Mountains are important reservoirs of biodiversity and endemism on a global scale, but little is known about the altitudinal configuration of this diversity and its driving factors in arid mountains. We explored varia...Mountains are important reservoirs of biodiversity and endemism on a global scale, but little is known about the altitudinal configuration of this diversity and its driving factors in arid mountains. We explored variations in composition, diversity, cover,and life forms of vascular plants along a complete altitudinal gradient(1300-4000 m a.s.l) in Sierra de Velasco, an arid mountain in northwestern Argentina.We evaluated the influence of environmental variables on plant diversity and cover. Field sampling was conducted in the northern sector of the Sa. de Velasco,on the western slope in eight 50 m wide altitudinal bands at 400 m elevation intervals. We used rectangular plots(20 × 4 m;n:10/altitudinal band) to register the vascular plants of all the growth forms, and linear transects(20 m long.;n:30/altitudinal band) to quantify the vegetation cover using the point intercept method. Diversity was calculated using hill numbers.Data analysis included non-metric multidimensional scaling(NMDS), indicator species analysis,generalized linear models(GLMs), and variance partitioning analysis. A total of 232 species from 51families and 158 genera were registered. Species composition showed greater similarity at intermediate elevations. Plant diversity and cover exhibited a unimodal distribution, peaking at intermediate elevations(2100-2500 m). In contrast, life forms' distribution showed divergent patterns. Therophytes and succulents predominated at low altitudes,phanerophytes and hemicryptophytes at medium altitudes, and chamaephytes and geophytes at high altitudes. The altitudinal patterns of plant diversity and cover were primarily driven by climatic factors.Conservation efforts in the Sierra de Velasco should focus on the middle and upper zones due to their high biodiversity and vulnerability to climate change.展开更多
Understanding how and why assemblage dissimilarity changes along spatial gradient is a great challenge in ecology,because answers to these questions depend on the analytical types,dimensions,and components of beta div...Understanding how and why assemblage dissimilarity changes along spatial gradient is a great challenge in ecology,because answers to these questions depend on the analytical types,dimensions,and components of beta diversity we concerned.To obtain a comprehensive understanding of assemblage dissimilarity and its implications for biodiversity conservation in the Himalayas,we explored the elevational patterns and determinants of beta diversity and its turnover and nestedness components of pairwise and multiple types and taxonomic and phylogenetic dimensions simultaneously.Patterns of beta diversity and their components of different types and dimensions were calculated based on 96 sampling quadrats along an 1800-5400 m elevational gradient.We examined whether and how these patterns differed from random expectations using null models.Furthermore,we used random forest methods to quantify the role of environmental variables representing climate,topography,and human disturbance in determining these patterns.We found that beta diversity and its turnover component,regardless of its types and dimensions,shown a hump-shaped elevational patterns.Both pairwise and multiple phylogenetic beta diversity were remarkably lower than their taxonomic counterpart.These patterns were significantly less than random expectation and were mostly associated with climate variables.In summary,our results suggested that assemblage dissimilarity of seed plants was mostly originate from the replacement of closely related species determined by climate-driven environmental filtering.Accordingly,conservation efforts should better cover elevations with different climate types to maximalize biodiversity conservation,rather than only focus on elevations with highest species richness.Our study demonstrated that comparisons of beta diversity of different types,dimensions,and components could be conductive to consensus on the origin and mechanism of assemblage dissimilarity.展开更多
The response of plant functional diversity to external disturbances not only effectively predicts changes in the ecosystem but it also reflects how plant communities use external environmental resources.However,resear...The response of plant functional diversity to external disturbances not only effectively predicts changes in the ecosystem but it also reflects how plant communities use external environmental resources.However,research on how different herbivore assemblages affect plant functional diversity is limited.Therefore,this study systematically explored the effects of three typical herbivore assemblages(yak grazing,Tibetan sheep grazing,and mixed grazing by yaks and Tibetan sheep)on species richness,plant functional diversity,and soil physicochemical properties in alpine grasslands on the Qinghai-Tibet Plateau,China.This study further investigated the primary mechanisms driving the changes in plant functional diversity.The results indicate four key aspects of this system:(1)Grazing significantly enhanced plant functional diversity,particularly when the mixed grazing by yaks and Tibetan sheep was applied at a ratio of 1:2.This ratio showed the most substantial improvement in the functional dispersion index and Rao's quadratic entropy index.