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Combining single-cell RNA sequencing and population-based studies reveals hand osteoarthritis-associated chondrocyte subpopulations and pathways
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作者 Hui Li Xiaofeng Jiang +11 位作者 Yongbing Xiao Yuqing Zhang Weiya Zhang Michael Doherty Jacquelyn Nestor Changjun Li Jing Ye Tingting Sha Houchen Lyu Jie Wei Chao Zeng Guanghua Lei 《Bone Research》 SCIE CAS CSCD 2023年第4期834-846,共13页
Hand osteoarthritis is a common heterogeneous joint disorder with unclear molecular mechanisms and no disease-modifying drugs.In this study,we performed single-cell RNA sequencing analysis to compare the cellular comp... Hand osteoarthritis is a common heterogeneous joint disorder with unclear molecular mechanisms and no disease-modifying drugs.In this study,we performed single-cell RNA sequencing analysis to compare the cellular composition and subpopulationspecific gene expression between cartilage with macroscopically confirmed osteoarthritis(n=5)and cartilage without osteoarthritis(n=5)from the interphalangeal joints of five donors.Of 105142 cells,we identified 13 subpopulations,including a novel subpopulation with inflammation-modulating potential annotated as inflammatory chondrocytes.Fibrocartilage chondrocytes exhibited extensive alteration of gene expression patterns in osteoarthritic cartilage compared with nonosteoarthritic cartilage.Both inflammatory chondrocytes and fibrocartilage chondrocytes showed a trend toward increased numbers in osteoarthritic cartilage.In these two subpopulations from osteoarthritic cartilage,the ferroptosis pathway was enriched,and expression of iron overload-related genes,e.g.,FTH1,was elevated.To verify these findings,we conducted a Mendelian randomization study using UK Biobank and a population-based cross-sectional study using data collected from Xiangya Osteoarthritis Study.Genetic predisposition toward higher expression of FTH1 mRNA significantly increased the risk of hand osteoarthritis(odds ratio=1.07,95%confidence interval:1.02–1.11)among participants(n=332668)in UK Biobank.High levels of serum ferritin(encoded by FTH1),a biomarker of body iron overload,were significantly associated with a high prevalence of hand osteoarthritis among participants(n=1241)of Xiangya Osteoarthritis Study(P-for-trend=0.037).In conclusion,our findings indicate that inflammatory and fibrocartilage chondrocytes are key subpopulations and that ferroptosis may be a key pathway in hand osteoarthritis,providing new insights into the pathophysiology and potential therapeutic targets of hand osteoarthritis. 展开更多
关键词 OSTEOARTHRITIS subpopulations ELEVATED
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Early Changes of Peripheral Blood Lymphocyte Subpopulations in Patients with Occupational 2,4-dinitrophenol Poisoning 被引量:4
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作者 JIANG Jiu Kun FANG Wen +1 位作者 GU Lin Hui LU Yuan Qiang 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 2016年第12期909-914,共6页
2,4-dinitrophenol(DNP),an organic compound which frequently used in industry,is considered to have high toxicity.This study aimed to investigate the early changes of lymphocyte subpopulations in patients with occupati... 2,4-dinitrophenol(DNP),an organic compound which frequently used in industry,is considered to have high toxicity.This study aimed to investigate the early changes of lymphocyte subpopulations in patients with occupational 2,4-DNP poisoning.Totally 9 patients with acute occupational 2,4-DNP poisoning and 30 healthy volunteers as 展开更多
关键词 DNP Early Changes of Peripheral Blood Lymphocyte subpopulations in Patients with Occupational 2 4-dinitrophenol Poisoning
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Correlation of Quantitative Changes in Bone Marrow Lymphocyte Subpopulations with Some Rhabdomyosarcoma Prognosis Factors in Children
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作者 Olga P. Kolbatskaya Tatiana V. Gorbunova +3 位作者 Svetlana V. Chulkova Anna A. Khachatryan Nikolai N. Tupitsyn Vladimir G. Polyakov 《Advances in Biological Chemistry》 2021年第5期234-250,共17页
<span style="font-family:Verdana;"><strong>Rationale</strong></span><b><span style="font-family:Verdana;">:</span></b><span style="font-famil... <span style="font-family:Verdana;"><strong>Rationale</strong></span><b><span style="font-family:Verdana;">:</span></b><span style="font-family:Verdana;"> The known prognosis factors for rhabdomyosarcoma (RMS) in</span><span style="font-family:;" "=""> <span style="font-family:Verdana;">children do not always explain the unsatisfactory outcome of treatment.</span><span style="font-family:Verdana;"> Changes in the subpopulation composition of Bone Marrow (BM) effector cells during </span><span style="font-family:Verdana;">the development of RMS may indicate new directions for the search for </span><span style="font-family:Verdana;">prog</span><span><span style="font-family:Verdana;">nostic factors and points for the impact of targeted therapy. </span><b><span style="font-family:Verdana;">Purpose</span></b></span></span><b><span style="font-family:Verdana;">:</span></b><span style="font-family:Verdana;"> To</span><span style="font-family:;" "=""><span style="font-family:Verdana;"> identify correlations between quantitative changes in the levels of subpopulations of T, B and NK-lymphocytes of BM and known risk factors for RMS in child</span><span><span style="font-family:Verdana;">ren. </span><b><span style="font-family:Verdana;">Objects</span></b></span></span><b><span style="font-family:Verdana;">:</span></b><span style="font-family:Verdana;"> The study included 31 patients. The main group included 16</span><span style="font-family:;" "=""><span style="font-family:Verdana;"> patients with RMS, average age—6.8 ± 1.0 years, while children 1 - 10 years old—13 (81.3%), over 10 years old—3 (18.8%) people, girls and boys were 8 </span><span style="font-family:Verdana;">people each. The embryonic variant of RMS was established in 10 (62.5%) </span><span style="font-family:Verdana;">cases, the alveolar variant—in 4 (25%) cases, in two patients (12</span></span><span style="font-family:Verdana;">.