Grain appearance quality traits,measured as grain length(GL),grain width(GW),length to width ratio(LWR),grain thickness(GT) and the percentage of grain with chalkiness(PGWC),as well as 1 000-grain weight(TGW),are very...Grain appearance quality traits,measured as grain length(GL),grain width(GW),length to width ratio(LWR),grain thickness(GT) and the percentage of grain with chalkiness(PGWC),as well as 1 000-grain weight(TGW),are very important factors that contribute to rice grain quality and yield.To detect quantitative trait loci(QTLs) affecting these traits,we developed a set of recombinant inbred lines(RILs) derived from Gang46B(G46B) and K1075,a G46 B introgression line with lower PGWC.Based on a linkage map containing 33 simple sequence repeat(SSR) markers,a total of 15 additive QTLs governing six measured traits were identified on 4 chromosomes across two environments.Of these,the five major QTLs which controlled GW,LWR,GT,PGWC,and TGW,each explaining up to 44.30,55.29,62.30,30.94,and 28.78%of the variation,respectively,were found in the same interval of RM18004-RM18068 on chromosome 5.The G46 B alleles contributed to the increase in GW,GT and PGWC at all loci,as well as the increase in TGW at its major QTL locus.Significant interactions between additive QTL and the environment were found at most loci,in which the largest,accounting for15.06%of variation,was observed between qPGWC-5 and the environment.A total of 15 epistasis QTLs were detected for all the traits,and GL,GW and PGWC had significant epistasis QTLs based on environment interactions with minor effects.These results are valuable for future map-based cloning of the QTLs and the collaborative improvement of G46 B in grain appearance quality and yield.展开更多
Appearance and cooked rice elongation are key quality traits of rice. Although some QTL for these traits have been identified, understanding of the genetic relationship between them remains limited. In the present stu...Appearance and cooked rice elongation are key quality traits of rice. Although some QTL for these traits have been identified, understanding of the genetic relationship between them remains limited. In the present study, large phenotypic variation was observed in 760 accessions from the 3 K Rice Genomes Project for both appearance quality and cooked rice elongation. Most component traits of appearance quality and cooked rice elongation showed significant pairwise correlations, but a low correlation was found between appearance quality and cooked rice elongation. A genome-wide association study identified 74 QTL distributed on all 12 chromosomes for grain length, grain width, length to width ratio, degree of endosperm with chalkiness, rice elongation difference, and elongation index. Thirteen regions containing QTL stably expressed in multiple environments and/or exerting pleiotropic effects on multiple traits were detected. By gene-based association analysis and haplotype analysis, 46 candidate genes, including five cloned genes, and 49 favorable alleles were identified for these 13 QTL. The effect of the candidate gene Wx on rice elongation difference was validated by a transgenic strategy. These results shed light on the genetic bases of appearance quality and cooked rice elongation and provide gene resources for improving rice quality by molecular breeding.展开更多
Development of hybrid rice with high yield and grain quality is a goal of rice breeding.To investigate the genetic mechanism of heterosis for rice milling and appearance quality in indica/xian rice,QTL mapping was con...Development of hybrid rice with high yield and grain quality is a goal of rice breeding.To investigate the genetic mechanism of heterosis for rice milling and appearance quality in indica/xian rice,QTL mapping was conducted using 1061 recombinant inbred lines(RILs)derived from a cross of the xian rice cultivars Quan 9311B(Q9311B)and Wu-shan-si-miao(WSSM),and a backcross F_(1)(BC_(1)F_(1)) population developed by crossing the RILs with Quan 9311A(Q9311A),combined with phenotyping in two environments.The F_(1) hybrid(Q9311A×WSSM)showed various degrees of heterosis for milling and appearance quality.A total of 142 main-effect QTL(M-QTL)and 407 pairs of epistatic QTL(E-QTL)were identified for five milling and appearance quality traits and grain yield per plant(GYP)in the RIL,BC_(1)F_(1) and mid-parental heterosis(H_(MP)) populations.Differential detection of QTL in three populations revealed that most additive loci detected in the RILs did not show heterotic effects,but some of them did contribute to BC_(1)F_(1) trait performance.Unlike heterosis of