(2)Compared to enclosed treatments,grazing increased species richness and β-diversity,contributing to higher plant functional diversity.(3)Grazing treatments affected various plant traits,such as reducing plant community height and leaf thickness while increasing specific leaf area.However,the impact on plant functional diversity was most pronounced under the mixed grazing by yaks and Tibetan sheep at a ratio of 1:2.(4)Speciesα-diversity was positively correlated with plant functional diversity.Changes in plant functional diversity were primarily regulated by variations in soil physicochemical properties.Specifically,increases in soil available nitrogen significantly promoted changes in plant functional diversity,while increases in soil available potassium and bulk density had a significant inhibitory effect on these changes.Long-term grazing significantly reduced the height of plant communities in alpine meadows,while a balanced mixture of yak and Tibetan sheep grazing,especially at a ratio of 1:2,enhanced plant functional diversity the most.This suggests that,under these conditions,the use of external environmental resources by the plant community is optimized.展开更多
The utilization of palynological data for plant diversity reconstructions offers notable advantages in addressing the discontinuity of plant fossils in the stratigraphic record. However, additional studies of modern p...The utilization of palynological data for plant diversity reconstructions offers notable advantages in addressing the discontinuity of plant fossils in the stratigraphic record. However, additional studies of modern processes are required to validate or refine the accuracy of diversity results obtained from palynological data. In this study, we used a modern pollen dataset of China to compare the accuracy of plant diversity reconstructions using five different palynological diversity indices(i.e., the pollen species number, Berger-Parker index, Simpson diversity index, Hill index, and Shannon-Wiener index) over a large spatial scale. We then identified climate factors that are most strongly correlated with these patterns of plant diversity. We found that the index that most accurately reflects plant diversity is the Shannon-Wiener index. Our analyses indicated that the most effective indices at reflecting plant diversity are the Shannon-Wiener index and Berger-Parker index. Numerical analysis revealed that palynological diversity(measured using the Shannon-Wiener index) was strongly correlated with climatic parameters, in particular average temperature in the coldest month and annual precipitation,suggesting these factors may be primary determinants of plant diversity distribution. We also found that a threshold value of the normalized Shannon-Wiener index(NH = 0.4) approximately aligns with the contour line specifying 400 mm annual precipitation, serving as a rudimentary indicator for assessing plant diversity in arid versus humid climates. This study suggests that pollen diversity indices have remarkable potential for quantitatively reconstructing paleoclimatic parameters.展开更多
Urban and peri-urban forests and trees play an important role by providing ecosystem services. Vegetation in sacred and cult places is among the useful forests and trees, but their characteristics are not well-documen...Urban and peri-urban forests and trees play an important role by providing ecosystem services. Vegetation in sacred and cult places is among the useful forests and trees, but their characteristics are not well-documented. It’s necessary to assess the potential of biodiversity conservation in sacred and cult places. This research aimed to enhance knowledge of the woody diversity in cult places in Ziguinchor. To achieve this, woody vegetation surveys were conducted to determine floristic composition and, diversity and structural parameters of woody vegetation. A total of 89 species belonging to 71 genera and 33 families were recorded, Fabaceae and Moraceae dominated in cemeteries and parishes, while Arecaceae and Euphorbiaceae were prevalent in mosques. Tree diversity varied according to cult places. Parishes recorded significatively higher diversity (2.2 ± 0.18) than cemeteries (1.59 ± 0.13) and mosques (1.07 ± 0.36). Cult places inflenced significatly the structural parameters. Tree density was higher in cemeteries (482.26 ± 302.71 indiv/ha) compared to parishes (197.61 ± 67.14 indiv/ha) and mosques (32.34 ± 4.89 indiv/ha). Mosques were characterized by higher canopy cover (25.43 ± 11.65 m2/ha), larger (83.72 ± 20.09 cm) and taller (16.28 ± 1.28 m) trees. Natural regeneration was also strongest in cemeteries (91.69% ± 3.715%), followed by parishes (62.22% ± 8.56%) and mosques (38.82% ± 14.5%). The cult places play an important ecological role in biodiversity conservation in urban and peri-urban areas.展开更多
