BACKGROUND A previous study compared vortexing and Maki techniques for the diagnosis of catheter-related bloodstream infection(CRBSI),and concluded that vortexing was not superior to Maki method.AIM To determine wheth...BACKGROUND A previous study compared vortexing and Maki techniques for the diagnosis of catheter-related bloodstream infection(CRBSI),and concluded that vortexing was not superior to Maki method.AIM To determine whether the combined use of vortexing and Maki techniques provides profitability versus the Maki technique for the diagnosis of catheter tip colonization(CTC)and CRBSI.METHODS Observational and prospective study carried out in an Intensive Care Unit.Patients with suspected catheter-related infection(CRI)and with one central venous catheter for at least 7 days were included.The area under the curve(AUC)of the Maki technique,the vortexing technique and the combination of both techniques for the diagnosis of CTC and CRBSI were compared.RESULTS We included 136 episodes of suspected CRI.We found 21 cases of CTC of which 10 were also CRBSI cases.Of the 21 CTC episodes,18(85.7%)were diagnosed by Maki technique and vortexing technique,3(14.3%)only by the technique of Maki,and none only by technique of vortexing.Of the 10 CRBSI episodes,9(90.0%)were diagnosed by the techniques of Maki and vortexing,1(10.0%)was diagnosed only by the technique of Maki,and none only by the technique of vortexing.We no found differences in the comparison of AUC between the technique of Maki and the combination of Maki and vortexing techniques for the diagnosis of CTC(P=0.99)and CRBSI(P=0.99).CONCLUSION The novel finding of our study was that the combined use of vortexing and Maki techniques did not provide profitability to the technique of Maki alone to CRBSI diagnosis of.展开更多
BACKGROUND The rising prevalence of carbapenem-resistant Acinetobacter baumannii(CRAB)in neonatal intensive care units(NICUs)represents an escalating challenge in healthcare settings,particularly in managing hospital-...BACKGROUND The rising prevalence of carbapenem-resistant Acinetobacter baumannii(CRAB)in neonatal intensive care units(NICUs)represents an escalating challenge in healthcare settings,particularly in managing hospital-acquired infections(HAIs).Studies across various World Health Organization regions have documented a significant incidence of CRAB-related HAIs,with rates as high as 41.7 cases per 1000 patients in ICUs,accounting for 13.6%of all HAIs.These infections pose a doubled mortality risk compared to infections with carbapenem-susceptible Acinetobacter baumannii.A particularly concerning aspect of CRAB colonization is its asymptomatic nature,enabling its transmission through healthcare workers(HCWs)or the NICU environment to vulnerable neonates with developing immune systems.AIM To explore the prevalence of CRAB colonization in NICUs,focusing on neonates,healthcare workers,and the environmental samples,to enhance epidemiological understanding and inform targeted interventions.METHODS We conducted according to PRISMA 2020 checklist guidelines,a comprehensive literature search across multiple databases including MEDLINE(Ovid),EMBASE(Ovid),Global Health(Ovid),Web of Science,and Global Index Me-dicus.Studies were selected based on predetermined criteria,primarily involving neonates,HCWs,and environmental swabs,using culture or molecular methods to detect CRAB colonization.We excluded studies that did not specifically focus on NICUs,were duplicates,or lacked necessary data.The study selection and quality assessment were conducted independently by two reviewers.Data extraction involved collecting comprehensive details about each study.Our statistical analysis used a random-effects model to calculate the pooled prevalence and confidence intervals,stratifying results by regional location.We assessed study heterogeneity using Cochran's Q statistic and I²statistic,with regression tests employed to evaluate potential publication bias.RESULTS We analyzed 737 records from five databases,ultimately including 13 studies from ten countries.For neonates,the pooled prevalence was 4.8%(95%CI:1.1%to 10.5%)with the highest rates observed in South-East Asia(10.5%;95%CI:2.4%to 23.3%).Among HCWs,a single Indian study reported a 3.3%prevalence.Environmental samples showed a prevalence of 2.3%(95%CI:0%to 9.3%),with the highest rates in South-East Asia(10%;95%CI:4.2%to 17.7%).Significant heterogeneity was found across studies,and no publication bias was detected.CONCLUSION This systematic review highlights a significant prevalence of CRAB colonization in neonates across various regions,particularly in South-East Asia,contrasting with lower rates in high-income countries.The study reveals a gap in research on HCWs colonization,with only a single study from India reporting moderate prevalence.Environmental samples indicate moderate levels of CRAB contamination,again higher in South-East Asia.These findings underscore the need for more extensive and focused research on CRAB colonization in NICUs,including exploring the roles of HCWs and the environment in transmission,understanding antimicrobial resistance patterns,and developing effective prevention measures.展开更多
Colonization and development of the gut microbiome are crucial for the growth and health of calves.In this review,we summarized the colonization,beneficial nutrition,immune function of gut microbiota,function of the g...Colonization and development of the gut microbiome are crucial for the growth and health of calves.In this review,we summarized the colonization,beneficial nutrition,immune function of gut microbiota,function of the gut barrier,and the evolution of core microbiota in the gut of calves of different ages.Homeostasis of gut microbiome is beneficial for nutritional and immune system development of calves.Disruption of the gut microbiome leads to digestive diseases in calves,such as diarrhea and intestinal inflammation.Microbiota already exists in the gut of calf fetuses,and the colonization of microbiota continues to change dynamically under the influence of various factors,which include probiotics,diet,age,and genotype.Colonization depends on the interaction between the gut microbiota and the immune system of calves.The abundance and diversity of these commensal microbiota stabilize and play a critical role in the health of calves.展开更多
Sclerotinia stem rot,caused by Sclerotinia sclerotiorum,is a destructive soil-borne disease leading to huge yield loss.We previously reported that Klebsiella variicola FH-1 could degrade atrazine herbicides,and the ve...Sclerotinia stem rot,caused by Sclerotinia sclerotiorum,is a destructive soil-borne disease leading to huge yield loss.We previously reported that Klebsiella variicola FH-1 could degrade atrazine herbicides,and the vegetative growth of atrazine-sensitive crops(i.e.,soybean)was significantly increased in the FH-1-treated soil.Interestingly,we found that FH-1 could promote soybean growth and induce resistance to S.sclerotiorum.In our study,strain FH-1 could grow in a nitrogen-free environment,dissolve inorganic phosphorus and potassium,and produce indoleacetic acid and a siderophore.The results of pot experiments showed that K.variicola FH-1 promoted soybean plant development,substantially improving plant height,fresh weight,and root length,and induced resistance against S.sclerotiorum infection in soybean leaves.The area under the disease progression curve(AUDPC)for treatment with strain FH-1 was significantly lower than the control and was reduced by up to 42.2%within 48 h(P<0.001).Moreover,strain FH-1 rcovered the activities of catalase,superoxide dismutase,peroxidase,phenylalanine ammonia lyase,and polyphenol oxidase,which are involved in plant protection,and reduced malondialdehyde accumulation in the leaves.The mechanism of induction of resistance appeared to be primarily resulted from the enhancement of transcript levels of PR10,PR12,AOS,CHS,and PDF1.2 genes.The colonization of FH-1 on soybean root,determined using CLSM and SEM,revealed that FH-1 colonized soybean root surfaces,root hairs,and exodermis to form biofilms.In summary,K.variicola FH-1 exhibited the biological control potential by inducing resistance in soybean against S.sclerotiorum infection,providing new suggestions for green prevention and control.展开更多