</span><span style="font-family:;" "=""><span style="font-family:Verdana;">5%), the histological variant was not established. In 12 (75%) patients, an unfavorable loca</span><span style="font-family:Verdana;">lization of the RMS (parameningeal, extremities, prostate, bladder) was re</span><span style="font-family:Verdana;">vealed, in 4 patients (25%), the localization of </span></span><span style="font-family:Verdana;">the </span><span style="font-family:;" "=""><span style="font-family:Verdana;">tumor was regarded as favorable. Patients with T2b—13 (81.2%) and T2a—2 (12.5%) stages prevailed. Regional and distant metastases were detected in 10 (52.6%) patients. The comparison group included 15 children in whom the presence of malignant neoplasia was excluded, the average age was 8.4 ± 1.5 years, 11 boys (73.7%) and 4 girls </span><span><span style="font-family:Verdana;">(26.3%). </span><b><span style="font-family:Verdana;">Methods</span></b></span></span><b><span style="font-family:Verdana;">:</span></b><span style="font-family:Verdana;"> All patients underwent morphological (myelogram</span><span style="font-family:;" "=""><span style="font-family:Verdana;"> count</span><span style="font-family:Verdana;">ing) and immunological (quantitative analysis of lymphocytic subpopula</span><span style="font-family:Verdana;">tions) bone marrow studies. Immunophenotyping in all patients was carried out by direct immunofluorescence using a triple fluorescent label. </span><b><span style="font-family:Verdana;">Results</span></b></span><b><span style="font-family:Verdana;">:</span></b><b><span style="font-family:;" "=""> </span></b><span style="font-family:;" "=""><span style="font-family:Verdana;">Significant differences in the levels of subpopulations of BM T-lymphocytes were found when comparing the values of the main group, distributed by localization and histological variant, with the data obtained in the control group of patients. For example, the percentage of </span><span style="font-family:Verdana;">CD3+ T cells with the co-stimulatory molecule CD28+ was significantly higher in patients with parameningeal </span><span style="font-family:Verdana;">RMS </span><span><span style="font-family:Verdana;">(p = 0.010). </span><b><span style="font-family:Verdana;">Conclusion</span></b></span></span><b><span style="font-family:Verdana;">:</span></b><span style="font-family:Verdana;"> Each clinical group of patients has its own individual immunological characteristics. The results obtained by us can be considered indicative and regarded as starting points for further study of the peculiarities of the subpopulation composition of BM in patients with RMS.</span> 展开更多
关键词 RHABDOMYOSARCOMA Bone Marrow CHILDREN Lymphocyte subpopulations
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T Lymphocyte Subpopulations in Normal Pregnancies and Those Complicated by Eclampsia in Kaduna State, Nigeria
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作者 J. M. Banda B. O. P. Musa +6 位作者 G. C. Onyemelukwe S. O. Shittu A. A. Babadoko A. G. Bakari A. I. Mamman A. Sarkin-Pawa Surajudeen A. Junaid 《Open Journal of Immunology》 2016年第3期93-100,共8页
Background: Eclampsia, the occurrence of generalized convulsion(s) in association with signs of preeclampsia [PE] (hypertension and proteinuria) in pregnancy has remained a significant public threat in Nigeria, contri... Background: Eclampsia, the occurrence of generalized convulsion(s) in association with signs of preeclampsia [PE] (hypertension and proteinuria) in pregnancy has remained a significant public threat in Nigeria, contributing to maternal and perinatal morbidity and mortality. This study was a comparative cross-sectional study conducted in some selected hospitals in Kaduna State, between April 2014 and November 2015. Subjects and Methods: Blood (3 mls) was collected into an ethylenediaminetetraaccetic acid (EDTA) vacutainer tube from third trimester women diagnosed with eclampsia (EC;n = 38) and healthy pregnant controls (PC;n = 38)—age and parity matched and healthy non-pregnant controls (NPC;n = 38)—age matched. T Cell subpopulations and Complete Blood Count levels were measured by Sysmex, Auto blood analyzer and flow cytometry respectively. Participants with smear positive malaria, seropositive for human immunodeficiency virus (HIV), any other clinical infection or refused consent were excluded from this study. Data obtained were analyzed using analysis of variance (ANOVA) and Post Hoc test. A p-value of less than 0.05 was considered to be significant. Result: Overall, results showed a depressed (mean ± Standard deviation (SD): CD3+ T cell (65.6 ± 15.5%;1225.5 ± 401.5 cell/μL), CD4+ T cell (36.1 ± 8.7%;657.1 ± 189.9 cell/μL), and a low CD4/CD8 value in women with EC (1.4 ± 0.5) and PC (1.5 ± 0.3) compared to NPC (1.9 ± 0.6) control (p < 05), while the total white blood cell count, and differential percentage neutrophils count were noted to be elevated among the eclamptic women (9.8 ± 4.9 × 109/L;70.3 ± 12.0%) compared to PC (6.9 ± 3.6 × 109/L;64.6 ± 8.1%) and NPC (5.6 ± 2.0 × 109/L;48.5 ± 10.7%), p < 0.05. Conclusion: Eclampsia was associated with significantly depressed CD3+ and CD4+ T lymphocyte, and increased percentage differential neutrophil counts. 展开更多