Biodiversity has become a terminology familiar to virtually every citizen in modern societies.It is said that ecology studies the economy of nature,and economy studies the ecology of humans;then measuring biodiversity...Biodiversity has become a terminology familiar to virtually every citizen in modern societies.It is said that ecology studies the economy of nature,and economy studies the ecology of humans;then measuring biodiversity should be similar with measuring national wealth.Indeed,there have been many parallels between ecology and economics,actually beyond analogies.For example,arguably the second most widely used biodiversity metric,Simpson(1949)’s diversity index,is a function of familiar Gini-index in economics.One of the biggest challenges has been the high“diversity”of diversity indexes due to their excessive“speciation”-there are so many indexes,similar to each country’s sovereign currency-leaving confused diversity practitioners in dilemma.In 1973,Hill introduced the concept of“numbers equivalent”,which is based on Renyi entropy and originated in economics,but possibly due to his abstruse interpretation of the concept,his message was not widely received by ecologists until nearly four decades later.What Hill suggested was similar to link the US dollar to gold at the rate of$35 per ounce under the Bretton Woods system.The Hill numbers now are considered most appropriate biodiversity metrics system,unifying Shannon,Simpson and other diversity indexes.Here,we approach to another paradigmatic shift-measuring biodiversity on ecological networks-demonstrated with animal gastrointestinal microbiomes representing four major invertebrate classes and all six vertebrate classes.The network diversity can reveal the diversity of species interactions,which is a necessary step for understanding the spatial and temporal structures and dynamics of biodiversity across environmental gradients.展开更多
MAX series materials,as non-van der Waals layered multi-element compounds,contribute remarkable regulated properties and functional dimension,combining the features of metal and ceramic materials due to their inherent...MAX series materials,as non-van der Waals layered multi-element compounds,contribute remarkable regulated properties and functional dimension,combining the features of metal and ceramic materials due to their inherently laminated crystal structure that Mn+1Xn slabs are intercalated with A element layers.Oriented to the functional requirements of information,intelligence,electrification,and aerospace in the new era,how to accelerate MAX series materials into new quality productive forces?The systematic enhancement of knowledge about MAX series materials is intrinsic to understanding its low-dimensional geometric structure characteristics,and physical and chemical properties,revealing the correlation of composition,structure,and function and further realizing rational design based on simulation and prediction.Diversity also brings complexity to MAX materials research.This review provides substantial tabular information on(Ⅰ)MAX’s research timeline from 1960 to the present,(Ⅱ)structure diversity and classification convention,(Ⅲ)synthesis route exploration,(Ⅳ)prediction based on theory and machine learning,(Ⅴ)properties,and(Ⅵ)functional applications.Herein,the researchers can quickly locate research content and recognize connections and differences of MAX series materials.In addition,the research challenges for the future development of MAX series materials are highlighted.展开更多
Plant diversity plays a crucial role in maintaining the stability of ecological function.Based on field investigations and experimental analyses,artificial grassland plots with varying sowing times,adjacent natural gr...Plant diversity plays a crucial role in maintaining the stability of ecological function.Based on field investigations and experimental analyses,artificial grassland plots with varying sowing times,adjacent natural grassland(CK),and open-pit coal mine dumps in the Muli mining area of Qinghai Province were selected as research subjects for this study.The characteristics of plant diversity and community stability were measured and analyzed,and the relationships between these factors and their influencing variables were evaluated.The results indicated significant differences in the vegetation community characteristics and plant diversity among the various grasslands.Coverage,aboveground biomass,belowground biomass,soil total nitrogen,and soil total carbon were the highest when the growth period was three years.Plant diversity and community stability in the natural grassland were significantly greater than that in the artificial grassland and open-pit coal mine dumps.A significant positive correlation was observed between plant diversity and community stability,suggesting that plant diversity can serve as an index of community stability.The order of stability,from highest to lowest,was CK>11a>10a>8a>9a>6a>7a>3a>2a>1a>0a.Years were identified as the primary factors affecting plant diversity and community stability by altering the soil pH.These results elucidate the relationships and driving mechanisms between plant diversity and community stability in grasslands,providing a scientific basis for maintaining community stability in artificial grassland ecosystems in alpine mining areas.展开更多