GYP,single-locus overdominance and epistasis were the main contributors to heterosis for milling and appearance quality.Epistasis contributed more to the heterosis for milling quality than to that for appearance quality.Three(four)QTL regions harboring opposite(consistent)directions of favorable allele effects for GYP and grain quality were identified,indicating the presence of partial genetic overlaps between GYP and grain quality.Three strategies are proposed to develop hybrid rice with high yield and good grain quality:1)pyramiding favorable alleles with consistent directions of gene effects for GYP and grain quality at the M-QTL on different chromosomes;2)introgressing favorable alleles for GYP and grain quality into the parents and then pyramiding and fixing these additive effects in hybrids;and 3)pyramiding overdominant and dominant loci and minimizing or eliminating underdominant loci from the parents.展开更多
To clarify the optimal water management in large-scale fields under high temperatures at the ripening period,effective water managements during this period for improvement of yield,appearance quality and palatability ...To clarify the optimal water management in large-scale fields under high temperatures at the ripening period,effective water managements during this period for improvement of yield,appearance quality and palatability were investigated.Compared with intermittent irrigation and flooded irrigation,the soil temperature with saturated irrigation remained low throughout the day,and the decrease rate of the bleeding rate of hills was the lowest.These results suggested that the saturated irrigation maintained root activity.For the three irrigation types,the number of spikelets per m2 and 1000-grain weight were similar,however,saturated irrigation resulted in significantly higher rice yield due to improvement in the percentage of ripened grains.The saturated irrigation produced a high percentage of perfect rice grains and thicker brown rice grain,furthermore,the palatability of cooked rice was excellent because protein content and hardness/adhesion ratio were both low.Thus,under high-temperature ripening conditions,soil temperature was lowered and root activity was maintained when applying saturated irrigation after heading time.The results indicated that saturated irrigation is an effective countermeasure against high-temperature ripening damage.展开更多
Applying iodine fertilizers to cultivate iodine-rich crops for daily intake is an effective approach for iodine supplementation,especially for aromatic rice.Field experiments were conducted during the early growing se...Applying iodine fertilizers to cultivate iodine-rich crops for daily intake is an effective approach for iodine supplementation,especially for aromatic rice.Field experiments were conducted during the early growing seasons of 2021 and 2022 to evaluate the impacts of foliar application of iodine fertilizer on aromatic rice and to explore the optimal iodine fertilizer concentration.At the full heading stage,six different concentrations of sodium iodide solutions of 0%(CK),0.010%(T1),0.025%(T2),0.050%(T3),0.075%(T4),and 0.100%(T5)were applied to indica aromatic rice cultivars Meixiangzhan 2 and Xiangyaxiangzhan.The results showed that sodium iodide treatments significantly increased the iodine and sodium contents in both leaves and grains.Compared with the CK,the T1 and T2 treatments increased the 2-acetyl-1-pyrroline(2-AP)content in mature grains by 8.41%-101.66%and 13.58%-74.60%,respectively.Improvements in the contents of 1-pyrroline-5-carboxylic acid,proline,1-pyrroline,and methylglyoxal,as well as the activity of proline dehydrogenase were also detected.Additionally,sodium iodide treatments remarkably decreased the chalky grain rate,chalkiness area,and chalkiness degree of aromatic rice,with the T2 treatment exhibiting a 17.79%-47.42%decrease in chalkiness degree compared with the CK.Meanwhile,T1 and T2 treatments showed beneficial impacts on chlorophyll content,photosynthetic characteristics,and yield components,while T3,T4,and T5 treatments exhibited adverse effects on leaf and grain yields.The linear discriminant analysis revealed significant differences between treatments.The correlation analysis and piecewise structural equation modeling showed that the iodine and sodium influenced the photosynthetic characteristics and chlorophyll content of the leaves,thereby regulating the 2-AP biosynthesis and yield components,ultimately affecting the 2-AP content and yield.Overall,this study suggests that foliar application of 0.025%sodium iodide is an effective method to enrich the iodine content in rice grains,improve the grain aroma and appearance quality of aromatic rice,without detrimental effects on grain yield.展开更多