After being ingested and entering the human stomach,Helicobacter pylori(H.pylori)adopts several effective strategies to adhere to and colonize the gastric mucosa and move to different regions of the stomach to obtain ...After being ingested and entering the human stomach,Helicobacter pylori(H.pylori)adopts several effective strategies to adhere to and colonize the gastric mucosa and move to different regions of the stomach to obtain more nutrients and escape from the harsher environments of the stomach,leading to acute infection and chronic gastritis,which is the basis of malignant gastric tumors.The endoscopic manifestations and pathological features of H.pylori infection are diverse and vary with the duration of infection.In this review,we describe the endoscopic manifestations of each stage of H.pylori gastritis and then reveal the potential mechanisms of bacterial intragastric colonization and migration from the perspective of endoscopists to provide direction for future research on the effective therapy and management of H.pylori infection.展开更多
Arbuscular mycorrhizal(AM)fungi can form symbiosis with 90%of the vascular plants and play important roles in ecosystem.To realize the AM fungal colonization at different succession stages in saline-alkali land and sc...Arbuscular mycorrhizal(AM)fungi can form symbiosis with 90%of the vascular plants and play important roles in ecosystem.To realize the AM fungal colonization at different succession stages in saline-alkali land and screen AM fungi species with great functions,roots and soil samples were collected from the three succession stages of Songnen saline-alkali grassland.The soil properties and AM fungal colonization were measured,and the fungus distributed extensively in three stages was annotated by sequencing for AML1/AML2 target,subsequently,maize was selected as the host to verify its colonization.The results showed that the soil properties improved with the succession of saline-alkali grassland.The plants’communities of the three stages could be colonized by AM fungi,and the colonization rate of Leymus chinensis(the third stage)ranged from 66.67%to 100%,Puccinellia tenuiflora(the second stage)ranged from 50%to 80%,while the Suaeda glauca(the first stage)was only 35%–60%.Glomeraceae sp1 was identified as the dominant AM fungi species which occurred frequently in the succession of saline-alkali land with the isolation frequency,relative abundance,and importance value of 100%,18.1%,and 59.1%,respectively.The colonization rate of Glomeraceae sp1 in maize ranged from 80%to 87%and similar mycorrhizal characteristics were detected in the roots of P.tenuiflora,S.glauca,and L.chinensis,indicating that Glomeraceae sp1 colonized the samples in the field.The correlation matrix indicated that colonization rate,colonization intensity,and vesicle abundance were closely related to soil conditions most,and they were related significantly to all the soil properties except cellulase activity.Besides,redundancy analysis(RDA)showed that soil properties drove the changes of AM fungal colonization and sporulation.These results will provide theoretical support for realizing the relationship between AM fungal colonization and soil conditions,and also for the exploration of AM fungi species with great functions.展开更多
Helicobacter pylori(H.pylori)colonizes the stomach of humans and causes chronic infection.The majority of bacteria live in the mucus layer overlying the gastric epithelial cells and only a small proportion of bacteria...Helicobacter pylori(H.pylori)colonizes the stomach of humans and causes chronic infection.The majority of bacteria live in the mucus layer overlying the gastric epithelial cells and only a small proportion of bacteria are found interacting with the epithelial cells.The bacteria living in the gastric mucus may act as a reservoir of infection for the underlying cells which is essential for the development of disease.Colonization of gastric mucus is likely to be key to the establishment of chronic infection.How H.pylori manages to colonise and survive in the hostile environment of the human stomach and avoid removal by mucus flow and killing by gastric acid is the subject of this review.We also discuss how bacterial and host factors may together go some way to explaining the susceptibility to colonization and the outcome of infection in different individuals.H.pylori infection of the gastric mucosa has become a paradigm for chronic infection.Understanding of why H.pylori is such a successful pathogen may help us understand how other bacterial species colonise mucosal surfaces and cause disease.展开更多
Early colonization of intestinal microbiota during the neonatal stage plays an important role on the development of intestinal immune system and nutrients absorption of the host.Compared to the normal birth weight(NBW...Early colonization of intestinal microbiota during the neonatal stage plays an important role on the development of intestinal immune system and nutrients absorption of the host.Compared to the normal birth weight(NBW)piglets,intrauterine growth restricted(IUGR)piglets have a different intestinal microbiota during their early life,which is related to maternal imprinting on intestinal microbial succession during gestation,at birth and via suckling.Imbalanced allocation of limited nutrients among fetuses during gestation could be one of the main causes for impaired intestinal development and microbiota colonization in neonatal IUGR piglets.In this review,we summarized the potential impact of maternal imprinting on the colonization of the intestinal microbiota in IUGR piglets,including maternal undernutrition,imbalanced allocation of nutrients among fetuses,as well as vertical microbial transmission from mother to offspring during gestation and lactation.At the same time,we give information about the current maternal nutritional strategies(mainly breastfeeding,probiotics and prebiotics)to help colonization of the advantageous intestinal microbiota for IUGR piglets.展开更多
Interactions between plants and soil microorganisms can influence the other interactions in which plants participate, including interactions with herbivores. Many fungi, including arbuscular mycorrhizal fungi(AMF), fo...Interactions between plants and soil microorganisms can influence the other interactions in which plants participate, including interactions with herbivores. Many fungi, including arbuscular mycorrhizal fungi(AMF), form symbiotic relationships with the roots they inhabit, and potentially alter defense against pests. The objective of this study was to document the extent of root colonization by AMF on non-flooded rice plants grown under conditions typical of commercial fields. We hypothesized that AMF naturally colonized rice plants in different rice producing field locations. Rice plant samples were collected from areas across the southern United States, including Texas, Mississippi, Arkansas and two research stations in Louisiana. We quantified the amount of AMF colonization in insecticide-free rice plants over three consecutive years(2014–2016). The results revealed natural colonization of AMF in all rice producing areas. In all the three years of survey, rice-AMF associations were the greatest in Arkansas followed by Mississippi and Texas. This research will help draw attention to natural colonization of AMF in rice producing areas that can impact future rice research and production by facilitating agricultural exploitation of the symbiosis.展开更多
