Background The genomes of worldwide poultry breeds divergently selected for performance and other phenotypic traits may also be affected by,and formed due to,past and current admixture events.Adaptation to diverse env...Background The genomes of worldwide poultry breeds divergently selected for performance and other phenotypic traits may also be affected by,and formed due to,past and current admixture events.Adaptation to diverse environments,including acclimation to harsh climatic conditions,has also left selection footprints in breed genomes.Results Using the Chicken 50K_CobbCons SNP chip,we genotyped four divergently selected breeds:two aboriginal,cold tolerant Ushanka and Orloff Mille Fleur,one egg-type Russian White subjected to artificial selection for cold tolerance,and one meat-type White Cornish.Signals of selective sweeps were determined in the studied breeds using three methods:(1)assessment of runs of homozygosity islands,(2)F_(ST) based population differential analysis,and(3)haplotype differentiation analysis.Genomic regions of true selection signatures were identified by two or more methods or in two or more breeds.In these regions,we detected 540 prioritized candidate genes supplemented them with those that occurred in one breed using one statistic and were suggested in other studies.Amongst them,SOX5,ME3,ZNF536,WWP1,RIPK2,OSGIN2,DECR1,TPO,PPARGC1A,BDNF,MSTN,and beta-keratin genes can be especially mentioned as candidates for cold adaptation.Epigenetic factors may be involved in regulating some of these important genes(e.g.,TPO and BDNF).Conclusion Based on a genome-wide scan,our findings can help dissect the genetic architecture underlying various phenotypic traits in chicken breeds.These include genes representing the sine qua non for adaptation to harsh environments.Cold tolerance in acclimated chicken breeds may be developed following one of few specific gene expression mechanisms or more than one overlapping response known in cold-exposed individuals,and this warrants further investigation.展开更多
Sorghum[Sorghum bicolor(L.)Moench],a multipurpose C4 crop,is also a model species of the Poaceae family for plant research.During the process of domestication,the modification of seed dispersal mode is considered a ke...Sorghum[Sorghum bicolor(L.)Moench],a multipurpose C4 crop,is also a model species of the Poaceae family for plant research.During the process of domestication,the modification of seed dispersal mode is considered a key event,as the loss of seed shattering caused a significant increase in yield.In order to understand the seed shattering process in sorghum,we further studied eight previously identified divergent sorghum germplasm with different shattering degrees.We described their phenotypes in great detail,analyzed the histology of abscission zone,and conducted a gene co-expression analysis.We observed that the abscission layer of the most strong-shattering varieties began to differentiate before the 5-10 cm panicles development stage and was completely formed at flag leaf unfolding.The protective cells on the pedicels were also fully lignified by flowering.Through the weighted gene correlation network analysis(WGCNA),we mined for candidate genes involved in the abscission process at the heading stage.We found that these genes were mainly associated with such biological processes as hormone signal transmission(SORBI_3003G361300,SORBI_3006G216500,SORBI_3009G027800,SORBI_3007G077200),cell wall modification and degradation(SORBI_3002G205500,SORBI_3004G013800,SORBI_3010G022400,SORBI_3003G251800,SORBI_3003G254700,SORBI_3003G410800,SORBI_3009G162700,SORBI_3001G406700,SORBI_3004G042700,SORBI_3004G244600,SORBI_3001G099100),and lignin synthesis(SORBI_3004G220700,SORBI_3004G062500,SORBI_3010G214900,SORBI_3009G181800).Our study has provided candidate genes required for shedding for further study.We believe that function characterization of these genes may provide insight into our understanding of seed shattering process.展开更多
This research paper delves into the connection, between problem-solving and music. It’s a topic that has piqued the interest of scholars in fields, including science and neuroscience. The study explores how music can...This research paper delves into the connection, between problem-solving and music. It’s a topic that has piqued the interest of scholars in fields, including science and neuroscience. The study explores how music can influence our ability to think divergently which is an aspect of creative thinking. It builds upon advancements in methods to investigate the relationship between music and divergent thinking aiming to uncover potential correlations. Doing it offers insights into the interplay between artistic expression and cognitive innovation. This research combines an analysis of existing literature with data collected from a group of participants shedding light on how music impacts our capacity for creative thinking. It demonstrates that music plays a role as a catalyst, for stimulating and enhancing thinking abilities.展开更多
