Data protection in databases is critical for any organization,as unauthorized access or manipulation can have severe negative consequences.Intrusion detection systems are essential for keeping databases secure.Advance...Data protection in databases is critical for any organization,as unauthorized access or manipulation can have severe negative consequences.Intrusion detection systems are essential for keeping databases secure.Advancements in technology will lead to significant changes in the medical field,improving healthcare services through real-time information sharing.However,reliability and consistency still need to be solved.Safeguards against cyber-attacks are necessary due to the risk of unauthorized access to sensitive information and potential data corruption.Dis-ruptions to data items can propagate throughout the database,making it crucial to reverse fraudulent transactions without delay,especially in the healthcare industry,where real-time data access is vital.This research presents a role-based access control architecture for an anomaly detection technique.Additionally,the Structured Query Language(SQL)queries are stored in a new data structure called Pentaplet.These pentaplets allow us to maintain the correlation between SQL statements within the same transaction by employing the transaction-log entry information,thereby increasing detection accuracy,particularly for individuals within the company exhibiting unusual behavior.To identify anomalous queries,this system employs a supervised machine learning technique called Support Vector Machine(SVM).According to experimental findings,the proposed model performed well in terms of detection accuracy,achieving 99.92%through SVM with One Hot Encoding and Principal Component Analysis(PCA).展开更多
To capitalize on the primary role of major course teaching and to facilitate students’understanding of abstract concepts in the data structure course,it is essential to increase their interest in learning and develop...To capitalize on the primary role of major course teaching and to facilitate students’understanding of abstract concepts in the data structure course,it is essential to increase their interest in learning and develop case studies that highlight fine traditional culture.By incorporating these culture-rich case studies into classroom instruction,we employ a project-driven teaching approach.This not only allows students to master professional knowledge,but also enhances their abilities to solve specific engineering problems,ultimately fostering cultural confidence.Over the past few years,during which educational reforms have been conducted for trial runs,the feasibility and effectiveness of these reform schemes have been demonstrated.展开更多
"Data Structure and Algorithm",which is an important major subject in computer science,has a lot of problems in teaching activity.This paper introduces and analyzes the situation and problems in this course ..."Data Structure and Algorithm",which is an important major subject in computer science,has a lot of problems in teaching activity.This paper introduces and analyzes the situation and problems in this course study.A "programming factory" method is then brought out which is indeed a practice-oriented platform of the teachingstudy process.Good results are obtained by this creative method.展开更多
For the course of“Data Structures”,this paper introduces the importance and existing problems of the data structure course.Through the literature and the current teaching in major universities,the existing teaching ...For the course of“Data Structures”,this paper introduces the importance and existing problems of the data structure course.Through the literature and the current teaching in major universities,the existing teaching methods and their disadvantages are analyzed.The authors put forward teaching reform suggestions and designed an online course platform.展开更多
Aiming to increase the efficiency of gem design and manufacturing, a new method in computer-aided-design (CAD) of convex faceted gem cuts (CFGC) based on Half-edge data structure (HDS), including the algorithms for th...Aiming to increase the efficiency of gem design and manufacturing, a new method in computer-aided-design (CAD) of convex faceted gem cuts (CFGC) based on Half-edge data structure (HDS), including the algorithms for the implementation is presented in this work. By using object-oriented methods, geometrical elements of CFGC are classified and responding geometrical feature classes are established. Each class is implemented and embedded based on the gem process. Matrix arithmetic and analytical geometry are used to derive the affine transformation and the cutting algorithm. Based on the demand for a diversity of gem cuts, CAD functions both for free-style faceted cuts and parametric designs of typical cuts and visualization and human-computer interactions of the CAD system including two-dimensional and three-dimensional interactions have been realized which enhances the flexibility and universality of the CAD system. Furthermore, data in this CAD system can also be used directly by the gem CAM module, which will promote the gem CAD/CAM integration.展开更多