关键词 ECLAMPSIA PREECLAMPSIA PREGNANCY T Cell subpopulations
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MINIMUM ATTRIBUTE CO-REDUCTION ALGORITHM BASED ON MULTILEVEL EVOLUTIONARY TREE WITH SELF-ADAPTIVE SUBPOPULATIONS
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作者 丁卫平 王建东 《Transactions of Nanjing University of Aeronautics and Astronautics》 EI 2013年第2期175-184,共10页
Attribute reduction is an important process in rough set theory.Finding minimum attribute reduction has been proven to help the user-oriented make better knowledge discovery in some cases.In this paper,an efficient mi... Attribute reduction is an important process in rough set theory.Finding minimum attribute reduction has been proven to help the user-oriented make better knowledge discovery in some cases.In this paper,an efficient minimum attribute reduction algorithm is proposed based on the multilevel evolutionary tree with self-adaptive subpopulations.A model of multilevel evolutionary tree with self-adaptive subpopulations is constructed,and interacting attribute sets are better decomposed into subsets by the self-adaptive mechanism of elitist populations.Moreover it can self-adapt the subpopulation sizes according to the historical performance record so that interacting attribute decision variables are captured into the same grouped subpopulation,which will be extended to better performance in both quality of solution and competitive computation complexity for minimum attribute reduction.The conducted experiments show the proposed algorithm is better on both efficiency and accuracy of minimum attribute reduction than some representative algorithms.Finally the proposed algorithm is applied to magnetic resonance image(MRI)segmentation,and its stronger applicability is further demonstrated by the effective and robust segmentation results. 展开更多
关键词 minimum attribute reduction self-adaptive subpopulation multilevel evolutionary tree interacting decision variable magnetic resonance image(MRI)segmentation
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Defining two subpopulations of marginal zone B cells
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作者 Xiaojing Liu Fei-Long Meng 《Cellular & Molecular Immunology》 SCIE CAS CSCD 2024年第4期412-413,共2页
Marginal zone(MZ)B cells,which are composed of heterogeneous subpopulations,are participate in the rapid response to antigens.Lee et al.showed that MZ B cells can be divided into two distinct subpopulations based on C... Marginal zone(MZ)B cells,which are composed of heterogeneous subpopulations,are participate in the rapid response to antigens.Lee et al.showed that MZ B cells can be divided into two distinct subpopulations based on CD80 expression.These two subpopulations of MZ B cells exhibit differential autoreactivity,radiosensitivity,and functional capacities. 展开更多
关键词 expression. subpopulations al.
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Sperm subpopulations in avian species: a comparative study between the rooster (Gallus domesticus) and Guinea fowl (Numida meleagris)
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作者 Manuel Garcia-Herreros 《Asian Journal of Andrology》 SCIE CAS CSCD 2016年第6期889-894,共6页
这研究的主要目的是在客观 morphometric 精子特征学习可能的差别,建立标准精子 morphometry 标准,并且评估从公鸡(吊裤带 domesticus ) 和象模型的畿尼家禽(Numida meleagris ) 的鸟的精子的假定不同 subpopulation 分发鸟的种类。72... 这研究的主要目的是在客观 morphometric 精子特征学习可能的差别,建立标准精子 morphometry 标准,并且评估从公鸡(吊裤带 domesticus ) 和象模型的畿尼家禽(Numida meleagris ) 的鸟的精子的假定不同 subpopulation 分发鸟的种类。72 精液(36 每种类学习了) 手工地被获得,跟随轻轻地包含的一个训练时期联合了鸟的 dorso 腹、 lumbo 骶的按摩。精液为体积,精子集中,生存能力,活动性,和形态学被处理。而且,样品为 Morphometry (CASA-Morph ) 方法用客观帮助计算机的精液分析为精子 morphometric 评价被提交,与精子 morphometric,描述符由主要部件分析(PCA ) 和 multivariate 聚类分析评估了。有几差别,在为精液体积和精子集中获得的价值在鸟的种类之间观察(P &#x0003c;0.001 ) 。不管种类, PCA 揭示了解释超过 80% 变化的二个主要部件(PC ) 。另外, subpopulations 的数字与种类不同(为公鸡和畿尼家禽的三和五 subpopulations,分别地) 。而且,精子 subpopulations 的分发在种类之间被发现是在结构上不同。在结论,我们从使用方法显示的 CASA-Morph 的调查结果读了在这之间的精子 morphometric 变化二鸟的种。因为在 morphometric 参数值和他们的 subpopulation 分发观察的强壮的差别,这些结果建议象 CASA-Morph 那样的客观分析方法的申请能实质地改进比较研究的可靠性并且帮助建立有效标准精子为鸟的种类的词法值。 展开更多
关键词 吊裤带 domesticus Numida meleagris 主要部件分析 精子 morphometry 精子 subpopulations
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Identification and characterization of two morphologically distinct stem cell subpopulations from human urine samples 被引量:7
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作者 An-Jing Chen Jin-Kui Pi +5 位作者 Jun-Gen Hu Yi-Zhou Huang Hong-Wei Gao Sheng-Fu Li Jesse Li-Ling Hui-Qi Xie 《Science China(Life Sciences)》 SCIE CAS CSCD 2020年第5期712-723,共12页