Two protected sites located on the outskirts of the Sena Oura National Park (PNSO) in West Mayo-Kebbi cover an area of 1800 m2 is pattern choose in pastoral enclave in both village. This study was undertaken to highli...Two protected sites located on the outskirts of the Sena Oura National Park (PNSO) in West Mayo-Kebbi cover an area of 1800 m2 is pattern choose in pastoral enclave in both village. This study was undertaken to highlight the floristic diversity of the herbaceous and woody vegetation on these sites in the offing to know the ability of charge into UBT that most support the park peripheral. It took place on two experimental sites on a natural course in two villages: Wazetelan and Massang. The approach used for the study was a survey using the systematic sampling method and a 30 m × 30 m plot. The survey consisted in listing all the taxa in a floristically homogeneous plot, each assigned the Braun-Blanquet dominance abundance coefficient. These surveys revealed a floristic richness of 73 species, 58 genera, including 46 herbaceous and 26 woody species. The Shannon result gives H1' = 0.12 bit for herbaceous species and H2' = 0.44 bit for woody species, meaning that the herbaceous and woody populations of all the surveys have a very low species diversity, as H' < 3 according to the Shannon index assessment threshold. Herbaceous species are divided into 13 families and 33 genera. The most represented families are Fabaceae (27.3%) and Poaceae (21.9%). Most of the other families (1.3%) have only one species, if any. Herbaceous species are divided into 33 genera grouped into 13 families. The most represented families are Fabaces (16 species), 34%, and Poaceae (12 species), 26%. The 26 woody species, most of which come from itinerant surveys, are distributed across 24 genera and 12 families, the most important of which is Fabaceae with 09 species (34.6%). This floristic assessment, in terms of quantity and quality, has enabled us to estimate the carrying capacity of the two pastoral enclaves in Dari and Goumadji cantons, and to guide the government’s actions with regard to rangeland management.展开更多
[Objectives] To investigate the species diversity of wood-decaying fungi in karst regions of southwest China. [Methods] The karst core regions of southwest China, specifically Guizhou, Guangxi, and Yunnan, were invest...[Objectives] To investigate the species diversity of wood-decaying fungi in karst regions of southwest China. [Methods] The karst core regions of southwest China, specifically Guizhou, Guangxi, and Yunnan, were investigated for the first time to analyze the species diversity characteristics of wood-decaying fungi in this area. This analysis was conducted through a comprehensive 5-year field investigation and systematic identification process. [Results] The wood-decaying fungi exhibited a distinctive species composition and distribution pattern within karst habitats, encompassing significant groups such as Polyporaceae and Hymenochaetaceae. Furthermore, these fungi demonstrated varying functional characteristics across the two ecological types of standing tree decay and wood decay. It was observed that wood-decaying fungi had a significant impact on the material cycle within karst ecosystems by degrading lignin and cellulose. Furthermore, the distribution of species diversity was closely associated with the characteristics of karst geomorphology and the types of vegetation. [Conclusions] This study not only addresses the lack of background data regarding wood-decaying fungi resources in karst regions, but also elucidates the maintenance mechanisms of fragile ecosystems from the perspective of decomposers. It provides a scientific foundation for biodiversity conservation, the prevention and control of forest diseases, and sustainable ecological management in karst regions.展开更多
An inventory of Rhynchophorus species was carried out to determine their diversity, biogeographical variability and morphometrics. A shotgun trapping method was used at nine sites in three districts over a four-month ...An inventory of Rhynchophorus species was carried out to determine their diversity, biogeographical variability and morphometrics. A shotgun trapping method was used at nine sites in three districts over a four-month period, identifying three species: R. quadrangulus, R. phoenicis, R. ferrugineus and a probable variant of R. phoenicis. Of these species, R. phoenicis stands out as the most widespread palm weevil, while the probable variant of R. phoenicis is considered the rarest subspecies in the Maniema region. The color of the head and elytra is a criterion for distinguishing the different species of Rhynchophorus spp. Morphological criteria indicate that the probable subspecies of R. phoenicis is the largest palm weevil in the Maniema region and even globally. It is followed by R. quadrangulus and, by far, by R. phoenicis. The smallest palm weevil in Maniema is R. ferrugineus. Moreover, these criteria reveal that, for all three species identified, the female is generally larger than the male. This study has the merit of extending the distribution of R. ferrugineus from the Maghreb to the central East of the DRC, and highlighting a subspecies of R. phoenicis. Recognition of the sexes on the basis of the shape of the tip of the abdomen (oval in the male and flat in the female) is an additional contribution.展开更多