Bacillus cereus NJSZ-13,an endophytic bacterium with nematicidal activity,was isolated from stems of healthy Pinus elliottii Engelm.Colonization of P.massoniana Lamb.by endophytic B.cereus was studied using scanning e...Bacillus cereus NJSZ-13,an endophytic bacterium with nematicidal activity,was isolated from stems of healthy Pinus elliottii Engelm.Colonization of P.massoniana Lamb.by endophytic B.cereus was studied using scanning electron microscopy and confocal laser scanning microscopy.After the plasmid p GFP78 containing the green fluorescent protein(GFP)gene was transformed into the NJSZ-13 strain,the NJSZ-13:gfp showed the same nematicidal activity and growth curve as the wild-type strain,and the plasmid p GFP78 was stably maintained in strain NJSZ-13 for at least 96 h of bacterial cultivation on medium without antibiotics.After inoculation into Masson pine roots,colonization of the NJSZ-13:gfp strain in plant roots and stems was visualized using confocal laser scanning and the strain was enumerated in inoculated roots and stems.These results suggest that NJSZ-13:gfp is an efficient colonizer of Masson pine and can transfer vertically from roots to stems.展开更多
The intestinal tract is colonized soon after birth with a variety of ingested environmental and maternal microflora. This process is influenced by many factors including mode of delivery, diet, environment, and the us...The intestinal tract is colonized soon after birth with a variety of ingested environmental and maternal microflora. This process is influenced by many factors including mode of delivery, diet, environment, and the use of antibiotics. Normal intestinal microflora provides protection against infection, ensures tolerance to foods, and contributes to nutrient digestion and energy harvest. In addition, enteral feeding and colonization with the normal commensal flora are necessary for the maintenance of intestinal barrier function and play a vital role in the regulation of intestinal barrier function. Intestinal commensal microorganisms also provide signals that foster normal immune system development and influence the ensuing immune responses. There is increasingly recognition that alterations of the microbial gut flora and associated changes in intestinal barrier function may be related to certain diseases of the gastrointestinal tract. This review summarizes recent advances in understanding the complex ecosystem of intestinal microbiota and its role in regulating intestinal barrier function and a few common pediatric diseases. Disruption in the establishment of a stable normal gut microflora may contribute to the pathogenesis of diseases including inflammatory bowel disease, nosocomial infection, and neonatal necrotizing enterocolitis.展开更多
The fungus U. virens is the causal agent of rice false smut disease. The green fluorescent protein (GFP) was used to mark this fungus in order to visualize and analyze the colonization and infection processes in vivo....The fungus U. virens is the causal agent of rice false smut disease. The green fluorescent protein (GFP) was used to mark this fungus in order to visualize and analyze the colonization and infection processes in vivo. Using epifluorescence microscopy colonization and infection on rice roots were visualized in vivo. After inoculation for 2 to 15 d, it was observed that the conidia and their germ-tubes had penetrated into epidermis of young roots. The hyphae were found inside the root xylem 18 d after inoculation. Generally, the transformed fungus colonized the rhizosphere, the cortex as well as the vascular tissues with symptoms of root necrosis observed. The results of this work show that U. virens colonize not only rice panicles but also the roots.展开更多
AIM:To investigate the effect of celecoxib,a selective COX-2 inhibitor,on Helicobacter pylori(H.pylori) colonization-related factors and its mechanism.METHODS:After co-incubation with celecoxib,morphology of H.pylori ...AIM:To investigate the effect of celecoxib,a selective COX-2 inhibitor,on Helicobacter pylori(H.pylori) colonization-related factors and its mechanism.METHODS:After co-incubation with celecoxib,morphology of H.pylori strain 26695 was observed under a transmission electron microscope.Flagella motility was assessed by stab agar motility test.Adherence of H.pylori to AGS cells was determined by enzyme linked immunosorbent assay.Levels of mRNA expression in flagellar genes(flaA,flaB),urease genes(ureA,ureB)and adhesin genes(babA,sabA,alpA,alpB,hpaA,hopZ)were measured by real-time polymerase chain reaction.RESULTS:Separation and non-integrity of bacterial cell wall,rarefaction and asymmetry of cytoplasm,and even lysis of H.pylori were observed in the presence of celecoxib.When H.pylori strains were incubated in the presence of celecoxib,their flagellar motility and adherence to AGS cells were inhibited.The expression of ureA,ureB,babA,sabA,alpA,alpB,hpaA,hopZ was up-regulated while the expression of flaA,flaB was down-regulated in the presence of celecoxib.CONCLUSION:Celecoxib inhibits flagellar motility and adherence of H.pylori to AGS cells,and destructs their normal structure in vitro.展开更多
Viable cell count was used to determine whether Metschnikowia sp.C14 can colonize the intestine of juvenile sea cucumber Apostichopus japonicus.Sea cucumber individuals were divided into two groups,which were fed the ...Viable cell count was used to determine whether Metschnikowia sp.C14 can colonize the intestine of juvenile sea cucumber Apostichopus japonicus.Sea cucumber individuals were divided into two groups,which were fed the control diet for 38 days or the C14-supplemented diet at 105 cells g−1 diet for 28 days,then the control diet from day 29 to day 38.The number of C14 cells in the intestine of sea cucumber fed the C14-supplemented diet significantly increased from day 7 to day 28,and decreased from day 29 to day 38.Sea cucumber fed with the diet containing C14 showed a significant increase in trypsin activity and lipase activity from day 21 to day 33 compared with the control.Feeding C14 significantly improved the phagocytic activity and respiratory burst in coelomocytes from day 21 to day 35 and from day 14 to day 38,respectively.In addition,there was an obvious enhancement in lysozyme activity(from day 21 to day 38 or day 33),phenoloxidase activity(from day 21 to day 28)and total nitric oxide synthase activity(from day 14 to day 38)in coelomic fluid supernatant and/or coelomocyte cell lysate supernatant compared with the control.There were significant positive correlations between the number of C14 cells colonizing the intestine and trypsin activity of the intestine,lysozyme activity of the coelomic fluid supernatant and coelomocyte lysate supernatant from sea cucumber.These data suggested that the number of C14 cells should be maintained at 105 cfu(colony-forming units)g−1 intestine material for the maximum benefit.展开更多