Urine-derived stem cells(USCs)have shown potentials for the treatment of skeletal and urological disorders.Based on published literature and our own data,USCs consist of heterogeneous populations of cells.In this pape... Urine-derived stem cells(USCs)have shown potentials for the treatment of skeletal and urological disorders.Based on published literature and our own data,USCs consist of heterogeneous populations of cells.In this paper,we identify and characterize two morphologically distinct subpopulations of USCs from human urine samples,named as spindle-shaped USCs(SS-USCs)and rice-shaped USCs(RS-USCs)respectively.The two subpopulations showed similar clone-forming efficiency,while SS-USCs featured faster proliferation,higher motility,and greater potential for osteogenic and adipogenic differentiation,RS-USCs showed greater potential for chondrogenic differentiation.POU5F1 was strongly expressed in both subpopulations,but MYC was weakly expressed.Both subpopulations showed similar patterns of CD24,CD29,CD34,CD44,CD73,CD90 and CD105 expression,while a higher percentage of RS-USCs were positive for CD133.SS-USCs were positive for VIM,weakly positive for SLC12A1 and UMOD,and negative for KRT18,NPHS1,AQP1 and AQP2,indicating a renal mesenchyme origin;while RSUSCs are positive for VIM,partially positive for KRT18,NPHS1,AQP1,SLC12A1 and UMOD,and negative for AQP2,indicating a nephron tubule origin.The above results can facilitate understanding of the biological characteristics of subpopulations of USCs,and provide a basis for further research and applications of such cells. 展开更多
关键词 CHARACTERIZATION cell subpopulation IDENTIFICATION tissue origin urine-derived stem cells
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The Influence of Age and Sex on the Cell Counts of Peripheral Blood Leukocyte Subpopulations in Chinese Rhesus Macaques 被引量:5
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作者 Hou-Jun Xia Gao-Hong Zhang +1 位作者 Rui-Rui Wang Yong-Tang Zheng 《Cellular & Molecular Immunology》 SCIE CAS CSCD 2009年第6期433-440,共8页
Non-human primates such as Chinese rhesus macaques are the favorable models for preclinical study of potential therapeutic drugs,vaccines and mechanisms of human diseases.Little is known about the normal levels of leu... Non-human primates such as Chinese rhesus macaques are the favorable models for preclinical study of potential therapeutic drugs,vaccines and mechanisms of human diseases.Little is known about the normal levels of leukocyte subpopulations of Chinese rhesus macaques.To obtain these data,100 blood samples from Chinese rhesus macaques were collected.The normal range of major leukocyte subpopulations,such as T lymphocytes,B lymphocytes,monocytes,myeloid dendritic cells(mDCs)and plasmacytoid dendritic cells(pDCs),were quantitatively analyzed by flow cytometry through BD trucount tubes.The influence of age and sex on the cell counts of leukocyte subpopulations was analyzed.The counts of CD3^(+)T cells,CD3+CD4^(+)T cells,CD3+CD8^(+)T cells and B cells decreased with age,but those of monocytes,mDCs and pDCs had no significant correlation with age.Significant differences existed in the cell counts of most leukocyte subpopulations between the male and female groups except pDCs.Furthermore the values of the females were higher than those of the males.The study provided basic information about the leukocyte subpopulations of Chinese rhesus macaques,and it may be valuable for immunobiological study of Chinese rhesus macaques. 展开更多
关键词 Chinese rhesus macaque leukocyte subpopulation absolute count age SEX
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Use of routine HIV testing data for early detection of emerging HIV epidemics in high-risk subpopulations:A concept demonstration study
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作者 Houssein H.Ayoub Susanne F.Awad Laith J.Abu-Raddad 《Infectious Disease Modelling》 2018年第1期373-384,共12页
Introduction:HIV epidemics in hard-to-reach high-risk subpopulations are often discovered years after epidemic emergence in settings with poor surveillance infrastructure.Using hypothesis-generation modeling,we aimed ... Introduction:HIV epidemics in hard-to-reach high-risk subpopulations are often discovered years after epidemic emergence in settings with poor surveillance infrastructure.Using hypothesis-generation modeling,we aimed to investigate and demonstrate the concept of using routine HIV testing data to identify and characterize hidden epidemics in high-risk subpopulations.We also compared this approach to surveillance based on AIDS case notifications.Methods:A deterministic mathematical model was developed to simulate an emerging HIV epidemic in a high-risk subpopulation.A stochastic Monte Carlo simulation was implemented on the total population to simulate the sampling process of generating routine HIV testing data.Epidemiological measures were estimated on the simulated epidemic and on the generated testing sample.Sensitivity analyses were conducted on the results.Results:In the simulated epidemic,HIV prevalence saturated at 32%in the high-risk subpopulation and at 0.33%in the total population.The epidemic started its emergingepidemic phase 28 years after infection introduction,and saturated 67 years after infection introduction.In the simulated HIV testing sample,a significant time trend in prevalence was identified,and the generated metrics of epidemic emergence and saturation were similar to those of the simulated epidemic.The epidemic was identified 4.0(95%CI 3.4e4.6)years after epidemic emergence using routine HIV testing,but 29.7(95%CI 15.8 e52.1)years after emergence using AIDS case notifications.In the sensitivity analyses,none of the sampling biases affected the conclusion of an emerging epidemic,but some affected the estimated epidemic growth rate.Conclusions:Routine HIV testing data provides a tool to identify and characterize hidden and emerging epidemics in high-risk subpopulations.This approach can be specially useful in resource-limited settings,and can be applied alone,or along with other complementary data,to provide a meaningful characterization of emerging but hidden epidemics. 展开更多