基金supported by the Russian Science Foundation within the Project No.21-66-00007support of the Russian Ministry of Science and Higher Education。
文摘Background The genomes of worldwide poultry breeds divergently selected for performance and other phenotypic traits may also be affected by,and formed due to,past and current admixture events.Adaptation to diverse environments,including acclimation to harsh climatic conditions,has also left selection footprints in breed genomes.Results Using the Chicken 50K_CobbCons SNP chip,we genotyped four divergently selected breeds:two aboriginal,cold tolerant Ushanka and Orloff Mille Fleur,one egg-type Russian White subjected to artificial selection for cold tolerance,and one meat-type White Cornish.Signals of selective sweeps were determined in the studied breeds using three methods:(1)assessment of runs of homozygosity islands,(2)F_(ST) based population differential analysis,and(3)haplotype differentiation analysis.Genomic regions of true selection signatures were identified by two or more methods or in two or more breeds.In these regions,we detected 540 prioritized candidate genes supplemented them with those that occurred in one breed using one statistic and were suggested in other studies.Amongst them,SOX5,ME3,ZNF536,WWP1,RIPK2,OSGIN2,DECR1,TPO,PPARGC1A,BDNF,MSTN,and beta-keratin genes can be especially mentioned as candidates for cold adaptation.Epigenetic factors may be involved in regulating some of these important genes(e.g.,TPO and BDNF).Conclusion Based on a genome-wide scan,our findings can help dissect the genetic architecture underlying various phenotypic traits in chicken breeds.These include genes representing the sine qua non for adaptation to harsh environments.Cold tolerance in acclimated chicken breeds may be developed following one of few specific gene expression mechanisms or more than one overlapping response known in cold-exposed individuals,and this warrants further investigation.
基金supported by the National Key Research and Development Program of China(2018YFD1000706,2018YFD1000700).
文摘Sorghum[Sorghum bicolor(L.)Moench],a multipurpose C4 crop,is also a model species of the Poaceae family for plant research.During the process of domestication,the modification of seed dispersal mode is considered a key event,as the loss of seed shattering caused a significant increase in yield.In order to understand the seed shattering process in sorghum,we further studied eight previously identified divergent sorghum germplasm with different shattering degrees.We described their phenotypes in great detail,analyzed the histology of abscission zone,and conducted a gene co-expression analysis.We observed that the abscission layer of the most strong-shattering varieties began to differentiate before the 5-10 cm panicles development stage and was completely formed at flag leaf unfolding.The protective cells on the pedicels were also fully lignified by flowering.Through the weighted gene correlation network analysis(WGCNA),we mined for candidate genes involved in the abscission process at the heading stage.We found that these genes were mainly associated with such biological processes as hormone signal transmission(SORBI_3003G361300,SORBI_3006G216500,SORBI_3009G027800,SORBI_3007G077200),cell wall modification and degradation(SORBI_3002G205500,SORBI_3004G013800,SORBI_3010G022400,SORBI_3003G251800,SORBI_3003G254700,SORBI_3003G410800,SORBI_3009G162700,SORBI_3001G406700,SORBI_3004G042700,SORBI_3004G244600,SORBI_3001G099100),and lignin synthesis(SORBI_3004G220700,SORBI_3004G062500,SORBI_3010G214900,SORBI_3009G181800).Our study has provided candidate genes required for shedding for further study.We believe that function characterization of these genes may provide insight into our understanding of seed shattering process.
文摘This research paper delves into the connection, between problem-solving and music. It’s a topic that has piqued the interest of scholars in fields, including science and neuroscience. The study explores how music can influence our ability to think divergently which is an aspect of creative thinking. It builds upon advancements in methods to investigate the relationship between music and divergent thinking aiming to uncover potential correlations. Doing it offers insights into the interplay between artistic expression and cognitive innovation. This research combines an analysis of existing literature with data collected from a group of participants shedding light on how music impacts our capacity for creative thinking. It demonstrates that music plays a role as a catalyst, for stimulating and enhancing thinking abilities.