Horses, like all animals, are born without the symbiotic microbes that occupy the gastrointestinal tracts of mature animals. As grazing animals, horses rely on these microbes to fully utilize the grasses and other cel...Horses, like all animals, are born without the symbiotic microbes that occupy the gastrointestinal tracts of mature animals. As grazing animals, horses rely on these microbes to fully utilize the grasses and other cellulosic feeds that they consume. Thus, colonization of the foal's gastrointestinal tract must occur between birth and weaning. The feces of nine mare and foal pairs were sampled from the day of parturition until 12 weeks of age, and the samples were analyzed by polymerase chain reaction amplification of the bacterial 16S rRNA gene and denaturing gradient gel electrophoresis (PCR-DGGE). The gels from feces of day (d) 0 foals had no or very few ( x = 3, n = 6) bands, which indicates that species richness was low. The number of bands increased during the first 4 days of life, and by d 14 the foals and mares had similar numbers of bands ( x = 28, n = 23). Some bands were present in young foals, but not in mares or in foals on d 42 or d 84, which indicated succession of bacterial species. When the PCR-DGGE profiles were compared with Dice's algorithm, all mare-foal pairwise similarities on d 14 and later were as great as the pairwise similarities between mares. These results are consistent with the idea that foals are born with a sterile gut, colonization proceeds rapidly, and a mature microbial community is present in the first few weeks of life.展开更多
To understand arbuscular mycorrhizal(AM)fungi resources and develop AM fungal species in ornamental plants with saline-alkaline tolerances,Iris lactea,which grows in the Songnen saline-alkaline grassland with a high o...To understand arbuscular mycorrhizal(AM)fungi resources and develop AM fungal species in ornamental plants with saline-alkaline tolerances,Iris lactea,which grows in the Songnen saline-alkaline grassland with a high ornamental value,was selected as the experimental material,and the colonization characteristics of its roots and the AM fungal diversity in its rhizosphere were explored.The results of the observations and calculations of mycorrhizae from ten different samples showed that AM fungi colonized the roots of I.lactea and formed Arum-type mycorrhizal structures.There was a significant correlation between soil spore density and pH value,while the colonization rate showed a fluctuating trend with increasing pH values.The observed colonization intensities were of Levels II(1%–10%)or III(11%–50%),and the vesicle abundances were of grades A2 or A3 among different sites.AM fungi produced a large number of mycelia and vesicles in the roots of I.lactea after colonization.Thirty-seven species belonging to 15 genera of AM fungi were isolated from the rhizosphere of I.lactea and identified by morphological identification.Funneliformis and Glomus were the dominant genera,accounting for 21.79%and 20.85%of the total number,respectively.F.mosseae and Rhizophagus intraradices were isolated in all samples with importance values of 58.62 and 51.19,respectively.These results are expected to provide a theoretical basis for the analysis of the salt tolerance mechanism of I.lactea and for the discovery,exploration and further screening of AM fungal resources with salinity tolerances in saline-alkaline soils.展开更多
Background: Complicated skin and skin structure infections (cSSSIs) due to Staphylococcus aureus, including methicillin-resistant S. aureus (MRSA), are associated with significant morbidity. Re-ducing MRSA carriage ha...Background: Complicated skin and skin structure infections (cSSSIs) due to Staphylococcus aureus, including methicillin-resistant S. aureus (MRSA), are associated with significant morbidity. Re-ducing MRSA carriage has been a focus of infection control interventions. The prevalence of MRSA colonization after successful treatment of a MRSA cSSSI is unknown. Methods: Secondary analysis of a randomized controlled trial comparing linezolid and vancomycin for the treatment of MRSA cSSSI. Adult patients that had a colonization culture, confirmed MRSA cSSSI, received at least one dose of study treatment, and had an outcome recorded at end of study. Patient, clinical characteristics and prevalence of colonization were compared by treatment regimens. A multivariate regression model identified predictors of MRSA colonization at EOS. Results: There were 456 patients evaluated. The prevalence of MRSA colonization was higher for vancomycin treated patients compared to linezolid treated patients at end of treatment (EOT) (28% vs. 5%, p < 0.001) and EOS (34% vs. 22%, p < 0.01). Independent predictors of colonization at EOS after treatment for a MRSA cSSSI included diagnosis, primarily driven by abscess, black race, treatment with vancomycin, MRSA mixed infection and male gender. Conclusion: Patients treated with linezolid for a cSSSI had less MRSA colonization at EOT and EOS compared to those treated with vancomycin. Multiple independent predictors of MRSA colonization were identified. Additional studies evaluating the relationship of MRSA colonization after treatment of cSSSI are needed.展开更多
Bacteria of the genus Lactobacillus are widely used as oral probiotics due to their putative health benefits. In this study, we compared the colonization ability of two Lactobacillus strains that were identified as au...Bacteria of the genus Lactobacillus are widely used as oral probiotics due to their putative health benefits. In this study, we compared the colonization ability of two Lactobacillus strains that were identified as autochthonous to the human gastrointestinal tract (Lactobacillus reuteri ATCC PTA 6475 (MM4-1a) and (Lactobacillus mucosae FSL-04) with that of an allochthonous strain (Lactobacillus acidophilus DDS-1). Colonization ability was tested in a single-blinded, cross-over study, with twelve human subjects. The test strains were quantified in fecal samples by two independent methods, selective plating and molecular typing and quantitative real time PCR. The study revealed that the two autochthonous strains (L. reuteri ATCC PTA 6475 and L. mucosae FSL-04) reached higher population levels in fecal samples and were recovered more frequently from subjects compared to the allochthonous strain (L. acidophilus DDS-1). All three strains became undetectable 8 days after the end of consumption with one exception, showing that persistence of all three strains remains short term in most individuals. In conclusion, this study showed that autochthonous Lactobacillus strains can be established more efficiently, albeit temporarily, in the human gastrointestinal tract, suggesting that evolutionary and ecological characteristics could be valuable criteria for the selection of probiotic strains.展开更多
A constitutive expression vector pHY300-F1gfp was constructed to test the function of a promoter F1 subcloned from a rice epiphyte Bacillus brevis strain DX01. The DX01 cells harboring plasmid pHY300-F1gfp were detect...A constitutive expression vector pHY300-F1gfp was constructed to test the function of a promoter F1 subcloned from a rice epiphyte Bacillus brevis strain DX01. The DX01 cells harboring plasmid pHY300-F1gfp were detected to produce bright green fluorescence. Subsequently, the gfp-tagged B. brevis strain was released into the soil and its survival was investigated by PCR and the detection of green fluorescence. The spatial location of in situ gfp-tagged bacterial cells on the root surface of rice seedlings was visualized. All these results indicated that green fluorescent protein is an ideal molecular marker for detection of the activities of promoter F1, and it is also a reliable probe to monitor specific B. brevis bacteria in the environment.展开更多