In this paper, a new concept called numerical structure of seismic data is introduced and the difference between numerical structure and numerical value of seismic data is explained. Our study shows that the numerical...In this paper, a new concept called numerical structure of seismic data is introduced and the difference between numerical structure and numerical value of seismic data is explained. Our study shows that the numerical seismic structure is closely related to oil and gas-bearing reservoir,so it is very useful for a geologist or a geophysicist to precisely interpret the oil-bearing layers from the seismic data. This technology can be applied to any exploration or production stage. The new method has been tested on a series of exploratory or development wells and proved to be reliable in China. Hydrocarbon-detection with this new method for 39 exploration wells on 25 structures indicates a success ratio of over 80 percent. The new method of hydrocarbon prediction can be applied for: (1) depositional environment of reservoirs with marine facies, delta, or non-marine facies (including fluvial facies, lacustrine facies); (2) sedimentary rocks of reservoirs that are non-marine clastic rocks and carbonate rock; and (3) burial depths range from 300 m to 7000 m, and the minimum thickness of these reservoirs is over 8 m (main frequency is about 50 Hz).展开更多
The key to develop 3-D GISs is the study on 3-D data model and data structure. Some of the data models and data structures have been presented by scholars. Because of the complexity of 3-D spatial phenomenon, there ar...The key to develop 3-D GISs is the study on 3-D data model and data structure. Some of the data models and data structures have been presented by scholars. Because of the complexity of 3-D spatial phenomenon, there are no perfect data structures that can describe all spatial entities. Every data structure has its own advantages and disadvantages. It is difficult to design a single data structure to meet different needs. The important subject in the3-D data models is developing a data model that has integrated vector and raster data structures. A special 3-D spatial data model based on distributing features of spatial entities should be designed. We took the geological exploration engineering as the research background and designed an integrated data model whose data structures integrats vector and raster data byadopting object-oriented technique. Research achievements are presented in this paper.展开更多
D GISs were developed simultaneously in the late 1980s in a number of different disciplines.The development of these 3D GISs can not yet meet all needs for new representations and analytical tools in 3D environments.I...D GISs were developed simultaneously in the late 1980s in a number of different disciplines.The development of these 3D GISs can not yet meet all needs for new representations and analytical tools in 3D environments.In this paper,the data structures,especially solid_based data representations are introduced.Then,a typical object_oriented data model is put forth to show a new data model.And at last,two data access methods are proposed to make the data model clear.展开更多
The designing,encodings and an instance of simulation of a binary tree for DNA computer were proposed,which utilizes the method of biology to complete inserting and deleting of the binary tree. Firstly,DNA encodings f...The designing,encodings and an instance of simulation of a binary tree for DNA computer were proposed,which utilizes the method of biology to complete inserting and deleting of the binary tree. Firstly,DNA encodings for storage and all elements of the binary tree were completely given out. Then, the implementations of all bio-operations in DNA computer were described. Finally, to prove the feasibility of this method, an actual binary tree with detailed nucleotide encodings was introduced. The process of an algorithm implemented on this binary tree was demonstrated. Based on this method, more other data structures in DNA computer can be developed.展开更多
Data governance is a subject that is becoming increasingly important in business and government. In fact, good governance data allows improved interactions between employees of one or more organizations. Data quality ...Data governance is a subject that is becoming increasingly important in business and government. In fact, good governance data allows improved interactions between employees of one or more organizations. Data quality represents a great challenge because the cost of non-quality can be very high. Therefore the use of data quality becomes an absolute necessity within an organization. To improve the data quality in a Big-Data source, our purpose, in this paper, is to add semantics to data and help user to recognize the Big-Data schema. The originality of this approach lies in the semantic aspect it offers. It detects issues in data and proposes a data schema by applying a semantic data profiling.展开更多
This paper describes the nearest neighbor (NN) search algorithm on the GBD(generalized BD) tree. The GBD tree is a spatial data structure suitable for two-or three-dimensional data and has good performance characteris...This paper describes the nearest neighbor (NN) search algorithm on the GBD(generalized BD) tree. The GBD tree is a spatial data structure suitable for two-or three-dimensional data and has good performance characteristics with respect to the dynamic data environment. On GIS and CAD systems, the R-tree and its successors have been used. In addition, the NN search algorithm is also proposed in an attempt to obtain good performance from the R-tree. On the other hand, the GBD tree is superior to the R-tree with respect to exact match retrieval, because the GBD tree has auxiliary data that uniquely determines the position of the object in the structure. The proposed NN search algorithm depends on the property of the GBD tree described above. The NN search algorithm on the GBD tree was studied and the performance thereof was evaluated through experiments.展开更多