Herbaceous plants are an essential component of forest diversity and driver of ecosystem processes.However,because the growth forms and life-history strategies of herbaceous plants differ from those of woody plants,it...Herbaceous plants are an essential component of forest diversity and driver of ecosystem processes.However,because the growth forms and life-history strategies of herbaceous plants differ from those of woody plants,it is unclear whether the mechanisms that drive patterns plant diversity and community structure in these two plant groups are the same.In this study,we determined whether herb and woody plant communities have similar patterns and drivers of alpha-and beta-diversity.We compared species richness,distribution,and abundance of herbs to woody seedlings in a 20-ha Donglingshan warmtemperate forest(Donglingshan FDP),China.We also determined whether variation in patterns of species richness and composition are better explained by environmental or spatial variables.Herbaceous plants accounted for 72%of all species(81 herbaceous,31 woody)recorded.Alpha-and beta-diversity were higher in herbs than in woody seedlings.Although alpha-diversity of herbs and woody seedlings was not correlated across the site,the local-site contributions to beta-diversity for herbs and woody seedlings were negatively correlated.Habitat type explained slightly more variation in herb community composition than in woody seedling composition,with the highest diversity in the low-elevation slope.Environmental variables explained the variation in species richness and composition more in herbaceous plants than in woody seedlings.Our results indicate that different mechanisms drive variation in the herb and woody seedling communities,with herbs exhibiting greater environmental sensitivity and habitat dependence.These findings contribute to the better understanding of herbaceous plant diversity and composition in forest communities.展开更多
Plant species diversity is one of the most widely used indicators in ecosystem management.The relation of species diversity with the size of the sample plot has not been fully determined for Oriental beech forests(Fag...Plant species diversity is one of the most widely used indicators in ecosystem management.The relation of species diversity with the size of the sample plot has not been fully determined for Oriental beech forests(Fagus orientalis Lipsky),a widespread species in the Hyrcanian region.Assessing the impacts of plot size on species diversity is fundamental for an ecosystem-based approach to forest management.This study determined the relation of species diversity and plot size by investigating species richness and abundance of both canopy and forest floor.Two hundred and fifty-six sample plots of 625 m^(2) each were layout in a grid pattern across 16 ha.Base plots(25 m×25 m)were integrated in different scales to investigate the effect of plot size on species diversity.The total included nine plots of 0.063,0.125,0.188,0.250,0.375,0.500,0.563,0.750 and 1 ha.Ten biodiversity indices were calculated.The results show that species richness in the different plot sizes was less than the actual value.The estimated value of the Simpson species diversity index was not significantly different from actual values for both canopy and forest floor diversity.The coefficient of variation of this index for the 1-ha sample plot showed the lowest amount across different plot sizes.Inverse Hill species diversity was insignificant difference across different plot sizes with an area greater than 0.500 ha.The modified Hill evenness index for the 1-ha sample size was a correct estimation of the 16-ha for both canopy and forest floor;however,the precision estimation was higher for the canopy layer.All plots greater than 0.250-ha provided an accurate estimation of the Camargo evenness index for forest floor species,but was inaccurate across different plot sizes for the canopy layer.The results indicate that the same plot size did not have the same effect across species diversity measurements.Our results show that correct estimation of species diversity measurements is related to the selection of appropriate indicators and plot size to increase the accuracy of the estimate so that the cost and time of biodiversity management may be reduced.展开更多