sodA2-encoding manganese-containing superoxide dismutase(MnSOD2)in Bacillus cereus 905 plays an essential role in antioxidative stress,nutrition utilization,rhizosphere and phyllosphere colonization.However,the genes ...sodA2-encoding manganese-containing superoxide dismutase(MnSOD2)in Bacillus cereus 905 plays an essential role in antioxidative stress,nutrition utilization,rhizosphere and phyllosphere colonization.However,the genes involved in regulating the sod A2 expression have not been clearly elucidated in B.cereus.In this study,a genome-wide random insertion mutagenesis was constructed by using transposon TnYLB-1 to identify novel genes regulating the sodA2 expression.Seven mutants that changed the sodA2 expression at both m RNA and protein levels were finally obtained.Sequence analysis and BLAST data showed that the genes disrupted by TnYLB-1 in B.cereus 905 shared high conservations with those in the B.cereus type strain,ATCC 14579.These genes encode heat-inducible transcription repressor,chloride channel protein,recombinase A,ferrous iron transport protein,nucleoside diphosphate kinase,and histidine ammonia-lyase.Besides,we also provided the evidence that the genes regulating the sodA2 expression could influence colonization ability of B.cereus 905 on wheat roots.Specifically,those genes downregulating the sodA2 expression significantly reduced bacterial colonization on wheat roots,and mutants with increased MnSOD2 activities could enhance bacterial population densities on wheat roots to a certain degree.Our work provided information that multiple genes are involved in MnSOD2 production and wheat root colonization.The molecular regulatory pathways through which these genes modulate the sod A2 expression and root colonization need to be investigated extensively in the future.展开更多
文摘BACKGROUND A previous study compared vortexing and Maki techniques for the diagnosis of catheter-related bloodstream infection(CRBSI),and concluded that vortexing was not superior to Maki method.AIM To determine whether the combined use of vortexing and Maki techniques provides profitability versus the Maki technique for the diagnosis of catheter tip colonization(CTC)and CRBSI.METHODS Observational and prospective study carried out in an Intensive Care Unit.Patients with suspected catheter-related infection(CRI)and with one central venous catheter for at least 7 days were included.The area under the curve(AUC)of the Maki technique,the vortexing technique and the combination of both techniques for the diagnosis of CTC and CRBSI were compared.RESULTS We included 136 episodes of suspected CRI.We found 21 cases of CTC of which 10 were also CRBSI cases.Of the 21 CTC episodes,18(85.7%)were diagnosed by Maki technique and vortexing technique,3(14.3%)only by the technique of Maki,and none only by technique of vortexing.Of the 10 CRBSI episodes,9(90.0%)were diagnosed by the techniques of Maki and vortexing,1(10.0%)was diagnosed only by the technique of Maki,and none only by the technique of vortexing.We no found differences in the comparison of AUC between the technique of Maki and the combination of Maki and vortexing techniques for the diagnosis of CTC(P=0.99)and CRBSI(P=0.99).CONCLUSION The novel finding of our study was that the combined use of vortexing and Maki techniques did not provide profitability to the technique of Maki alone to CRBSI diagnosis of.
文摘BACKGROUND The rising prevalence of carbapenem-resistant Acinetobacter baumannii(CRAB)in neonatal intensive care units(NICUs)represents an escalating challenge in healthcare settings,particularly in managing hospital-acquired infections(HAIs).Studies across various World Health Organization regions have documented a significant incidence of CRAB-related HAIs,with rates as high as 41.7 cases per 1000 patients in ICUs,accounting for 13.6%of all HAIs.These infections pose a doubled mortality risk compared to infections with carbapenem-susceptible Acinetobacter baumannii.A particularly concerning aspect of CRAB colonization is its asymptomatic nature,enabling its transmission through healthcare workers(HCWs)or the NICU environment to vulnerable neonates with developing immune systems.AIM To explore the prevalence of CRAB colonization in NICUs,focusing on neonates,healthcare workers,and the environmental samples,to enhance epidemiological understanding and inform targeted interventions.METHODS We conducted according to PRISMA 2020 checklist guidelines,a comprehensive literature search across multiple databases including MEDLINE(Ovid),EMBASE(Ovid),Global Health(Ovid),Web of Science,and Global Index Me-dicus.Studies were selected based on predetermined criteria,primarily involving neonates,HCWs,and environmental swabs,using culture or molecular methods to detect CRAB colonization.We excluded studies that did not specifically focus on NICUs,were duplicates,or lacked necessary data.The study selection and quality assessment were conducted independently by two reviewers.Data extraction involved collecting comprehensive details about each study.Our statistical analysis used a random-effects model to calculate the pooled prevalence and confidence intervals,stratifying results by regional location.We assessed study heterogeneity using Cochran's Q statistic and I²statistic,with regression tests employed to evaluate potential publication bias.RESULTS We analyzed 737 records from five databases,ultimately including 13 studies from ten countries.For neonates,the pooled prevalence was 4.8%(95%CI:1.1%to 10.5%)with the highest rates observed in South-East Asia(10.5%;95%CI:2.4%to 23.3%).Among HCWs,a single Indian study reported a 3.3%prevalence.Environmental samples showed a prevalence of 2.3%(95%CI:0%to 9.3%),with the highest rates in South-East Asia(10%;95%CI:4.2%to 17.7%).Significant heterogeneity was found across studies,and no publication bias was detected.CONCLUSION This systematic review highlights a significant prevalence of CRAB colonization in neonates across various regions,particularly in South-East Asia,contrasting with lower rates in high-income countries.The study reveals a gap in research on HCWs colonization,with only a single study from India reporting moderate prevalence.Environmental samples indicate moderate levels of CRAB contamination,again higher in South-East Asia.These findings underscore the need for more extensive and focused research on CRAB colonization in NICUs,including exploring the roles of HCWs and the environment in transmission,understanding antimicrobial resistance patterns,and developing effective prevention measures.
基金funded by the grants from the National Key R&D Program of China(No.2022YFD1301004)National Natural Science Foundation of China(No.31601962)+1 种基金Fundamental Research Funds for the Central Universities(2662019QD021)Key Laboratory of Molecular Animal Nutrition of Zhejiang University(KLMAN202101 and KLMAN202205)。
文摘Colonization and development of the gut microbiome are crucial for the growth and health of calves.In this review,we summarized the colonization,beneficial nutrition,immune function of gut microbiota,function of the gut barrier,and the evolution of core microbiota in the gut of calves of different ages.Homeostasis of gut microbiome is beneficial for nutritional and immune system development of calves.Disruption of the gut microbiome leads to digestive diseases in calves,such as diarrhea and intestinal inflammation.Microbiota already exists in the gut of calf fetuses,and the colonization of microbiota continues to change dynamically under the influence of various factors,which include probiotics,diet,age,and genotype.Colonization depends on the interaction between the gut microbiota and the immune system of calves.The abundance and diversity of these commensal microbiota stabilize and play a critical role in the health of calves.
基金financially supported by the grants from the Inter-governmental International Cooperation Special Project of National Key R&D Program of China(2019YFE0114200)the Natural Science Foundation Project of Science and Technology Department of Jilin Province,China(20200201215JC).