High temperature(HT)accompanied with strong light(SL)often occurs in early indica rice production during grout filling stage in Southern China,which accelerates grain ripening.Two indica rice cultivars with different ...High temperature(HT)accompanied with strong light(SL)often occurs in early indica rice production during grout filling stage in Southern China,which accelerates grain ripening.Two indica rice cultivars with different amylose content(Zhongjiazao17,ZJZ17,high amylose content;Xiangzaoxian45,XZX45,low amylose content)were grown under control(CK),HT,and HT+SL conditions during grout filling to determine the effects on grain yield and quality of rice.The results showed that compared with CK,HT and HT+SL significantly reduced the 1000-grain weight and filled grain rate whether in high or low amylose content early indica rice cultivars during grout filling,resulting in a significantly lower grain yield.Meanwhile,HT and HT+SL significantly decreased the milled rice rate,brown rice rate and head rice rate,whereas significantly increased chalky rate and chalky degree;and breakdown decreased and setback,pasting temperature increased in the cultivars,leading to the poor processing,appearance and cooking and eating quality of early indica rice cultivars.Compared with HT,the yield of ZJZ17 was significantly decreased under HT+SL,due to the lower 1000-grain weight.However,the effect of HT+SL on rice quality varied in the cultivars.In general,the yield and rice quality of ZJZ17 were relatively poor under HT+SL.Our results suggested that HT and HT+SL during grout filling had significant damage to the yield and quality of early indica rice cultivars,especially HT+SL,while the high amylose cultivar ZJZ17 showed a higher negative effect under HT+SL.展开更多
Appearance and taste are important factors in rice(Oryza sativa) grain quality. Here, we investigated the taste scores and related eating-quality traits of533 diverse cultivars to assess the relationships between—and...Appearance and taste are important factors in rice(Oryza sativa) grain quality. Here, we investigated the taste scores and related eating-quality traits of533 diverse cultivars to assess the relationships between—and genetic basis of—rice taste and eating-quality. A genome-wide association study highlighted the Wx gene as the major factor underlying variation in taste and eating quality. Notably, a novel waxy(Wx) allele, Wx^(la), which combined two mutations from Wx^(b) and Wx^(in), exhibited a unique phenotype. Reduced GBSSI activity conferred Wx^(la) rice with both a transparent appearance and good eating quality. Haplotype analysis revealed that Wx^(la) was derived from intragenic recombination. In fact,the recombination rate at the Wx locus was estimated to be 3.34 kb/c M, which was about 75-fold higher than the genome-wide mean, indicating that intragenic recombination is a major force driving diversity at the Wx locus. Based on our results, we propose a new network for Wx evolution, noting that new Wx alleles could easily be generated by crossing genotypes with different Wx alleles. This study thus provides insights into the evolution of the Wx locus and facilitates molecular breeding for quality in rice.展开更多
基金supported by a grant from the National High-Tech R&D Program of China (2014AA10A603, 2014AA10A604)a grant from the Youth Foundation in Sichuan, China (2011JTD0022)+1 种基金the special fund for China Agricultural Research System (CARS-01-08)the Provincial Specialized Funds for Innovation Ability Promotion in Sichuan, China (2013GXJS005)
文摘Grain appearance quality traits,measured as grain length(GL),grain width(GW),length to width ratio(LWR),grain thickness(GT) and the percentage of grain with chalkiness(PGWC),as well as 1 000-grain weight(TGW),are very important factors that contribute to rice grain quality and yield.To detect quantitative trait loci(QTLs) affecting these traits,we developed a set of recombinant inbred lines(RILs) derived from Gang46B(G46B) and K1075,a G46 B introgression line with lower PGWC.Based on a linkage map containing 33 simple sequence repeat(SSR) markers,a total of 15 additive QTLs governing six measured traits were identified on 4 chromosomes across two environments.Of these,the five major QTLs which controlled GW,LWR,GT,PGWC,and TGW,each explaining up to 44.30,55.29,62.30,30.94,and 28.78%of the variation,respectively,were found in the same interval of RM18004-RM18068 on chromosome 5.The G46 B alleles contributed to the increase in GW,GT and PGWC at all loci,as well as the increase in TGW at its major QTL locus.Significant interactions between additive QTL and the environment were found at most loci,in which the largest,accounting for15.06%of variation,was observed between qPGWC-5 and the environment.A total of 15 epistasis QTLs were detected for all the traits,and GL,GW and PGWC had significant epistasis QTLs based on environment interactions with minor effects.These results are valuable for future map-based cloning of the QTLs and the collaborative improvement of G46 B in grain appearance quality and yield.