Wetland degradation is an escalating global challenge with profound impacts on animal diversity,particularly during successional processes.Birds,as highly mobile and environmentally sensitive organisms,serve as effect...Wetland degradation is an escalating global challenge with profound impacts on animal diversity,particularly during successional processes.Birds,as highly mobile and environmentally sensitive organisms,serve as effective indicators of ecological change.While previous studies have primarily focused on local community structures and species diversity during a specific season,there is a need to extend the research timeframe and explore broader spatial variations.Additionally,expanding from simple species diversity indices to more multidimensional diversity indices would provide a more comprehensive understanding of wetland health and resilience.To address these gaps,we investigated the effects of wetland degradation on bird diversity across taxonomic,phylogenetic,and functional dimensions in the Zoige Wetland,a plateau meadow wetland biodiversity hotspot.Surveys were conducted during both breeding(summer)and overwintering(winter)seasons across 20 transects in 5 sampling areas,representing 4 degradation levels(pristine,low,medium,and high).Our study recorded a total of 106 bird species from 32 families and 14 orders,revealing distinct seasonal patterns in bird community composition and diversity.Biodiversity indices were significantly higher in pristine and low-degraded wetlands,particularly benefiting waterfowl(Anseriformes,Ciconiiformes)and wading birds(Charadriiformes)in winter,when these areas provided superior food resources and habitat conditions.In contrast,medium and highly degraded wetlands supported increased numbers of terrestrial birds(Passeriformes)and raptors(Accipitriformes,Falconiformes).Seasonal differences in taxonomic,phylogenetic,and functional diversity indices highlighted the contrasting ecological roles of wetlands during breeding and overwintering periods.Furthermore,indicator species analysis revealed key species associated with specific degradation levels and seasons,providing valuable insights into wetland health.This study underscores the importance of spatiotemporal dynamics in understanding avian responses to wetland degradation.By linking seasonal patterns of bird diversity to habitat conditions,our findings contribute to conservation efforts and provide a framework for assessing wetland degradation and its ecological impacts.展开更多
Patterns and drivers of species–genetic diversity correlations(SGDCs)have been broadly examined across taxa and ecosystems and greatly deepen our understanding of how biodiversity is maintained.However,few studies ha...Patterns and drivers of species–genetic diversity correlations(SGDCs)have been broadly examined across taxa and ecosystems and greatly deepen our understanding of how biodiversity is maintained.However,few studies have examined the role of canopy structural heterogeneity,which is a defining feature of forests,in shaping SGDCs.Here,we determine what factors contribute toα-andβ-species–genetic diversity correlations(i.e.,α-andβ-SGDCs)in a Chinese subtropical forest.For this purpose,we used neutral molecular markers to assess genetic variation in almost all adult individuals of the dominant tree species,Lithocarpus xylocarpus,across plots in the Ailaoshan National Natural Reserve.We also quantified microhabitat variation by quantifying canopy structure heterogeneity with airborne laser scanning on 201-ha subtropical forest plots.We found that speciesα-diversity was negatively correlated with geneticα-diversity.Canopy structural heterogeneity was positively correlated with speciesα-diversity but negatively correlated with geneticα-diversity.These contrasting effects contributed to the formation of a negativeα-SGDC.Further,we found that canopy structural heterogeneity increases speciesα-diversity and decreases geneticα-diversity by reducing the population size of target species.Speciesβ-diversity,in contrast,was positively correlated with geneticβ-diversity.Differences in canopy structural heterogeneity between plots had non-linear parallel effects on the two levels ofβ-diversity,while geographic distance had a relatively weak effect onβ-SGDC.Our study indicates that canopy structural heterogeneity simultaneously affects plot-level community species diversity and population genetic diversity,and species and genetic turnover across plots,thus drivingα-andβ-SGDCs.展开更多
Coastal ecosystems are plagued by high levels of microplastic pollution.Conducting baseline surveys is crucial to comprehend the distribution and influencing factors of this pollution.The present study investigates th...Coastal ecosystems are plagued by high levels of microplastic pollution.Conducting baseline surveys is crucial to comprehend the distribution and influencing factors of this pollution.The present study investigates the spatiotemporal variation and diversity of microplastic on the coastal beaches in Xiamen City,China,considering the combined effects of seasons,human activities,and physicochemical properties of sediments.It is detected that the abundance of microplastics in Xiamen beaches was 0.271±0.01 items/g.The abundance of microplastics in dry season was significantly higher than in rainy season.In terms of spatial variation,the beaches that attracted a larger number of tourists exhibited significantly higher microplastic abundance.The