文摘Sclerotinia stem rot,caused by Sclerotinia sclerotiorum,is a destructive soil-borne disease leading to huge yield loss.We previously reported that Klebsiella variicola FH-1 could degrade atrazine herbicides,and the vegetative growth of atrazine-sensitive crops(i.e.,soybean)was significantly increased in the FH-1-treated soil.Interestingly,we found that FH-1 could promote soybean growth and induce resistance to S.sclerotiorum.In our study,strain FH-1 could grow in a nitrogen-free environment,dissolve inorganic phosphorus and potassium,and produce indoleacetic acid and a siderophore.The results of pot experiments showed that K.variicola FH-1 promoted soybean plant development,substantially improving plant height,fresh weight,and root length,and induced resistance against S.sclerotiorum infection in soybean leaves.The area under the disease progression curve(AUDPC)for treatment with strain FH-1 was significantly lower than the control and was reduced by up to 42.2%within 48 h(P<0.001).Moreover,strain FH-1 rcovered the activities of catalase,superoxide dismutase,peroxidase,phenylalanine ammonia lyase,and polyphenol oxidase,which are involved in plant protection,and reduced malondialdehyde accumulation in the leaves.The mechanism of induction of resistance appeared to be primarily resulted from the enhancement of transcript levels of PR10,PR12,AOS,CHS,and PDF1.2 genes.The colonization of FH-1 on soybean root,determined using CLSM and SEM,revealed that FH-1 colonized soybean root surfaces,root hairs,and exodermis to form biofilms.In summary,K.variicola FH-1 exhibited the biological control potential by inducing resistance in soybean against S.sclerotiorum infection,providing new suggestions for green prevention and control.
基金Medical Health Science and Technology Development Plan Project of Shandong Province,No.202103030765Natural Science Foundation of Shandong Province,No.ZR2021QH195 and No.ZR2020QH035.
文摘After being ingested and entering the human stomach,Helicobacter pylori(H.pylori)adopts several effective strategies to adhere to and colonize the gastric mucosa and move to different regions of the stomach to obtain more nutrients and escape from the harsher environments of the stomach,leading to acute infection and chronic gastritis,which is the basis of malignant gastric tumors.The endoscopic manifestations and pathological features of H.pylori infection are diverse and vary with the duration of infection.In this review,we describe the endoscopic manifestations of each stage of H.pylori gastritis and then reveal the potential mechanisms of bacterial intragastric colonization and migration from the perspective of endoscopists to provide direction for future research on the effective therapy and management of H.pylori infection.
基金funded by National Natural Science Foundation of China with the Grant No.31601986Heilongjiang Postdoctoral Scientific Research Developmental Fund(LBH-Q16005).
文摘Arbuscular mycorrhizal(AM)fungi can form symbiosis with 90%of the vascular plants and play important roles in ecosystem.To realize the AM fungal colonization at different succession stages in saline-alkali land and screen AM fungi species with great functions,roots and soil samples were collected from the three succession stages of Songnen saline-alkali grassland.The soil properties and AM fungal colonization were measured,and the fungus distributed extensively in three stages was annotated by sequencing for AML1/AML2 target,subsequently,maize was selected as the host to verify its colonization.The results showed that the soil properties improved with the succession of saline-alkali grassland.The plants’communities of the three stages could be colonized by AM fungi,and the colonization rate of Leymus chinensis(the third stage)ranged from 66.67%to 100%,Puccinellia tenuiflora(the second stage)ranged from 50%to 80%,while the Suaeda glauca(the first stage)was only 35%–60%.Glomeraceae sp1 was identified as the dominant AM fungi species which occurred frequently in the succession of saline-alkali land with the isolation frequency,relative abundance,and importance value of 100%,18.1%,and 59.1%,respectively.The colonization rate of Glomeraceae sp1 in maize ranged from 80%to 87%and similar mycorrhizal characteristics were detected in the roots of P.tenuiflora,S.glauca,and L.chinensis,indicating that Glomeraceae sp1 colonized the samples in the field.The correlation matrix indicated that colonization rate,colonization intensity,and vesicle abundance were closely related to soil conditions most,and they were related significantly to all the soil properties except cellulase activity.Besides,redundancy analysis(RDA)showed that soil properties drove the changes of AM fungal colonization and sporulation.These results will provide theoretical support for realizing the relationship between AM fungal colonization and soil conditions,and also for the exploration of AM fungi species with great functions.
基金Supported by A post graduate student grant awarded by Irish Research Council for Science Engineering and Technology(To Dunne C)an award from the Health Research Board Ireland(To Dolan B)a grant from Science Foundation Ireland,No.08/SRC/B1393
文摘Helicobacter pylori(H.pylori)colonizes the stomach of humans and causes chronic infection.The majority of bacteria live in the mucus layer overlying the gastric epithelial cells and only a small proportion of bacteria are found interacting with the epithelial cells.The bacteria living in the gastric mucus may act as a reservoir of infection for the underlying cells which is essential for the development of disease.Colonization of gastric mucus is likely to be key to the establishment of chronic infection.How H.pylori manages to colonise and survive in the hostile environment of the human stomach and avoid removal by mucus flow and killing by gastric acid is the subject of this review.We also discuss how bacterial and host factors may together go some way to explaining the susceptibility to colonization and the outcome of infection in different individuals.H.pylori infection of the gastric mucosa has become a paradigm for chronic infection.Understanding of why H.pylori is such a successful pathogen may help us understand how other bacterial species colonise mucosal surfaces and cause disease.
基金supported by the Beijing Municipal Natural Science Foundation(S170001)the National Natural Science Foundation of China(31630074,31272449 and 31902170)+2 种基金the National Key Research and Development Program of China(2016YFD0500506 and 2018YDF0501002)the 111 Project(B16044)the Jinxinnong Animal Science Developmental Foundation.
文摘Early colonization of intestinal microbiota during the neonatal stage plays an important role on the development of intestinal immune system and nutrients absorption of the host.Compared to the normal birth weight(NBW)piglets,intrauterine growth restricted(IUGR)piglets have a different intestinal microbiota during their early life,which is related to maternal imprinting on intestinal microbial succession during gestation,at birth and via suckling.Imbalanced allocation of limited nutrients among fetuses during gestation could be one of the main causes for impaired intestinal development and microbiota colonization in neonatal IUGR piglets.In this review,we summarized the potential impact of maternal imprinting on the colonization of the intestinal microbiota in IUGR piglets,including maternal undernutrition,imbalanced allocation of nutrients among fetuses,as well as vertical microbial transmission from mother to offspring during gestation and lactation.At the same time,we give information about the current maternal nutritional strategies(mainly breastfeeding,probiotics and prebiotics)to help colonization of the advantageous intestinal microbiota for IUGR piglets.
基金the Louisiana Rice Research Board for funding this work under the Entomology Program
文摘Interactions between plants and soil microorganisms can influence the other interactions in which plants participate, including interactions with herbivores. Many fungi, including arbuscular mycorrhizal fungi(AMF), form symbiotic relationships with the roots they inhabit, and potentially alter defense against pests. The objective of this study was to document the extent of root colonization by AMF on non-flooded rice plants grown under conditions typical of commercial fields. We hypothesized that AMF naturally colonized rice plants in different rice producing field locations. Rice plant samples were collected from areas across the southern United States, including Texas, Mississippi, Arkansas and two research stations in Louisiana. We quantified the amount of AMF colonization in insecticide-free rice plants over three consecutive years(2014–2016). The results revealed natural colonization of AMF in all rice producing areas. In all the three years of survey, rice-AMF associations were the greatest in Arkansas followed by Mississippi and Texas. This research will help draw attention to natural colonization of AMF in rice producing areas that can impact future rice research and production by facilitating agricultural exploitation of the symbiosis.