基金funded by the National Key Research and Development Program of China (2016YFD0100301)Project for Cultivating New Transgenic Varieties (2016ZX08009003-004)+2 种基金the Agricultural Science and Technology Innovation Program and the Cooperation and Innovation Mission (CAAS-ZDXT202001)Open Fund of Hubei Collaborative Innovation Center for Grain Industry (HCICGI2020-06)the National Natural Science Foundation of China (U19A2025 and 31870229)。
文摘Appearance and cooked rice elongation are key quality traits of rice. Although some QTL for these traits have been identified, understanding of the genetic relationship between them remains limited. In the present study, large phenotypic variation was observed in 760 accessions from the 3 K Rice Genomes Project for both appearance quality and cooked rice elongation. Most component traits of appearance quality and cooked rice elongation showed significant pairwise correlations, but a low correlation was found between appearance quality and cooked rice elongation. A genome-wide association study identified 74 QTL distributed on all 12 chromosomes for grain length, grain width, length to width ratio, degree of endosperm with chalkiness, rice elongation difference, and elongation index. Thirteen regions containing QTL stably expressed in multiple environments and/or exerting pleiotropic effects on multiple traits were detected. By gene-based association analysis and haplotype analysis, 46 candidate genes, including five cloned genes, and 49 favorable alleles were identified for these 13 QTL. The effect of the candidate gene Wx on rice elongation difference was validated by a transgenic strategy. These results shed light on the genetic bases of appearance quality and cooked rice elongation and provide gene resources for improving rice quality by molecular breeding.
基金funded by the Key Research and Development Project of Hainan Province(ZDYF2021XDNY128)the Hainan Yazhou Bay Seed Lab Project(B21HJ0216)+1 种基金the Agricultural Science and Technology Innovation Programthe Cooperation and Innovation Mission(CAAS-ZDXT202001)。
文摘Development of hybrid rice with high yield and grain quality is a goal of rice breeding.To investigate the genetic mechanism of heterosis for rice milling and appearance quality in indica/xian rice,QTL mapping was conducted using 1061 recombinant inbred lines(RILs)derived from a cross of the xian rice cultivars Quan 9311B(Q9311B)and Wu-shan-si-miao(WSSM),and a backcross F_(1)(BC_(1)F_(1)) population developed by crossing the RILs with Quan 9311A(Q9311A),combined with phenotyping in two environments.The F_(1) hybrid(Q9311A×WSSM)showed various degrees of heterosis for milling and appearance quality.A total of 142 main-effect QTL(M-QTL)and 407 pairs of epistatic QTL(E-QTL)were identified for five milling and appearance quality traits and grain yield per plant(GYP)in the RIL,BC_(1)F_(1) and mid-parental heterosis(H_(MP)) populations.Differential detection of QTL in three populations revealed that most additive loci detected in the RILs did not show heterotic effects,but some of them did contribute to BC_(1)F_(1) trait performance.Unlike heterosis of GYP,single-locus overdominance and epistasis were the main contributors to heterosis for milling and appearance quality.Epistasis contributed more to the heterosis for milling quality than to that for appearance quality.Three(four)QTL regions harboring opposite(consistent)directions of favorable allele effects for GYP and grain quality were identified,indicating the presence of partial genetic overlaps between GYP and grain quality.Three strategies are proposed to develop hybrid rice with high yield and good grain quality:1)pyramiding favorable alleles with consistent directions of gene effects for GYP and grain quality at the M-QTL on different chromosomes;2)introgressing favorable alleles for GYP and grain quality into the parents and then pyramiding and fixing these additive effects in hybrids;and 3)pyramiding overdominant and dominant loci and minimizing or eliminating underdominant loci from the parents.