关键词 HIV High-risk subpopulation Surveillance Mathematical modeling Monte Carlo simulations Epidemiology Sexually transmitted infection
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Single-Cell RNA Sequencing Reveals Potential for Endothelial-to-Mesenchymal Transition in Tetralogy of Fallot
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作者 Aisa Zulibiya Jing Wen +4 位作者 Huiqing Yu Xiaoming Chen Lei Xu Xiao Ma Baojian Zhang 《Congenital Heart Disease》 SCIE 2023年第6期611-625,共15页
Background:Tetralogy of Fallot(TOF)is a very common cyanotic congenital heart disease.Endothelial-to-mesenchymal transition(EndoMT)is recognized as a physiological mechanism involved in embryonic heart development and... Background:Tetralogy of Fallot(TOF)is a very common cyanotic congenital heart disease.Endothelial-to-mesenchymal transition(EndoMT)is recognized as a physiological mechanism involved in embryonic heart development and endothelial formation.However,there is still a gap in the reports related to the mechanism of EndoMT development in TOF.Methods:First,transcriptomic data of single cell nuclei of TOF and Donor were obtained based on the Gene Expression Omnibus(GEO)database,and the data were normalized and clus-tered by dimensionality reduction using the Seurat package.Subsequently,differentially expressed genes(DEGs)between TOF and Donor were screened using the“FindMarkers”function,and the gene sets of interest were enriched.Finally,to characterize the dynamics of EndoMT occurrence in TOF,we performed pseudotime cell tra-jectory inference as well as utilized SCENIC analysis to probe the gene regulatory networks(GRNs)dominated by transcription factors(TFs)in endothelial cells.Results:We identified a total of six cell clusters based on single-cell nuclear transcriptome data from TOF and Donor.We found that 611 genes with up-regulated expression within TOF showed conversion to mesenchyme.By subdividing endothelial cell subtypes,endothelial cells 2 were shown to be involved in cell adhesion,migration and extracellular matrix processes.Pseudo-time and SCENIC analyses showed that endothelial cell 2 has EndoMT potential.In addition,ERG and TEAD1 are TFs that play key reg-ulatory roles in this subtype,and both of their target genes are also highly expressed in TOF.This demonstrates that ERG and TEAD1 effectively promote the EndoMT process.Conclusion:Our study reveals the molecular mechanisms underlying the development of EndoMT in TOF,which demonstrates that manipulating the endothelial-to-mesenchymal transition may offer unprecedented therapeutic potential for the treatment of TOF. 展开更多
关键词 Tetralogy of Fallot endothelial cells endothelial-mesenchymal transition congenital heart disease cellular subpopulation
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Analysis of the Distribution of Tulipa fosteriana and Tulipa ingens. The Importance of Protecting Wild Plants, in Particular Tulips All over the World
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作者 Shukrullozoda Roza Shukrullo Qizi Dekhkonov Davron Burxonovich +3 位作者 Khaydarov Khislat Kudratovich Umurzakova Zebuniso Iskandarovna Olimjonova Sadoqat Gùlomjon Qizi Norimova Guljakhon Komiljon Qizi 《American Journal of Plant Sciences》 CAS 2023年第5期613-624,共12页
The assessment of the distribution and importance of the protection of tulip varieties around the world and separately rare, wild-growing ancestors of cultivated tulips, in particular Tulipa fosteriana and Tulipa inge... The assessment of the distribution and importance of the protection of tulip varieties around the world and separately rare, wild-growing ancestors of cultivated tulips, in particular Tulipa fosteriana and Tulipa ingens on the globe, including Central Asia, Uzbekistan and the Samarkand region, was described. A distribution map was introduced to visualize the data. Information about the morphological description of the studied species was also given. 展开更多
关键词 Distribution Area Threat of Extinction Protection SUBPOPULATION “Hot Spot”
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road to stemness in hepatocellular carcinoma 被引量:4
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作者 Teresita NJ Flores-Téllez Saúl Villa-Trevino Carolina Pina-Vázquez 《World Journal of Gastroenterology》 SCIE CAS 2017年第37期6750-6776,共27页
