摘Salt stress can be alleviated by straw layer burial in the soil, but little is known of the appropriate form of the straw layer for optimal regulation of soil water and salinity because of the uncontrollability of field tests. Here, the following four straw forms with compaction thickness of 5 cm buried 40–45 deep were studied: no straw layer(CK), segmented straw(SL, 5 cm in length), straw pellet(SK), and straw powder(SF). The three straw forms(SL, SK and SF) significantly delayed the infiltration of irrigation water down the column profile by 71.20–134.3 h relative to CK and the migration velocity of the wetting front under SF was the slowest. It took longer for the wetting front to transcend SK than SL but shorter for it to reach the bottom of soil column after water crossed the straw layer. Compared with CK, the average volumetric water content in the 0–40 cm soil layer increased by 6.45% under SL, 1.77% under SK and 5.39% under SF. The desalination rates at the 0–40 and 0–100 cm soil layers increased by 5.85 and 3.76% under SL, 6.64 and 1.47% under SK and 5.97 and 4.82% under SF. However, there was no significant difference among straw forms in the 0–40 cm soil layer. Furthermore, the salt leaching efficiency(SLE, g mm^–1 h^–1) above the 40 cm layer under SL was 0.0097, being significantly higher than that under SF(0.0071) by 37.23%. Salt storage under SL, SK and SF in the 40–45 cm layer accounted for 4.50, 16.92 and 7.43% of total storage in the 1-m column profile. Cumulative evaporation under SL and SF decreased significantly by 41.20 and 49.00%, with both treatments having the most significant inhibition of salt accumulation(resalinization rate being 36.06 and 47.15% lower than CK) in the 0–40 cm soil layer. In conclusion, the different forms of straw layers have desalting effects under high irrigation level(446 mm). In particular, SL and SF performed better than SK in promoting deep salt leaching and inhibiting salt accumulation on the soil surface. However, SL was simpler to implement and its SLE was higher. Therefore, the segmented 5 cm straw can be recommended as an optimum physical form for establishing a straw layer for managing saline soils for crop production.
基金supported by the National Natural Science Foundation of China(Grant No.41865010)the 2020 Leading Talents of Young Science and Technology Talents in Colleges and Universities of the Inner Mongolia Autonomous Region(Grant No.NJYT-20-A04)the Project of the 10th Group of Grassland Talents of the Inner Mongolia Autonomous Region,the 2022 Inner Mongolia Outstanding Youth Fund Project,and the Key Research and Development and Achievement Transformation Program of the Inner Mongolia Autonomous Region in 2022(Grant No.2022YFHH0035).
文摘With the development circular economy, the use of agricultural waste to prepare biomass materials to remove pollutants has become a research hotspot. In this study, sunflower straw activated carbon (SSAC) was prepared by the one-step activation method, with sunflower straw (SS) used as the raw material and H3PO4 used as the activator. Four types of SSAC were prepared with impregnation ratios (weight of SS to weight of H3PO4) of 1:1, 1:2, 1:3, and 1:5, corresponding to SSAC1, SSAC2, SSAC3, and SSAC4, respectively. The adsorption process of acid fuchsin (AF) in water using the four types of SSAC was studied. The results showed that the impregnation ratio significantly affected the structure of the materials. The increase in the impregnation ratio increased the specific surface area and pore volume of SSAC and improved the adsorption capacity of AF. However, an impregnation ratio that was too large led to a decrease in specific surface area. SSAC3, with an impregnation ratio of 1:3, had the largest specific surface area (1 794.01 m2/g), and SSAC4, with an impregnation ratio of 1:5, exhibited the smallest microporosity (0.052 7 cm3/g) and the largest pore volume (2.549 cm3/g). The adsorption kinetics of AF using the four types of SSAC agreed with the quasi-second-order adsorption kinetic model. The Langmuir isotherm model was suitable to describe SSAC3 and SSAC4, and the Freundlich isotherm model was appropriate to describe SSAC1 and SSAC2. The result of thermodynamics showed that the adsorption process was spontaneous and endothermic. At 303 K, SSAC4 showed a removal rate of 97.73% for 200-mg/L AF with a maximum adsorption capacity of 2 763.36 mg/g, the highest among the four types of SSAC. This study showed that SAAC prepared by the H3PO4-based one-step activation method is a green and efficient carbon material and has significant application potential for the treatment of dye-containing wastewater.