基金supported by the National Key R&D Program of China[2018YFC1200400]the Nature Science Foundation of the Jiangsu Higher Education Institutions of China[14KJA220002]+1 种基金the Postgraduate Scientific Research and Innovation Program of Jiangsu Province[KYLX16_0859]the National Natural Science Foundation of China[31370643]。
文摘Bacillus cereus NJSZ-13,an endophytic bacterium with nematicidal activity,was isolated from stems of healthy Pinus elliottii Engelm.Colonization of P.massoniana Lamb.by endophytic B.cereus was studied using scanning electron microscopy and confocal laser scanning microscopy.After the plasmid p GFP78 containing the green fluorescent protein(GFP)gene was transformed into the NJSZ-13 strain,the NJSZ-13:gfp showed the same nematicidal activity and growth curve as the wild-type strain,and the plasmid p GFP78 was stably maintained in strain NJSZ-13 for at least 96 h of bacterial cultivation on medium without antibiotics.After inoculation into Masson pine roots,colonization of the NJSZ-13:gfp strain in plant roots and stems was visualized using confocal laser scanning and the strain was enumerated in inoculated roots and stems.These results suggest that NJSZ-13:gfp is an efficient colonizer of Masson pine and can transfer vertically from roots to stems.
基金Supported by In part by Zhejiang Provincial Natural Science Foundation,No.LY12H04005 and LY13H040011
文摘The intestinal tract is colonized soon after birth with a variety of ingested environmental and maternal microflora. This process is influenced by many factors including mode of delivery, diet, environment, and the use of antibiotics. Normal intestinal microflora provides protection against infection, ensures tolerance to foods, and contributes to nutrient digestion and energy harvest. In addition, enteral feeding and colonization with the normal commensal flora are necessary for the maintenance of intestinal barrier function and play a vital role in the regulation of intestinal barrier function. Intestinal commensal microorganisms also provide signals that foster normal immune system development and influence the ensuing immune responses. There is increasingly recognition that alterations of the microbial gut flora and associated changes in intestinal barrier function may be related to certain diseases of the gastrointestinal tract. This review summarizes recent advances in understanding the complex ecosystem of intestinal microbiota and its role in regulating intestinal barrier function and a few common pediatric diseases. Disruption in the establishment of a stable normal gut microflora may contribute to the pathogenesis of diseases including inflammatory bowel disease, nosocomial infection, and neonatal necrotizing enterocolitis.
文摘The fungus U. virens is the causal agent of rice false smut disease. The green fluorescent protein (GFP) was used to mark this fungus in order to visualize and analyze the colonization and infection processes in vivo. Using epifluorescence microscopy colonization and infection on rice roots were visualized in vivo. After inoculation for 2 to 15 d, it was observed that the conidia and their germ-tubes had penetrated into epidermis of young roots. The hyphae were found inside the root xylem 18 d after inoculation. Generally, the transformed fungus colonized the rhizosphere, the cortex as well as the vascular tissues with symptoms of root necrosis observed. The results of this work show that U. virens colonize not only rice panicles but also the roots.
基金Supported by National Natural Science Foundation of China,No.30770981
文摘AIM:To investigate the effect of celecoxib,a selective COX-2 inhibitor,on Helicobacter pylori(H.pylori) colonization-related factors and its mechanism.METHODS:After co-incubation with celecoxib,morphology of H.pylori strain 26695 was observed under a transmission electron microscope.Flagella motility was assessed by stab agar motility test.Adherence of H.pylori to AGS cells was determined by enzyme linked immunosorbent assay.Levels of mRNA expression in flagellar genes(flaA,flaB),urease genes(ureA,ureB)and adhesin genes(babA,sabA,alpA,alpB,hpaA,hopZ)were measured by real-time polymerase chain reaction.RESULTS:Separation and non-integrity of bacterial cell wall,rarefaction and asymmetry of cytoplasm,and even lysis of H.pylori were observed in the presence of celecoxib.When H.pylori strains were incubated in the presence of celecoxib,their flagellar motility and adherence to AGS cells were inhibited.The expression of ureA,ureB,babA,sabA,alpA,alpB,hpaA,hopZ was up-regulated while the expression of flaA,flaB was down-regulated in the presence of celecoxib.CONCLUSION:Celecoxib inhibits flagellar motility and adherence of H.pylori to AGS cells,and destructs their normal structure in vitro.
基金supported by the Scientific Research Project from the Department of Education of Liaoning Province (No. JL201903)
文摘Viable cell count was used to determine whether Metschnikowia sp.C14 can colonize the intestine of juvenile sea cucumber Apostichopus japonicus.Sea cucumber individuals were divided into two groups,which were fed the control diet for 38 days or the C14-supplemented diet at 105 cells g−1 diet for 28 days,then the control diet from day 29 to day 38.The number of C14 cells in the intestine of sea cucumber fed the C14-supplemented diet significantly increased from day 7 to day 28,and decreased from day 29 to day 38.Sea cucumber fed with the diet containing C14 showed a significant increase in trypsin activity and lipase activity from day 21 to day 33 compared with the control.Feeding C14 significantly improved the phagocytic activity and respiratory burst in coelomocytes from day 21 to day 35 and from day 14 to day 38,respectively.In addition,there was an obvious enhancement in lysozyme activity(from day 21 to day 38 or day 33),phenoloxidase activity(from day 21 to day 28)and total nitric oxide synthase activity(from day 14 to day 38)in coelomic fluid supernatant and/or coelomocyte cell lysate supernatant compared with the control.There were significant positive correlations between the number of C14 cells colonizing the intestine and trypsin activity of the intestine,lysozyme activity of the coelomic fluid supernatant and coelomocyte lysate supernatant from sea cucumber.These data suggested that the number of C14 cells should be maintained at 105 cfu(colony-forming units)g−1 intestine material for the maximum benefit.
文摘Horses, like all animals, are born without the symbiotic microbes that occupy the gastrointestinal tracts of mature animals. As grazing animals, horses rely on these microbes to fully utilize the grasses and other cellulosic feeds that they consume. Thus, colonization of the foal's gastrointestinal tract must occur between birth and weaning. The feces of nine mare and foal pairs were sampled from the day of parturition until 12 weeks of age, and the samples were analyzed by polymerase chain reaction amplification of the bacterial 16S rRNA gene and denaturing gradient gel electrophoresis (PCR-DGGE). The gels from feces of day (d) 0 foals had no or very few ( x = 3, n = 6) bands, which indicates that species richness was low. The number of bands increased during the first 4 days of life, and by d 14 the foals and mares had similar numbers of bands ( x = 28, n = 23). Some bands were present in young foals, but not in mares or in foals on d 42 or d 84, which indicated succession of bacterial species. When the PCR-DGGE profiles were compared with Dice's algorithm, all mare-foal pairwise similarities on d 14 and later were as great as the pairwise similarities between mares. These results are consistent with the idea that foals are born with a sterile gut, colonization proceeds rapidly, and a mature microbial community is present in the first few weeks of life.