This paper discribes the importance and necessity of the study on the data structures for displaying the mining field using the interactive technology in open pit design and planning,based upon the grid block model. T...This paper discribes the importance and necessity of the study on the data structures for displaying the mining field using the interactive technology in open pit design and planning,based upon the grid block model. The commonly used data structures--rectangular array structure and quadtree structure ,are analyzed. Two compressed data structures--compressed circular link array structure and compressed doubly-linked circular array structure,are proposed,which are much more suitable for displaying the regularly gridded block model. When the two compressed data structures are adopted,the storage space can be tremendously saved and the algorithms are simple,while the requirements of the accuracy and the manipulating speed will be both satisfied for the interactive open pit short range plan formulation.展开更多
In the engineering database system, multiple versions of a design including engineering drawings should be managed efficiently. The paper proposes an efficient spatial data structure, that is an expansion of the R tre...In the engineering database system, multiple versions of a design including engineering drawings should be managed efficiently. The paper proposes an efficient spatial data structure, that is an expansion of the R tree and HR tree, for version management of engineering drawings. A novel mechanism to manage the difference between drawings is introduced to the HR tree to eliminate redundant duplications and to reduce the amount of storage required for the data structure. Data management mechanism and structural properties of our data structure called the MVR + tree are described.展开更多
This work introduces a scalable and efficient topological structure for tetrahedral and hexahedral meshes. The design of the data structure aims at maximal flexibility and high performance. It provides a high scalabil...This work introduces a scalable and efficient topological structure for tetrahedral and hexahedral meshes. The design of the data structure aims at maximal flexibility and high performance. It provides a high scalability by using hierarchical representations of topological elements. The proposed data structure is array-based, and it is a compact representation of the half-edge data structure for volume elements and half-face data structure for volumetric meshes. This guarantees constant access time to the neighbors of the topological elements. In addition, an open-source implementation named Open Volumetric Mesh(OVM) of the proposed data structure is written in C++ using generic programming concepts.展开更多
This paper focuses on the methods and process of spatial aggregation based on semantic and geometric characteristics of spatial objects and relations among the objects with the help of spatial data structure (Formal D...This paper focuses on the methods and process of spatial aggregation based on semantic and geometric characteristics of spatial objects and relations among the objects with the help of spatial data structure (Formal Data Structure),the Local Constrained Delaunay Triangulations and semantic hierarchy.The adjacent relation among connected objects and unconnected objects has been studied through constrained triangle as elementary processing unit in aggregation operation.The hierarchical semantic analytical matrix is given for analyzing the similarity between objects types and between objects.Several different cases of aggregation have been presented in this paper.展开更多
Taxus cuspidata is a rare plant with important medicinal and ornamental value.Aiming at the obvious differences between wild and cultivated populations of T.cuspidata from Northeast China,a total of 61 samples,that is...Taxus cuspidata is a rare plant with important medicinal and ornamental value.Aiming at the obvious differences between wild and cultivated populations of T.cuspidata from Northeast China,a total of 61 samples,that is,33 wild yews and 28 cultivated yews were used to analyze the differences and correlations of the kinship,genetic diversity,and genetic structure between them by specific length amplified fragment sequencing(SLAF-seq).Finally,470725 polymorphic SLAF tags and 58622 valid SNP markers were obtained.Phylogenetic analysis showed that 61 samples were classified into 2 clusters:wild populations and cultivated populations,and some wild yews were categorized into the cultivated populations;the genetic diversity analysis showed that the Nei diversity index of wild populations(0.4068)was smaller than that of cultivated populations(0.4414),and the polymorphic information content(PIC)of wild populations(0.2861)was smaller than that of cultivated populations(0.3309).The genetic differentiation analysis showed that the total populations of gene diversity(H_(t))of cultivated and wild populations were respectively 0.8159 and 0.5685,the coefficient of gene differentiation(G_(st))of cultivated and wild populations was respectively 0.3021 and 0.1068,and the gene flow(N_(m))(2.4967)of wild populations was larger than cultivated populations(0.8199).The molecular variance(AMOVA)revealed that inter-population variation accounted for 29.57%of the total genetic variation,while intra-population variation accounted for 70.42% of the total genetic variation(p<0.001),this suggested that the genetic variation in the T.cuspidata is mainly attributed to within-population factors.In conclusion,the genetic distance between geographical ecological groups of wild populations was generally smaller than that of cultivated populations,and the degree of genetic diversity and genetic differentiation was smaller than that of cultivated populations.As evident,the utilization of SLAF-seq technology enables efficient and accurate development of SNP markers suitable for genetic analysis of T.cuspidata species.These developed SNP markers can provide a molecular foundation for T.cuspidata breeding,construction of genetic maps,variety identification,and association analysis of agronomic traits.展开更多