基金supported by the European Union’s Horizon 2020 research and innovation program(GoodBerrygrant agreement number 679303)Agencia Estatal de Investigación(PID2019-111496RR-I00/AEI/10.13039/501100011033)and PR.AVA.AVA2019.034(IFAPA,FEDER funds)。
文摘Strawberry(Fragaria×ananassa)fruits are an excellent source of L-ascorbic acid(AsA),a powerful antioxidant for plants and humans.Identifying the genetic components underlying AsA accumulation is crucial for enhancing strawberry nutritional quality.Here,we unravel the genetic architecture of AsA accumulation using an F1 population derived from parental lines‘Candonga’and‘Senga Sengana’,adapted to distinct Southern and Northern European areas.To account for environmental effects,the F1 and parental lines were grown and phenotyped in five locations across Europe(France,Germany,Italy,Poland and Spain).Fruit AsA content displayed normal distribution typical of quantitative traits and ranged five-fold,with significant differences among genotypes and environments.AsA content in each country and the average in all of them was used in combination with 6,974 markers for quantitative trait locus(QTL)analysis.Environmentally stable QTLs for AsA content were detected in linkage group(LG)3A,LG 5A,LG 5B,LG 6B and LG 7C.Candidate genes were identified within stable QTL intervals and expression analysis in lines with contrasting AsA content suggested that GDP-L-Galactose Phosphorylase FaGGP(3A),and the chloroplast-located AsA transporter gene FaPHT4;4(7C)might be the underlying genetic factors for QTLs on LG 3A and 7C,respectively.We show that recessive alleles of FaGGP(3A)inherited from both parental lines increase fruit AsA content.Furthermore,expression of FaGGP(3A)was two-fold higher in lines with high AsA.Markers here identified represent a useful resource for efficient selection of new strawberry cultivars with increased AsA content.
基金funded by the National Key Research and Development Program of China (2021YFD1700200)the earmarked fund for China Agriculture Reserch System(CARS-22)the Natural Science Foundation of Jiangsu Province,China (BK20200112)。
文摘The co-utilization of green manure (GM) and rice straw (RS) in paddy fields has been widely applied as an effective practice in southern China.However,its effects on soil aggregate and soil organic carbon (SOC) stability remain unclear.In the present study,the effect of GM,RS,and co-utilization of GM and RS on particle size distribution of soil aggregates and SOC density fractions were measured in a field experiment.The experiment included six treatments,i.e.,winter fallow (WF) without RS return (Ctrl),WF with 50%RS return (1/2RS),WF with 100%RS return (RS),GM without RS return (GM),GM with 50%RS return (GM1/2RS) and GM with 100%RS return (GMRS).The results showed that the proportion of small macro-aggregates (0.25–2 mm) and the mean weight diameter (MWD) of aggregates in the GMRS treatment was greater (by 18.9 and 3.41%,respectively) than in the RS treatment,while the proportion of silt+clay particles (<0.053 mm) was lower (by 14.4%).The concentration of SOC in microaggregates (0.053–0.25 mm)and silt+clay particles was higher in the GMRS treatment than in GM and RS treatments individually.The concentration and proportion of free light organic carbon (fLOC) in aggregates of various particle sizes and bulk soil was greater in the GMRS treatment than the RS treatment,whereas the concentration and proportion of mineral-associated organic carbon in small macroaggregates,microaggregates,and bulk was lower in the GMRS treatment than in the RS treatment.The proportion of intra-aggregate particulate organic carbon (iPOC) was greater in the GMRS treatment than in GM treatment.The GMRS treatment had strong positive effects on iPOC in small macroaggregates,suggesting that SOC was transferred from fLOC to iPOC.In conclusion,co-utilizing green manure and rice straw cultivated the SOC pool by increasing the concentration of fLOC and improved soil carbon stability by promoting the sequestration of organic carbon in iPOC as a form of physical protection.