基金supported by the grants from the Project of the National Agriculture and Food Research Organization Bio-oriented Technology Research Advancement Institution in Japan(the Special Scheme to Create Dynamism in Agriculture,Forestry and Fisheries through Deploying Highly Advanced Technology)(Grant No.shoNavi1000)。
文摘To clarify the optimal water management in large-scale fields under high temperatures at the ripening period,effective water managements during this period for improvement of yield,appearance quality and palatability were investigated.Compared with intermittent irrigation and flooded irrigation,the soil temperature with saturated irrigation remained low throughout the day,and the decrease rate of the bleeding rate of hills was the lowest.These results suggested that the saturated irrigation maintained root activity.For the three irrigation types,the number of spikelets per m2 and 1000-grain weight were similar,however,saturated irrigation resulted in significantly higher rice yield due to improvement in the percentage of ripened grains.The saturated irrigation produced a high percentage of perfect rice grains and thicker brown rice grain,furthermore,the palatability of cooked rice was excellent because protein content and hardness/adhesion ratio were both low.Thus,under high-temperature ripening conditions,soil temperature was lowered and root activity was maintained when applying saturated irrigation after heading time.The results indicated that saturated irrigation is an effective countermeasure against high-temperature ripening damage.
基金supported by the National Natural Science Foundation of China(Grant No.31971843)the Technology System of Modern Agricultural Industry in Guangdong Province,China(Grant No.2020KJ105)+1 种基金the Guangzhou Science and Technology Project,Guangdong Province,China(Grant No.202103000075)the Special Rural Revitalization Funds of Guangdong Province,China(Grant No.2021KJ382)。
文摘Applying iodine fertilizers to cultivate iodine-rich crops for daily intake is an effective approach for iodine supplementation,especially for aromatic rice.Field experiments were conducted during the early growing seasons of 2021 and 2022 to evaluate the impacts of foliar application of iodine fertilizer on aromatic rice and to explore the optimal iodine fertilizer concentration.At the full heading stage,six different concentrations of sodium iodide solutions of 0%(CK),0.010%(T1),0.025%(T2),0.050%(T3),0.075%(T4),and 0.100%(T5)were applied to indica aromatic rice cultivars Meixiangzhan 2 and Xiangyaxiangzhan.The results showed that sodium iodide treatments significantly increased the iodine and sodium contents in both leaves and grains.Compared with the CK,the T1 and T2 treatments increased the 2-acetyl-1-pyrroline(2-AP)content in mature grains by 8.41%-101.66%and 13.58%-74.60%,respectively.Improvements in the contents of 1-pyrroline-5-carboxylic acid,proline,1-pyrroline,and methylglyoxal,as well as the activity of proline dehydrogenase were also detected.Additionally,sodium iodide treatments remarkably decreased the chalky grain rate,chalkiness area,and chalkiness degree of aromatic rice,with the T2 treatment exhibiting a 17.79%-47.42%decrease in chalkiness degree compared with the CK.Meanwhile,T1 and T2 treatments showed beneficial impacts on chlorophyll content,photosynthetic characteristics,and yield components,while T3,T4,and T5 treatments exhibited adverse effects on leaf and grain yields.The linear discriminant analysis revealed significant differences between treatments.The correlation analysis and piecewise structural equation modeling showed that the iodine and sodium influenced the photosynthetic characteristics and chlorophyll content of the leaves,thereby regulating the 2-AP biosynthesis and yield components,ultimately affecting the 2-AP content and yield.Overall,this study suggests that foliar application of 0.025%sodium iodide is an effective method to enrich the iodine content in rice grains,improve the grain aroma and appearance quality of aromatic rice,without detrimental effects on grain yield.