The South Yellow Sea basin is filled with Mesozoic-Cenozoic continental sediments overlying pre-Palaeozoic and Mesozoic-Palaeozoic marine sediments.Conventional multi-channel seismic data cannot describe the velocity ...The South Yellow Sea basin is filled with Mesozoic-Cenozoic continental sediments overlying pre-Palaeozoic and Mesozoic-Palaeozoic marine sediments.Conventional multi-channel seismic data cannot describe the velocity structure of the marine residual basin in detail,leading to the lack of a deeper understanding of the distribution and lithology owing to strong energy shielding on the top interface of marine sediments.In this study,we present seismic tomography data from ocean bottom seismographs that describe the NEE-trending velocity distributions of the basin.The results indicate that strong velocity variations occur at shallow crustal levels.Horizontal velocity bodies show good correlation with surface geological features,and multi-layer features exist in the vertical velocity framework(depth:0–10 km).The analyses of the velocity model,gravity data,magnetic data,multichannel seismic profiles,and drilling data showed that high-velocity anomalies(>6.5 km/s)of small(thickness:1–2 km)and large(thickness:>5 km)scales were caused by igneous complexes in the multi-layer structure,which were active during the Palaeogene.Possible locations of good Mesozoic and Palaeozoic marine strata are limited to the Central Uplift and the western part of the Northern Depression along the wide-angle ocean bottom seismograph array.Following the Indosinian movement,a strong compression existed in the Northern Depression during the extensional phase that caused the formation of folds in the middle of the survey line.This study is useful for reconstructing the regional tectonic evolution and delineating the distribution of the marine residual basin in the South Yellow Sea basin.展开更多
基金thankful to the Dean of Scientific Research at Najran University for funding this work under the Research Groups Funding Program,Grant Code(NU/RG/SERC/12/6).
文摘Data protection in databases is critical for any organization,as unauthorized access or manipulation can have severe negative consequences.Intrusion detection systems are essential for keeping databases secure.Advancements in technology will lead to significant changes in the medical field,improving healthcare services through real-time information sharing.However,reliability and consistency still need to be solved.Safeguards against cyber-attacks are necessary due to the risk of unauthorized access to sensitive information and potential data corruption.Dis-ruptions to data items can propagate throughout the database,making it crucial to reverse fraudulent transactions without delay,especially in the healthcare industry,where real-time data access is vital.This research presents a role-based access control architecture for an anomaly detection technique.Additionally,the Structured Query Language(SQL)queries are stored in a new data structure called Pentaplet.These pentaplets allow us to maintain the correlation between SQL statements within the same transaction by employing the transaction-log entry information,thereby increasing detection accuracy,particularly for individuals within the company exhibiting unusual behavior.To identify anomalous queries,this system employs a supervised machine learning technique called Support Vector Machine(SVM).According to experimental findings,the proposed model performed well in terms of detection accuracy,achieving 99.92%through SVM with One Hot Encoding and Principal Component Analysis(PCA).
基金the research outcomes of a blended top-tier undergraduate course in Henan ProvinceData Structures and Algorithms(Jiao Gao[2022]324)a research-based teaching demonstration course in Henan Province-Data Structures and Algorithms(Jiao Gao[2023]36)a model course of ideological and political education of Anyang Normal University-Data Structures and Algorithms(No.YBKC20210012)。
文摘To capitalize on the primary role of major course teaching and to facilitate students’understanding of abstract concepts in the data structure course,it is essential to increase their interest in learning and develop case studies that highlight fine traditional culture.By incorporating these culture-rich case studies into classroom instruction,we employ a project-driven teaching approach.This not only allows students to master professional knowledge,but also enhances their abilities to solve specific engineering problems,ultimately fostering cultural confidence.Over the past few years,during which educational reforms have been conducted for trial runs,the feasibility and effectiveness of these reform schemes have been demonstrated.