基金National Natural Science Foundation of China (32101857, 32372238, and U21A20218)the Fuxi Young Talents Fund of Gansu Agricultural University, China (Gaufx-03Y10)+1 种基金the Science and Technology Program of Gansu Province, China (23JRRA1407)the ‘Double First-Class’ Key Scientific Research Project of Education Department in Gansu Province, China (GSSYLXM-02)。
文摘Straw returning to the field is a technical measure of crop production widely adopted in arid areas. It is unknown whether crop yield can be further increased by improving the eco-physiological characteristics when straw returning is applied in the crop production system. So, a three-year field experiment was conducted with various straw returning treatments for wheat production:(i) no-tillage with straw mulching(NTSM),(ii) no-tillage with straw standing(NTSS),(iii) conventional tillage with straw incorporation(CTS), and(iv) conventional tillage with no straw returning(CT, control). The eco-physiological and yield formation indicators were investigated to provide the basis for selecting the appropriate straw returning method to increase wheat yield and clarifying its regulation mechanism on eco-physiology. The results showed that NTSM and NTSS treatments had better regulation of eco-physiological characteristics and had a higher yield increase than CTS and CT. Meanwhile, NTSM had a relatively higher yield than NTSS through better regulation of eco-physiological characteristics. Compared to CT, the leaf area index of NTSM was decreased by 6.1–7.6% before the Feekes 10.0 stage of wheat, but that of NTSM was increased by 38.9–45.1% after the Feekes 10.0 stage. NTSM effectively regulated the dynamics of the photosynthetic source of green leaves during the wheat growth period. NTSM improved net photosynthetic rate by 10.2–21.4% and 11.0–21.6%, raised transpiration rate by 4.4–10.0% and 5.3–6.1%, increased leaf water use efficiency by 5.6–10.4% and 5.4–14.6%, at Feekes 11.0 and 11.2 stages of wheat, compared to CT, respectively. NTSM had higher leaf water potential(LWP) by 7.5–12.0% and soil water potential(SWP) by 8.9–24.0% from Feekes 10.3 to 11.2 stages of wheat than CT. Meanwhile, the absolute value of difference on LWP and SWP with NTSM was less than that with CT, indicating that NTSM was conducive to holding the stability of water demand for wheat plants and water supply of soil at arid conditions. Thus, NTSM had a greater grain yield of wheat by 18.6–27.3% than CT, and the high yield was attributed to the synchronous increase and cooperative development of ear number, grain number per ear, and 1 000-grain weight. NTSM had a positive effect on regulating the eco-physiological characteristics and can be recommended to enhance wheat grain yield in arid conditions.
基金Under the auspices of Strategic Priority Research Program of the Chinese Academy of Sciences(No.XDA28070100)the National Key Research and Development Program of China(No.2022YFD1500100)+1 种基金the National Natural Science Foundation of China(No.41807085)the Earmarked Fund for China Agriculture Research System(No.CARS04)。
文摘Straw is widely incorporated into soil worldwide,but most studies have concentrated on the effects of straw mulching or incorporation with topsoil.To determine the effect of depth of straw incorporation on bacterial and fungal communities,we established a field experiment in a region in Northeast China with Haplic Chernozems using four treatments:conventional tillage(CT,tillage to a depth of 15 cm with no straw incorporation),straw incorporation with conventional tillage(SCT,tillage to a depth of 15 cm),inversion tillage(IT,tillage to a depth of 35 cm)and straw incorporation with inversion tillage(SIT,tillage to a depth of 35 cm).The soils were managed by inversion to a depth of 15 or 35 cm after harvest.The results show that soil organic carbon content was significantly higher and pH and bulk density were significantly lower in the 15–35 cm layer in IT and SIT than CT and SCT.Fungal abundance was higher with straw incorporation,but fungal diversity was lower in the 0–15 cm layer in SCT and SIT than in CT and IT.Path length in the bacterial network was shorter and connectivity was higher in CT+SCT than in IT+SIT,leading to a more complex ecosystem,and the fungal network had opposite patterns.The key taxa in the phylum Actinobacteriota and Ascomycota in the microbial networks changed dramatically at the genus level following inversion tillage with straw amendment,which may increase bacterial network resistance to environmental disturbances and unstable fungal networks,resulting in large changes in the fungal community involved in the decomposition of recalcitrant straw-derived C and the more efficient acquisition of limiting resources.