Carcinogenic process has been proposed to relay on the capacity to induce local tissue damage and proliferative repair. Liver has a great regeneration capacity and currently, most studies point towards the dominant ro... Carcinogenic process has been proposed to relay on the capacity to induce local tissue damage and proliferative repair. Liver has a great regeneration capacity and currently, most studies point towards the dominant role of hepatocytes in regeneration at all levels of liver damage. The most frequent liver cancer is hepatocellular carcinoma(HCC). Historical findings originally led to the idea that the cell of origin of HCC might be a progenitor cell. However, current linage tracing studies put the progenitor hypothesis of HCC origin into question. In agreement with their dominant role in liver regeneration, mature hepatocytes are emerging as the cell of origin of HCC, although, the specific hepatocyte subpopulation of origin is yet to be determined. The relationship between the cancer cell of origin(CCO) and cancer-propagating cells, known as hepatic cancer stem cell(HCSC) is unknown. It has been challenging to identify the definitive phenotypic marker of HCSC, probably due to the existence of different cancer stem cells(CSC) subpopulations with different functions within HCC. There is a dynamic interconversion among different CSCs, and between CSC and non-CSCs. Because of that, CSC-state is currently defined as a description of a highly adaptable and dynamic intrinsic property of tumor cells, instead of a static subpopulation of a tumor. Altered conditions could trigger the gain of stemness, some of them include: EMT-MET, epigenetics, microenvironment and selective stimulus such as chemotherapy. This CSC heterogeneity and dynamism makes them out reach from therapeutic protocols directed to a single target. A further avenue of research in this line will be to uncover mechanisms that trigger this interconversion of cell populations within tumors and target it. 展开更多
关键词 Cancer stem cell Liver progenitor cell Liver stem progenitor cell STEMNESS PLASTICITY Cancer cell of origin Cancer stem cells subpopulations
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Applications of single cell RNA sequencing to research of stem cells 被引量:4
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作者 Xiao Zhang Lei Liu 《World Journal of Stem Cells》 SCIE 2019年第10期722-728,共7页
Stem cells(SCs)with their self-renewal and pluripotent differentiation potential,show great promise for therapeutic applications to some refractory diseases such as stroke,Parkinsonism,myocardial infarction,and diabet... Stem cells(SCs)with their self-renewal and pluripotent differentiation potential,show great promise for therapeutic applications to some refractory diseases such as stroke,Parkinsonism,myocardial infarction,and diabetes.Furthermore,as seed cells in tissue engineering,SCs have been applied widely to tissue and organ regeneration.However,previous studies have shown that SCs are heterogeneous and consist of many cell subpopulations.Owing to this heterogeneity of cell states,gene expression is highly diverse between cells even within a single tissue,making precise identification and analysis of biological properties difficult,which hinders their further research and applications.Therefore,a defined understanding of the heterogeneity is a key to research of SCs.Traditional ensemble-based sequencing approaches,such as microarrays,reflect an average of expression levels across a large population,which overlook unique biological behaviors of individual cells,conceal cell-to-cell variations,and cannot understand the heterogeneity of SCs radically.The development of high throughput single cell RNA sequencing(scRNA-seq)has provided a new research tool in biology,ranging from identification of novel cell types and exploration of cell markers to the analysis of gene expression and predicating developmental trajectories.scRNA-seq has profoundly changed our understanding of a series of biological phenomena.Currently,it has been used in research of SCs in many fields,particularly for the research of heterogeneity and cell subpopulations in early embryonic development.In this review,we focus on the scRNA-seq technique and its applications to research of SCs. 展开更多
关键词 STEM cells HETEROGENEITY Single CELL RNA SEQUENCING DEVELOPMENTAL trajectories CELL subpopulations
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EXPERIMENTAL AND CLINICAL STUDIES ON THE REGULATION OF ACUPUNCTURE ON IMMUNOLOGICAL FUNCTION 被引量:1
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作者 Tahmazov Rafig Faig oglyM. Mansouz 113-4, Baku 370004, Azerbaijan 《World Journal of Acupuncture-Moxibustion》 1994年第3期54-56,60,共4页
The regulation of acupuncture on the immunological function has been studied inlaboratory and clinic. The results showed that stimulating the biological active point (or acupoint)with electroacupuncture could inhibit ... The regulation of acupuncture on the immunological function has been studied inlaboratory and clinic. The results showed that stimulating the biological active point (or acupoint)with electroacupuncture could inhibit the growth of tumor in experimental rats and prolongate the life-span of rats bearing tumor; and that electro-acupuncture had a good effect on the immunoregulatingsubpopulations of lymphocyte of patients with cancer. 展开更多
关键词 BIOLOGICAL active POINT ELECTRO-ACUPUNCTURE subpopulations of LYMPHOCYTE Immunof unction
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Decrease of Peripheral Blood CD8+/CD28- Suppressor T Cell Followed by Dentritic Cells Immunomodulation among Metastatic Breast Cancer Patients 被引量:1
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作者 Guo-hong Song Jun Ren Lijun Di Jing Yu Jie Zhang Bin Shao Jun Jia Wei Sun 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2010年第4期310-315,共6页