基金supported by NSF B55101680,NTIF B2090571,B2110140,SCUT x2rjD2116860,Y1080170,Y1090160,Y1100030,Y1100050,Y1110020 and S1010561121,G101056137
文摘"Data Structure and Algorithm",which is an important major subject in computer science,has a lot of problems in teaching activity.This paper introduces and analyzes the situation and problems in this course study.A "programming factory" method is then brought out which is indeed a practice-oriented platform of the teachingstudy process.Good results are obtained by this creative method.
基金supported in part by grants from Qinglan Project of Jiangsu Province(2020)High-level demonstration construction project of Sino-foreign cooperation in running schools in Jiangsu Province,Jiangsu Higher Educational Technology Research Association-2019 Higher Education Informatization Research Project(2019JSETKT035)Ideological and Political Special Project of Philosophy and Social Science Research Projects in Colleges and Universities in 2019(2019SJB422).
文摘For the course of“Data Structures”,this paper introduces the importance and existing problems of the data structure course.Through the literature and the current teaching in major universities,the existing teaching methods and their disadvantages are analyzed.The authors put forward teaching reform suggestions and designed an online course platform.
基金Supported by the National Natural Science Foundation of China(21576240)Experimental Technology Research Program of China University of Geosciences(Key Program)(SJ-201422)
文摘Aiming to increase the efficiency of gem design and manufacturing, a new method in computer-aided-design (CAD) of convex faceted gem cuts (CFGC) based on Half-edge data structure (HDS), including the algorithms for the implementation is presented in this work. By using object-oriented methods, geometrical elements of CFGC are classified and responding geometrical feature classes are established. Each class is implemented and embedded based on the gem process. Matrix arithmetic and analytical geometry are used to derive the affine transformation and the cutting algorithm. Based on the demand for a diversity of gem cuts, CAD functions both for free-style faceted cuts and parametric designs of typical cuts and visualization and human-computer interactions of the CAD system including two-dimensional and three-dimensional interactions have been realized which enhances the flexibility and universality of the CAD system. Furthermore, data in this CAD system can also be used directly by the gem CAM module, which will promote the gem CAD/CAM integration.
基金Mainly presented at the 6-th international meeting of acoustics in Aug. 2003, and The 1999 SPE Asia Pacific Oil and GasConference and Exhibition held in Jakarta, Indonesia, 20-22 April 1999, SPE 54274.
文摘In this paper, a new concept called numerical structure of seismic data is introduced and the difference between numerical structure and numerical value of seismic data is explained. Our study shows that the numerical seismic structure is closely related to oil and gas-bearing reservoir,so it is very useful for a geologist or a geophysicist to precisely interpret the oil-bearing layers from the seismic data. This technology can be applied to any exploration or production stage. The new method has been tested on a series of exploratory or development wells and proved to be reliable in China. Hydrocarbon-detection with this new method for 39 exploration wells on 25 structures indicates a success ratio of over 80 percent. The new method of hydrocarbon prediction can be applied for: (1) depositional environment of reservoirs with marine facies, delta, or non-marine facies (including fluvial facies, lacustrine facies); (2) sedimentary rocks of reservoirs that are non-marine clastic rocks and carbonate rock; and (3) burial depths range from 300 m to 7000 m, and the minimum thickness of these reservoirs is over 8 m (main frequency is about 50 Hz).
基金Project supported by the National Outstanding Youth Researchers Foundation (No.49525101)the Opening Research Foundation from LIESMARS(WKL(96)0302)
文摘The key to develop 3-D GISs is the study on 3-D data model and data structure. Some of the data models and data structures have been presented by scholars. Because of the complexity of 3-D spatial phenomenon, there are no perfect data structures that can describe all spatial entities. Every data structure has its own advantages and disadvantages. It is difficult to design a single data structure to meet different needs. The important subject in the3-D data models is developing a data model that has integrated vector and raster data structures. A special 3-D spatial data model based on distributing features of spatial entities should be designed. We took the geological exploration engineering as the research background and designed an integrated data model whose data structures integrats vector and raster data byadopting object-oriented technique. Research achievements are presented in this paper.