基金funded by the National Natural Science Foundation of China (31871584)the Agricultural Science and Technology Innovation Program, Chinese Academy of Agricultural Sciences (CAAS-ZDRW202201)+2 种基金the Fundamental Research Funds for Central Non-profit Scientific Institution, China (1610132020011)the “Open the list” in charge of the Science and Technology Project of Ordos, Center for Agro-pastoral Ecology and Resource Conservation of Ordos City, Inner Mongolia, China (JBGS2021-001)the Inner Mongolia Autonomous Region Research Project (2021EEDSCXSFQZD011)。
文摘Soil salinization is a critical environmental issue restricting agricultural production.Deep return of straw to the soil as an interlayer (at 40 cm depth) has been a popular practice to alleviate salt stress.However,the legacy effects of straw added as an interlayer at different rates on soil organic carbon (SOC) and total nitrogen (TN) in saline soils still remain inconclusive.Therefore,a four-year (2015–2018) field experiment was conducted with four levels (i.e.,0,6,12and 18 Mg ha~(–1)) of straw returned as an interlayer.Compared with no straw interlayer (CK),straw addition increased SOC concentration by 14–32 and 11–57%in the 20–40 and 40–60 cm soil layers,respectively.The increases in soil TN concentration (8–22 and 6–34%in the 20–40 and 40–60 cm soil layers,respectively) were lower than that for SOC concentration,which led to increased soil C:N ratio in the 20–60 cm soil depth.Increases in SOC and TN concentrations in the 20–60 cm soil layer with straw addition led to a decrease in stratification ratios (0–20 cm:20–60 cm),which promoted uniform distributions of SOC and TN in the soil profile.Increases in SOC and TN concentrations were associated with soil salinity and moisture regulation and improved sunflower yield.Generally,compared with other treatments,the application of 12 Mg ha~(–1) straw had higher SOC,TN and C:N ratio,and lower soil stratification ratio in the2015–2017 period.The results highlighted that legacy effects of straw application as an interlayer were maintained for at least four years,and demonstrated that deep soil straw application had a great potential for improving subsoil fertility in salt-affected soils.
文摘Recently,increasing evidence suggests that DNA methylation plays a crucial role in fruit ripening.However,the role of DNA methylation in regulating specific traits,such as flavor,remains unclear.Here,we report a role of DNA methylation in affecting furanone biosynthesis in strawberry.Strawberry quinone oxidoreductase(FaQR)is a key enzyme in furanone biosynthesis.There are four FaQR homologs in strawberry cultivar‘Yuexin’,and one of them,FaQR3,contributes∼50%of FaQR transcripts,indicating a major role of FaQR3 in furanone biosynthesis.Through characterization of levels of DNA methylation and FaQR3 transcript and furanone contents during fruit ripening and after the application of DNA methylation inhibitor,we found that the DNA methylation level of the FaQR3 promoter was negatively correlated with FaQR3 expression and furanone accumulation,suggesting that DNA methylation may be involved in furanone biosynthesis through adjusting FaQR3 expression,and responded to different temperatures consistently.In addition,transient expression of a gene in the RNA-directed DNA methylation(RdDM)pathway,FaAGO4,and enrichment analysis of the 24-nucleotide siRNAs suggested that DNA methylation in the FaQR3 promoter is mediated by the RdDM pathway.Transient RNA interference(RNAi)of FaDML indicated that the demethylation pathway may be involved in regulating furanone accumulation.These findings provide new insights into the role of DNA methylation and demethylation in affecting flavor quality in strawberry during fruit ripening.
基金Thisworkwas supported by the National Natural Science Foundation of China(32222074,32072551)the National Key Research and Development Program of China(2022YFD2100102-3)+2 种基金111 Project(B17043)Beijing Innovation Consortium of Agriculture Research System(BAIC04-2022)the 2115 Talent Development Program of China Agricultural University.