Objective: To explore the effects of dentritic cells on the peripheral blood lymphocyte subpopulations of metastatic breast cancer patients treated with chemotherapy. Methods: The current study involved 44 metastatic ... Objective: To explore the effects of dentritic cells on the peripheral blood lymphocyte subpopulations of metastatic breast cancer patients treated with chemotherapy. Methods: The current study involved 44 metastatic breast cancer patients treated with docetaxel-based chemotherapy. Among them, 25 cases were treated with dendritic cells derived from CD34+ hematopoietic stem cells enriched autologous peripheral mononuclear cells after chemotherapy, and 19 cases received chemotherapy alone. Peripheral blood samples were collected from each patient before and after treatment, and lymphocyte subpopulations including CD3+, CD3+/CD4+, CD3+/CD8+, CD3-/CD16+56+, CD3+/CD16+56+, CD4+/CD25+, CD8+/CD28-, CD8+/CD28+, CD4/CD8, DC1, DC2 and DC1/DC2 were analysed by a 3-color flow cytometric analysis. Results: The two treatment groups were well matched with regard to demographic and baseline disease characteristics. Comparing the changes of lymphocyte subpopulations between the two groups, it showed that the difference of the change of CD8+/CD28-lymphocyte had statistic significance. The percentage of CD8+/CD28-lymphocyte was lower in the chemotherapy+DC group, but higher in the chemotherapy-alone group. Conclusion: As CD8+/CD28-lymphocyte represent a kind of suppressive T lymphocyte, we conclude that dentritic cell therapy can relieve immunosuppression to some extent. 展开更多
关键词 变形乳癌 Dentritic 房间 淋巴细胞 subpopulations 规章的 T 房间
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Migration routes,behavior and protection status of Eurasian Spoonbills(Platalea leucorodia)wintering in China 被引量:1
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作者 Jire Xi Xueqin Deng +9 位作者 Gerelt Zhao Nyambayar Batbayar Iderbat Damba Qingshan Zhao Shoubin Cui Chao Jiang Yiwen Chen Yat-tung Yu Lei Cao Anthony David Fox 《Avian Research》 SCIE CSCD 2021年第4期452-468,共17页
Background:The Eurasian Spoonbill(Platalea leucorodia)occurs throughout Eurasia and North and sub-Saharan Africa,with three recognized subspecies and six geographically distributed populations.However,in China,we knew... Background:The Eurasian Spoonbill(Platalea leucorodia)occurs throughout Eurasia and North and sub-Saharan Africa,with three recognized subspecies and six geographically distributed populations.However,in China,we knew almost nothing about migration routes,habitat use and effectiveness of current site protection measures for this species.Methods:We deployed Global Positioning System/Global System for Mobile Communications(GPS/GSM)satellite trackers on 29 Eurasian Spoonbills captured in summer in Mongolia and northeastern China,to obtain complete migration routes data from 10 individuals from 19 complete migration episodes.Results:Tracking data showed no geographical overlap during the annual cycle in Eurasian Spoonbills marked in the two main summering areas.Birds marked in the Naoli River Basin in Heilongjiang Province,China,wintered along the Jiangsu coastline in China,while Eurasian Spoonbills from two discrete summering areas(in Inner and western Mon-golia)overwintered inland in the Yangtze River floodplain of China.Excluding the single Inner Mongolian bird,spring migration was significantly faster than autumn migration in the other two groups of birds.Eurasian Spoonbills mainly used water,wetland and grassland habitats in summer,but almost exclusively water in winter.Lack of protection of staging sites used by all the birds in spring and poor levels of protection throughout the annual cycle for western Mongolian birds(5-22%)gives considerable cause for concern,although sites used in other time by East Mongolian and Naoli River birds in the rest of their annual life cycle enjoyed good levels of protection(49-95%).Conclusions:These results revealed previously unknown relationships between summering and wintering areas,migration routes and stopover sites for Eurasian Spoonbills wintering in China,suggesting the existence of discrete biogeographical population units.They also identified winter habitat use of Eurasian Spoonbills in China,confirming open water habitats as being critical throughout the annual cycle,although based on small sample size,gaps in cur-rent site safeguard networks for these populations. 展开更多
关键词 Biogeographical subpopulations GPS/GSM loggers Habitat use Migration routes Open water habitats Site safeguard
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SOME OF THE IMMUNOLOGICAL PARAMETERS OF GASTRIC CARCINOMA
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作者 陆汉明 金礼春 《Medical Bulletin of Shanghai Jiaotong University》 CAS 1990年第1期14-21,共8页
In patients with gastric carcinoma the determination of the activities of some cellular and humoral factors may reflect the immunological state of the patient, the stage and extent of the disease, and help estimate th... In patients with gastric carcinoma the determination of the activities of some cellular and humoral factors may reflect the immunological state of the patient, the stage and extent of the disease, and help estimate the effects of treatment and prognosis. Moreover, experimental studies and preliminary clinical trials of some of these cellular elements and humoral factors in the treatment of gastric carcinoma have opened a new field of adoptive immunotherapy. 展开更多
关键词 gastric carcinoma T lymphocyte subpopulations K CELL NK CELL LAK CELL INTERLEUKIN-2 SECRETORY IgA oncoantigens