基金This work was supported by the National Natural Science Foundation of China(31601986)the Fundamental Research Funds for the Central Universities(2572018BK02)Heilongjiang Postdoctoral Scientific Research Developmental Fund(LBH-Q16005).
文摘To understand arbuscular mycorrhizal(AM)fungi resources and develop AM fungal species in ornamental plants with saline-alkaline tolerances,Iris lactea,which grows in the Songnen saline-alkaline grassland with a high ornamental value,was selected as the experimental material,and the colonization characteristics of its roots and the AM fungal diversity in its rhizosphere were explored.The results of the observations and calculations of mycorrhizae from ten different samples showed that AM fungi colonized the roots of I.lactea and formed Arum-type mycorrhizal structures.There was a significant correlation between soil spore density and pH value,while the colonization rate showed a fluctuating trend with increasing pH values.The observed colonization intensities were of Levels II(1%–10%)or III(11%–50%),and the vesicle abundances were of grades A2 or A3 among different sites.AM fungi produced a large number of mycelia and vesicles in the roots of I.lactea after colonization.Thirty-seven species belonging to 15 genera of AM fungi were isolated from the rhizosphere of I.lactea and identified by morphological identification.Funneliformis and Glomus were the dominant genera,accounting for 21.79%and 20.85%of the total number,respectively.F.mosseae and Rhizophagus intraradices were isolated in all samples with importance values of 58.62 and 51.19,respectively.These results are expected to provide a theoretical basis for the analysis of the salt tolerance mechanism of I.lactea and for the discovery,exploration and further screening of AM fungal resources with salinity tolerances in saline-alkaline soils.
文摘Background: Complicated skin and skin structure infections (cSSSIs) due to Staphylococcus aureus, including methicillin-resistant S. aureus (MRSA), are associated with significant morbidity. Re-ducing MRSA carriage has been a focus of infection control interventions. The prevalence of MRSA colonization after successful treatment of a MRSA cSSSI is unknown. Methods: Secondary analysis of a randomized controlled trial comparing linezolid and vancomycin for the treatment of MRSA cSSSI. Adult patients that had a colonization culture, confirmed MRSA cSSSI, received at least one dose of study treatment, and had an outcome recorded at end of study. Patient, clinical characteristics and prevalence of colonization were compared by treatment regimens. A multivariate regression model identified predictors of MRSA colonization at EOS. Results: There were 456 patients evaluated. The prevalence of MRSA colonization was higher for vancomycin treated patients compared to linezolid treated patients at end of treatment (EOT) (28% vs. 5%, p < 0.001) and EOS (34% vs. 22%, p < 0.01). Independent predictors of colonization at EOS after treatment for a MRSA cSSSI included diagnosis, primarily driven by abscess, black race, treatment with vancomycin, MRSA mixed infection and male gender. Conclusion: Patients treated with linezolid for a cSSSI had less MRSA colonization at EOT and EOS compared to those treated with vancomycin. Multiple independent predictors of MRSA colonization were identified. Additional studies evaluating the relationship of MRSA colonization after treatment of cSSSI are needed.
文摘Bacteria of the genus Lactobacillus are widely used as oral probiotics due to their putative health benefits. In this study, we compared the colonization ability of two Lactobacillus strains that were identified as autochthonous to the human gastrointestinal tract (Lactobacillus reuteri ATCC PTA 6475 (MM4-1a) and (Lactobacillus mucosae FSL-04) with that of an allochthonous strain (Lactobacillus acidophilus DDS-1). Colonization ability was tested in a single-blinded, cross-over study, with twelve human subjects. The test strains were quantified in fecal samples by two independent methods, selective plating and molecular typing and quantitative real time PCR. The study revealed that the two autochthonous strains (L. reuteri ATCC PTA 6475 and L. mucosae FSL-04) reached higher population levels in fecal samples and were recovered more frequently from subjects compared to the allochthonous strain (L. acidophilus DDS-1). All three strains became undetectable 8 days after the end of consumption with one exception, showing that persistence of all three strains remains short term in most individuals. In conclusion, this study showed that autochthonous Lactobacillus strains can be established more efficiently, albeit temporarily, in the human gastrointestinal tract, suggesting that evolutionary and ecological characteristics could be valuable criteria for the selection of probiotic strains.
基金Item supported by the McKnight founda-tion and science and technology commission of Shanghai (No.KBH1322093)
文摘A constitutive expression vector pHY300-F1gfp was constructed to test the function of a promoter F1 subcloned from a rice epiphyte Bacillus brevis strain DX01. The DX01 cells harboring plasmid pHY300-F1gfp were detected to produce bright green fluorescence. Subsequently, the gfp-tagged B. brevis strain was released into the soil and its survival was investigated by PCR and the detection of green fluorescence. The spatial location of in situ gfp-tagged bacterial cells on the root surface of rice seedlings was visualized. All these results indicated that green fluorescent protein is an ideal molecular marker for detection of the activities of promoter F1, and it is also a reliable probe to monitor specific B. brevis bacteria in the environment.
基金the grants from the National Natural Science Foundation of China(31701860)the Program of Science and Technology of Beijing,China(Z191100004019025)。
文摘sodA2-encoding manganese-containing superoxide dismutase(MnSOD2)in Bacillus cereus 905 plays an essential role in antioxidative stress,nutrition utilization,rhizosphere and phyllosphere colonization.However,the genes involved in regulating the sod A2 expression have not been clearly elucidated in B.cereus.In this study,a genome-wide random insertion mutagenesis was constructed by using transposon TnYLB-1 to identify novel genes regulating the sodA2 expression.Seven mutants that changed the sodA2 expression at both m RNA and protein levels were finally obtained.Sequence analysis and BLAST data showed that the genes disrupted by TnYLB-1 in B.cereus 905 shared high conservations with those in the B.cereus type strain,ATCC 14579.These genes encode heat-inducible transcription repressor,chloride channel protein,recombinase A,ferrous iron transport protein,nucleoside diphosphate kinase,and histidine ammonia-lyase.Besides,we also provided the evidence that the genes regulating the sodA2 expression could influence colonization ability of B.cereus 905 on wheat roots.Specifically,those genes downregulating the sodA2 expression significantly reduced bacterial colonization on wheat roots,and mutants with increased MnSOD2 activities could enhance bacterial population densities on wheat roots to a certain degree.Our work provided information that multiple genes are involved in MnSOD2 production and wheat root colonization.The molecular regulatory pathways through which these genes modulate the sod A2 expression and root colonization need to be investigated extensively in the future.