文摘The WRKY transcription factors play important roles in plant growth and resistance,but only a few members have been identified in strawberry.Here we identified a WRKY transcription factor,FvWRKY50,in diploid strawberry which played essential roles in strawberry vegetative growth,and reproductive growth.Knocking out FvWRKY50 by genome editing accelerated flowering time and leaf senescence but delayed anthocyanin accumulation in fruit.Further analysis showed that FvWRKY50 acted as a transcriptional repressor to negatively regulate the expression of flowering-and leaf senescence-related genes,including FvFT2,FvCO,FvFT3,and FvSAUR36.Notably,FvWRKY50 directly upregulated the expression of FvCHI and FvDFR by binding their promoter under normal conditions,but at low temperature FvWRKY50 was phosphorylated by FvMAPK3 and then induced protein degradation by ubiquitination,delaying anthocyanin accumulation.In addition,the homozygous mutant of FvWRKY50 was smaller while the biallelic mutant showed normal size.These new findings provide important clues for us to further reveal the regulatory mechanisms of strawberry growth and fruit ripening.
基金This research was supported in part by the Priority Academic Program Development of Jiangsu Higher Education Institutions and the State Key Laboratory of Crop Genetics and Germplasm Enhancement(ZW201813).
文摘Necrotrophic pathogens replicate massively upon colonizing plants,causing large-scale wilting and death of plant tissues.Under-standing both mechanisms of pathogen invasion and host response processes prior to symptom appearance and their key regulatory networks is therefore important for defense against pathogen attack.Here,we investigated the mechanisms of interaction between woodland strawberry(Fragaria vesca)leaves and gray mold pathogen(Botrytis cinerea)at 14 infection time points during the first 12 hours of the infection period using a dense,high-resolution time series dual transcriptomic analysis,characterizing the arms race between strawberry F.vesca and B.cinerea before the appearance of localized lesions.Strawberry leaves rapidly initiated strong systemic defenses at the first sign of external stimulation and showed lower levels of transcriptomic change later in the infection process.Unlike the host plants,B.cinerea showed larger-scale transcriptomic changes that persisted throughout the infection process.Weighted gene co-expression network analysis identified highly correlated genes in 32 gene expression modules between B.cinerea and strawberry.Yeast two-hybrid and bimolecular fluorescence complementation assays revealed that the disease response protein FvRLP2 from woodland strawberry interacted with the cell death inducing proteins BcXYG1 and BcPG3 from B.cinerea.Overexpression of FvRLP2 in both strawberry and Arabidopsis inhibited B.cinerea infection,confirming these genes’respective functions.These findings shed light on the arms race process by which B.cinerea invades host plants and strawberry to defend against pathogen infection.
基金This work was supported by the National Natural Science Foundation of China(32172539)the Fundamental Research Funds for the Central Universities(2662022YLPY002).
文摘Light is an important environmental signal that influences plant growth and development.Among the photoreceptors,phytochromes can sense red/far-red light to coordinate various biological processes.However,their functions in strawberry are not yet known.In this study,we identified an EMS mutant,named P8,in woodland strawberry(Fragaria vesca)that showed greatly increased plant height and reduced anthocyanin content.Mapping-by-sequencing revealed that the causal mutation in FvePhyB leads to premature termination of translation.The light treatment assay revealed that FvePhyB is a bona fide red/far-red light photoreceptor,as it specifically inhibits hypocotyl length under red light.Transcriptome analysis showed that the FvePhyB mutation affects the expression levels of genes involved in hormone synthesis and signaling and anthocyanin biosynthesis in petioles and fruits.The srl mutant with a longer internode is caused by a mutation in the DELLA gene FveRGA1(Repressor of GA1)in the gibberellin pathway.We found that the P8 srl double mutant has much longer internodes than srl,suggesting a synergistic role of FvePhyB and FveRGA1 in this process.Taken together,these results demonstrate the important role of FvePhyB in regulating plant architecture and anthocyanin content in woodland strawberry.
基金We would like to thank Mr.Andrew Tong for help in implementing the hyperlinks of the database and members of the Liu lab for helpful comments on the website.This work has been supported by a grant from the National Science Foundation(NSF)(IOS-1444987)to ZLSMM.ML was supported in part by an National Science Foundation award(DGE-1632976).