文摘D GISs were developed simultaneously in the late 1980s in a number of different disciplines.The development of these 3D GISs can not yet meet all needs for new representations and analytical tools in 3D environments.In this paper,the data structures,especially solid_based data representations are introduced.Then,a typical object_oriented data model is put forth to show a new data model.And at last,two data access methods are proposed to make the data model clear.
文摘The designing,encodings and an instance of simulation of a binary tree for DNA computer were proposed,which utilizes the method of biology to complete inserting and deleting of the binary tree. Firstly,DNA encodings for storage and all elements of the binary tree were completely given out. Then, the implementations of all bio-operations in DNA computer were described. Finally, to prove the feasibility of this method, an actual binary tree with detailed nucleotide encodings was introduced. The process of an algorithm implemented on this binary tree was demonstrated. Based on this method, more other data structures in DNA computer can be developed.
文摘Data governance is a subject that is becoming increasingly important in business and government. In fact, good governance data allows improved interactions between employees of one or more organizations. Data quality represents a great challenge because the cost of non-quality can be very high. Therefore the use of data quality becomes an absolute necessity within an organization. To improve the data quality in a Big-Data source, our purpose, in this paper, is to add semantics to data and help user to recognize the Big-Data schema. The originality of this approach lies in the semantic aspect it offers. It detects issues in data and proposes a data schema by applying a semantic data profiling.
文摘This paper describes the nearest neighbor (NN) search algorithm on the GBD(generalized BD) tree. The GBD tree is a spatial data structure suitable for two-or three-dimensional data and has good performance characteristics with respect to the dynamic data environment. On GIS and CAD systems, the R-tree and its successors have been used. In addition, the NN search algorithm is also proposed in an attempt to obtain good performance from the R-tree. On the other hand, the GBD tree is superior to the R-tree with respect to exact match retrieval, because the GBD tree has auxiliary data that uniquely determines the position of the object in the structure. The proposed NN search algorithm depends on the property of the GBD tree described above. The NN search algorithm on the GBD tree was studied and the performance thereof was evaluated through experiments.
文摘This paper discribes the importance and necessity of the study on the data structures for displaying the mining field using the interactive technology in open pit design and planning,based upon the grid block model. The commonly used data structures--rectangular array structure and quadtree structure ,are analyzed. Two compressed data structures--compressed circular link array structure and compressed doubly-linked circular array structure,are proposed,which are much more suitable for displaying the regularly gridded block model. When the two compressed data structures are adopted,the storage space can be tremendously saved and the algorithms are simple,while the requirements of the accuracy and the manipulating speed will be both satisfied for the interactive open pit short range plan formulation.
文摘In the engineering database system, multiple versions of a design including engineering drawings should be managed efficiently. The paper proposes an efficient spatial data structure, that is an expansion of the R tree and HR tree, for version management of engineering drawings. A novel mechanism to manage the difference between drawings is introduced to the HR tree to eliminate redundant duplications and to reduce the amount of storage required for the data structure. Data management mechanism and structural properties of our data structure called the MVR + tree are described.
基金Supported by Fundamental Research Funds for the Central Universities(Nos.2013ZM087,2012zz0062,2012zz0063)Doctoral Fund of Ministry of Education of China(No.20130172120010)
文摘This work introduces a scalable and efficient topological structure for tetrahedral and hexahedral meshes. The design of the data structure aims at maximal flexibility and high performance. It provides a high scalability by using hierarchical representations of topological elements. The proposed data structure is array-based, and it is a compact representation of the half-edge data structure for volume elements and half-face data structure for volumetric meshes. This guarantees constant access time to the neighbors of the topological elements. In addition, an open-source implementation named Open Volumetric Mesh(OVM) of the proposed data structure is written in C++ using generic programming concepts.
文摘This paper focuses on the methods and process of spatial aggregation based on semantic and geometric characteristics of spatial objects and relations among the objects with the help of spatial data structure (Formal Data Structure),the Local Constrained Delaunay Triangulations and semantic hierarchy.The adjacent relation among connected objects and unconnected objects has been studied through constrained triangle as elementary processing unit in aggregation operation.The hierarchical semantic analytical matrix is given for analyzing the similarity between objects types and between objects.Several different cases of aggregation have been presented in this paper.