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Antiretroviral naive and treated patients: Discrepancies of B cell subsets during the natural course of human immunodeficiency virus type 1 infection
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作者 Olga Tsachouridou Lemonia Skoura +7 位作者 Pantelis Zebekakis Apostolia Margariti Adamantini Georgiou Dimitrios Bougiouklis Dimitrios Pilalas Antonios Galanos Michael Daniilidis Symeon Metallidis 《World Journal of Virology》 2016年第4期155-160,共6页
AIM To evaluate alterations of memory B cell subpopulations during a 48-wk period in human immunodeficiency virus type 1(HIV-1) patients. METHODS Forty-one antiretroviral na?ve and 41 treated HIV-1 patients matched fo... AIM To evaluate alterations of memory B cell subpopulations during a 48-wk period in human immunodeficiency virus type 1(HIV-1) patients. METHODS Forty-one antiretroviral na?ve and 41 treated HIV-1 patients matched for age and duration of HIV infection were recruited. All clinical, epidemiological and laboratory data were recorded or measured. The different B cell subsets were characterized according to their surface markers: Total B cells(CD19^+), memory B cells(CD19^+CD27^+, BMCs), resting BMCs(CD19^+CD27^+CD21^(high), RM), exhausted BMCs(CD19^+CD21^(low)CD27-, EM), IgM memory B(CD19^+CD27^+IgM^(high)), isotype-switched BMCs(CD19^+CD27^+IgM-, ITS) and activated BMCs(CD19^+CD21^(low+)CD27^+, AM) at baseline on week 4 and week 48.RESULTS Mean counts of BMCs were higher in treated patients. There was a marginal upward trend of IgM memory B cell proportions which differed significantly in the treated group(overall trend, P = 0.004). ITS BMC increased over time significantly in all patients. Naive patients had of ^(low)er levels of EM B cells compared to treated, with a downward trend, irrespectively of ^(high)ly active antiretroviral therapy(HAART) intake. Severe impairment of EM B cells was recorded to both treated(P = 0.024) and naive(P = 0.023) and patients. Higher proportions of RM cells were noted in HAART group, which differed significantly on week 4^(th)(P = 0.017) and 48th(P = 0.03). Higher levels of AM were preserved in HAART naive group during the whole study period(week 4: P = 0.018 and 48: P = 0.035). HIV-RNA viremia strongly correlated with AM B cells(r = 0.54, P = 0.01) and moderately with RM cells(r =-0.45, P = 0.026) at baseline.CONCLUSION HIV disrupts memory B cell subpopulations leading to impaired immunologic memory over time. BMC, RM, EM and ITS BMC were higher in patients under HAART. Activated BMCs(AM) were higher in patients without HAART. Viremia correlated with AM and RM. Significant depletion was recorded in EM B cells irrespectively of HAART intake. Perturbations in BMC-populations are not fully restored by antiretrovirals. 展开更多
关键词 B cell subpopulations Time-trend Memory cells Human immunodeficiency virus INFECTION Highly active ANTIRETROVIRAL therapy
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Adipose-derived mesenchymal stromal/stem cells: An update on their phenotype in vivo and in vitro 被引量:16
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作者 Patrick C Baer 《World Journal of Stem Cells》 SCIE CAS 2014年第3期256-265,共10页
Adipose tissue is a rich, ubiquitous and easily acces-sible source for multipotent stromal/stem cells and has, therefore, several advantages compared to other sourc-es of mesenchymal stromal/stem cells. Several studie... Adipose tissue is a rich, ubiquitous and easily acces-sible source for multipotent stromal/stem cells and has, therefore, several advantages compared to other sourc-es of mesenchymal stromal/stem cells. Several studies have tried to identify the origin of the stromal/stem cell population within adipose tissue in situ. This is a complicated attempt because no marker has currently been described which unambiguously identifies native adipose-derived stromal/stem cells(ASCs). Isolated and cultured ASCs are a non-uniform preparation consisting of several subsets of stem and precursor cells. Cultured ASCs are characterized by their expression of a panel of markers(and the absence of others), whereas their in vitro phenotype is dynamic. Some markers were ex-pressed de novo during culture, the expression of some markers is lost. For a long time, CD34 expression was solely used to characterize haematopoietic stem and progenitor cells, but now it has become evident that it is also a potential marker to identify an ASC subpopula-tion in situ and after a short culture time. Nevertheless, long-term cultured ASCs do not express CD34, perhaps due to the artificial environment. This review gives an update of the recently published data on the origin and phenotype of ASCs both in vivo and in vitro. In addition, the composition of ASCs(or their subpopula-tions) seems to vary between different laboratories andpreparations. This heterogeneity of ASC preparationsmay result from different reasons. One of the main problems in comparing results from different laborato-ries is the lack of a standardized isolation and culture protocol for ASCs. Since many aspects of ASCs, suchas the differential potential or the current use in clinical trials, are fully described in other recent reviews, this review further updates the more basic research issues concerning ASCs' subpopulations, heterogeneity andculture standardization. 展开更多
关键词 Adipose-derived stromal/stem cells Adi-pose tissue Subpopulation Heterogeneity PHENOTYPE CD34 MESENCHYMAL STEM cells
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