文摘Rosaceae is a large plant family consisting of many economically important fruit crops including peach,apple,pear,strawberry,raspberry,plum,and others.Investigations into their growth and development will promote both basic understanding and progress toward increasing fruit yield and quality.With the ever-increasing high-throughput sequencing data of Rosaceae,comparative studies are hindered by inconsistency of sample collection with regard to tissue,stage,growth conditions,and by vastly different handling of the data.Therefore,databases that enable easy access and effective utilization of directly comparable transcript data are highly desirable.Here,we describe a database for comparative analysis,ROsaceae Fruit Transcriptome database(ROFT),based on RNA-seq data generated from the same laboratory using similarly dissected and staged fruit tissues of four important Rosaceae fruit crops:apple,peach,strawberry,and red raspberry.Hence,the database is unique in allowing easy and robust comparisons among fruit gene expression across the four species.ROFT enables researchers to query orthologous genes and their expression patterns during different fruit developmental stages in the four species,identify tissue-specific and tissue-/stage-specific genes,visualize and compare ortholog expression in different fruit types,explore consensus co-expression networks,and download different data types.The database provides users access to vast amounts of RNA-seq data across the four economically important fruits,enables investigations of fruit type specification and evolution,and facilitates the selection of genes with critical roles in fruit development for further studies.
基金This work was finan-cially supported by Liao Ning Revitalization Talents Program(No.XLYC1902069).
文摘Leaves and f lowers are crucial for the growth and development of higher plants.In this study we identified a mutant with narrow leaf lets and early f lowering(nlef)in an ethyl methanesulfonate-mutagenized population of woodland strawberry(Fragaria vesca)and aimed to identify the candidate gene.Genetic analysis revealed that a single recessive gene,nlef,controlled the mutant phenotype.We found that FvH4_1g25470,which encodes a putative DNA polymeraseαwith a polymerase and histidinol phosphatase domain(PHP),might be the candidate gene,using bulked segregant analysis with whole-genome sequencing,molecular markers,and cloning analyses.A splice donor site mutation(C to T)at the 5-end of the second intron led to an erroneous splice event that reduced the expression level of the full-length transcript of FvePHP in mutant plants.FvePHP was localized in the nucleus and was highly expressed in leaves.Silencing of FvePHP using the virus-induced gene silencing method resulted in partial developmental defects in strawberry leaves.Overexpression of the FvePHP gene can largely restore the mutant phenotype.The expression levels of FveSEP1,FveSEP3,FveAP1,FveFUL,and FveFT were higher in the mutants than those in‘Yellow Wonder’plants,probably contributing to the early f lowering phenotype in mutant plants.Our results indicate that mutation in FvePHP is associated with multiple developmental pathways.These results aid in understanding the role of DNA polymerase in strawberry development.
基金supported by the Ministerio de Ciencia,Innovación y Universidades and FEDER EU funds(grant numbers AGL2017-86531-C2-1R and PID2020-118468RB-C21)the University of Malaga(grant number B1-2020_09)+1 种基金CS-R was awarded a PhD Fellowship from the Ministerio de Ciencia,Innovación y Universidades(PRE2018-085509)PhD Program Advanced Biotechnology,University of Málaga.
文摘Firmness is one of the most important fruit quality traits in strawberries.The postharvest shelf life of this soft fruit is highly limited by the loss of firmness,where cell wall disassembly plays an important role.Previous studies demonstrated that the polygalacturonase FaPG1 has a key role in remodelling pectins during strawberry softening.In this study,FaPG1 knockout strawberry plants have been generated using the CRISPR/Cas9 system delivered via Agrobacterium tumefaciens.Ten independent lines,cv.“Chandler”,were obtained,and all of them were successfully edited as determined by PCR amplification and T7 endonuclease assay.The targeted mutagenesis insertion and deletion rates were analyzed using targeted deep sequencing.The percentage of edited sequences varied from 47%up to almost 100%,being higher than 95%for seven of the selected lines.Phenotypic analyses showed that 7 out of the eight lines analyzed produced fruits significantly firmer than the control,ranging from 33 to 70%increase in firmness.There was a positive relationship between the degree of FaPG1 editing and the rise in fruit firmness.Minor changes were observed in other fruit quality traits,such as colour,soluble solids,titratable acidity or anthocyanin content.Edited fruits showed a reduced softening rate during postharvest,displayed a reduced transpirational water loss,and were less damaged by Botrytis cinerea inoculation.The analysis of four potential off-target sites revealed no mutation events.In conclusion,editing the FaPG1 gene using the CRISPR/Cas9 system is an efficient method for improving strawberry fruit firmness and shelf life.