基金This work was supported by Grants from the National Science Foundation of China to Yanwen Zhang(32272757,31972363)Grants from the Liaoning Provincial Department of Education Project to Dandan Wang(JYTMS20230698)Grants from the Liaoning Provincial Science and Technology Fund Project:Comparative Multi-Omics Study of Wild and Cultivated Species of Taxus chinensis.
文摘Taxus cuspidata is a rare plant with important medicinal and ornamental value.Aiming at the obvious differences between wild and cultivated populations of T.cuspidata from Northeast China,a total of 61 samples,that is,33 wild yews and 28 cultivated yews were used to analyze the differences and correlations of the kinship,genetic diversity,and genetic structure between them by specific length amplified fragment sequencing(SLAF-seq).Finally,470725 polymorphic SLAF tags and 58622 valid SNP markers were obtained.Phylogenetic analysis showed that 61 samples were classified into 2 clusters:wild populations and cultivated populations,and some wild yews were categorized into the cultivated populations;the genetic diversity analysis showed that the Nei diversity index of wild populations(0.4068)was smaller than that of cultivated populations(0.4414),and the polymorphic information content(PIC)of wild populations(0.2861)was smaller than that of cultivated populations(0.3309).The genetic differentiation analysis showed that the total populations of gene diversity(H_(t))of cultivated and wild populations were respectively 0.8159 and 0.5685,the coefficient of gene differentiation(G_(st))of cultivated and wild populations was respectively 0.3021 and 0.1068,and the gene flow(N_(m))(2.4967)of wild populations was larger than cultivated populations(0.8199).The molecular variance(AMOVA)revealed that inter-population variation accounted for 29.57%of the total genetic variation,while intra-population variation accounted for 70.42% of the total genetic variation(p<0.001),this suggested that the genetic variation in the T.cuspidata is mainly attributed to within-population factors.In conclusion,the genetic distance between geographical ecological groups of wild populations was generally smaller than that of cultivated populations,and the degree of genetic diversity and genetic differentiation was smaller than that of cultivated populations.As evident,the utilization of SLAF-seq technology enables efficient and accurate development of SNP markers suitable for genetic analysis of T.cuspidata species.These developed SNP markers can provide a molecular foundation for T.cuspidata breeding,construction of genetic maps,variety identification,and association analysis of agronomic traits.
基金The National Natural Science Foundation of China under contract No.41806048the Open Fund of the Hubei Key Laboratory of Marine Geological Resources under contract No.MGR202009+2 种基金the Fund from the Key Laboratory of Deep-Earth Dynamics of Ministry of Natural Resource,Institute of Geology,Chinese Academy of Geological Sciences under contract No.J1901-16the Aoshan Science and Technology Innovation Project of Pilot National Laboratory for Marine Science and Technology(Qingdao)under contract No.2015ASKJ03-Seabed Resourcesthe Fund from the Korea Institute of Ocean Science and Technology(KIOST)under contract No.PE99741.
文摘The South Yellow Sea basin is filled with Mesozoic-Cenozoic continental sediments overlying pre-Palaeozoic and Mesozoic-Palaeozoic marine sediments.Conventional multi-channel seismic data cannot describe the velocity structure of the marine residual basin in detail,leading to the lack of a deeper understanding of the distribution and lithology owing to strong energy shielding on the top interface of marine sediments.In this study,we present seismic tomography data from ocean bottom seismographs that describe the NEE-trending velocity distributions of the basin.The results indicate that strong velocity variations occur at shallow crustal levels.Horizontal velocity bodies show good correlation with surface geological features,and multi-layer features exist in the vertical velocity framework(depth:0–10 km).The analyses of the velocity model,gravity data,magnetic data,multichannel seismic profiles,and drilling data showed that high-velocity anomalies(>6.5 km/s)of small(thickness:1–2 km)and large(thickness:>5 km)scales were caused by igneous complexes in the multi-layer structure,which were active during the Palaeogene.Possible locations of good Mesozoic and Palaeozoic marine strata are limited to the Central Uplift and the western part of the Northern Depression along the wide-angle ocean bottom seismograph array.Following the Indosinian movement,a strong compression existed in the Northern Depression during the extensional phase that caused the formation of folds in the middle of the survey line.This study is useful for reconstructing the regional tectonic evolution and delineating the distribution of the marine residual basin in the South Yellow Sea basin.