基金the National Key Research&Development Project of China(2016YFD0300501)the Key Project of Jiangxi Provincial Natural Science Foundation(20202ACBL215004)the Key Research of&Development Project Jiangxi Province,China(20171BBF60030).
文摘High temperature(HT)accompanied with strong light(SL)often occurs in early indica rice production during grout filling stage in Southern China,which accelerates grain ripening.Two indica rice cultivars with different amylose content(Zhongjiazao17,ZJZ17,high amylose content;Xiangzaoxian45,XZX45,low amylose content)were grown under control(CK),HT,and HT+SL conditions during grout filling to determine the effects on grain yield and quality of rice.The results showed that compared with CK,HT and HT+SL significantly reduced the 1000-grain weight and filled grain rate whether in high or low amylose content early indica rice cultivars during grout filling,resulting in a significantly lower grain yield.Meanwhile,HT and HT+SL significantly decreased the milled rice rate,brown rice rate and head rice rate,whereas significantly increased chalky rate and chalky degree;and breakdown decreased and setback,pasting temperature increased in the cultivars,leading to the poor processing,appearance and cooking and eating quality of early indica rice cultivars.Compared with HT,the yield of ZJZ17 was significantly decreased under HT+SL,due to the lower 1000-grain weight.However,the effect of HT+SL on rice quality varied in the cultivars.In general,the yield and rice quality of ZJZ17 were relatively poor under HT+SL.Our results suggested that HT and HT+SL during grout filling had significant damage to the yield and quality of early indica rice cultivars,especially HT+SL,while the high amylose cultivar ZJZ17 showed a higher negative effect under HT+SL.
基金This work was supported by grants from the National Program on R&D of Transgenic Plants(2016ZX08009004)the Natural Science Foundation of China(91935303)+2 种基金the Ministry of Science and Technology(Grants 2016YFD0100501)the earmarked fund for the China Agriculture Research System(CARS-01-03)the Postdoctoral Science Foundation of China(2017M622477)。
文摘Appearance and taste are important factors in rice(Oryza sativa) grain quality. Here, we investigated the taste scores and related eating-quality traits of533 diverse cultivars to assess the relationships between—and genetic basis of—rice taste and eating-quality. A genome-wide association study highlighted the Wx gene as the major factor underlying variation in taste and eating quality. Notably, a novel waxy(Wx) allele, Wx^(la), which combined two mutations from Wx^(b) and Wx^(in), exhibited a unique phenotype. Reduced GBSSI activity conferred Wx^(la) rice with both a transparent appearance and good eating quality. Haplotype analysis revealed that Wx^(la) was derived from intragenic recombination. In fact,the recombination rate at the Wx locus was estimated to be 3.34 kb/c M, which was about 75-fold higher than the genome-wide mean, indicating that intragenic recombination is a major force driving diversity at the Wx locus. Based on our results, we propose a new network for Wx evolution, noting that new Wx alleles could easily be generated by crossing genotypes with different Wx alleles. This study thus provides insights into the evolution of the Wx locus and facilitates molecular breeding for quality in rice.