temporal pattern of microplastic distribution on different beaches varied greatly due to region-specific human activities(e.g.,mangrove restoration project)and sedimentary properties(e.g.,bulk density).When the assemblage of microplastics in the coastal area was viewed as a biological community,the Shannon-Wiener index and Pielou's index were higher in rainy season and in the beaches with high intensity of tourist activities,which suggests that the human activities and the surface runoff may contribute to the diversity of microplastics on coastal beaches.Future investigations are encouraged to combine controlled experiments and long-term monitoring at multiple scales to elucidate the underlying mechanisms and factors associated with microplastic pollution in coastal zone.展开更多
Microsatellite markers with polymorphic advantages are widely used in the exploration and utilization of marine fishery resources.In this study,16 polymorphic microsatellite markers were used to evaluate the diversity...Microsatellite markers with polymorphic advantages are widely used in the exploration and utilization of marine fishery resources.In this study,16 polymorphic microsatellite markers were used to evaluate the diversity and population structure of Setipinna tenuifilis,a nearshore fish of economic and ecological value in the western Pacific Ocean and Indian Ocean.The genetic diversity of S.tenuifilis showed a high level[mean Na(number of alleles)is 23.25,mean Ho(observed heterozygosity)is 0.639,mean R_(a)(allelic richness)is 11.625,and the polymorphic information content(PIC)is 0.844]similar to other Clupeiformes fish species.The nine wild S.tenuifilis populations showed significant differentiation(F_(ST)ranging from 0.00384 to 0.19346)and were generally divided into southern and northern populations based on genetic structure,except for the Zhoushan population,which exhibited genetic mixture.Our results provide fundamental but significant genetic insights for the management and conservation of S.tenuifilis fishery resources.展开更多
Viral infectious diseases,characterized by their intricate nature and wide-ranging diversity,pose substantial challenges in the domain of data management.The vast volume of data generated by these diseases,spanning fr...Viral infectious diseases,characterized by their intricate nature and wide-ranging diversity,pose substantial challenges in the domain of data management.The vast volume of data generated by these diseases,spanning from the molecular mechanisms within cells to large-scale epidemiological patterns,has surpassed the capabilities of traditional analytical methods.In the era of artificial intelligence(AI)and big data,there is an urgent necessity for the optimization of these analytical methods to more effectively handle and utilize the information.Despite the rapid accumulation of data associated with viral infections,the lack of a comprehensive framework for integrating,selecting,and analyzing these datasets has left numerous researchers uncertain about which data to select,how to access it,and how to utilize it most effectively in their research.This review endeavors to fill these gaps by exploring the multifaceted nature of viral infectious diseases and summarizing relevant data across multiple levels,from the molecular details of pathogens to broad epidemiological trends.The scope extends from the micro-scale to the macro-scale,encompassing pathogens,hosts,and vectors.In addition to data summarization,this review thoroughly investigates various dataset sources.It also traces the historical evolution of data collection in the field of viral infectious diseases,highlighting the progress achieved over time.Simultaneously,it evaluates the current limitations that impede data utilization.Furthermore,we propose strategies to surmount these challenges,focusing on the development and application of advanced computational techniques,AI-driven models,and enhanced data integration practices.By providing a comprehensive synthesis of existing knowledge,this review is designed to guide future research and contribute to more informed approaches in the surveillance,prevention,and control of viral infectious diseases,particularly within the context of the expanding big-data landscape.展开更多
Background Mobile element variants(MEVs)have a significant and complex impact on genomic diversity and phe-notypic traits.However,the quantity,distribution,and relationship with gene expression and complex traits of M...Background Mobile element variants(MEVs)have a significant and complex impact on genomic diversity and phe-notypic traits.However,the quantity,distribution,and relationship with gene expression and complex traits of MEVs in the pig genome remain poorly understood.Results We constructed the most comprehensive porcine MEV library based on high-depth whole genome sequencing(WGS)data from 747 pigs across 59 breeds worldwide.This database identified a total of 147,993 poly-morphic MEVs,including 121,099 short interspersed nuclear elements(SINEs),26,053 long interspersed nuclear elements(LINEs),802 long terminal repeats(LTRs),and 39 other transposons,among which 54%are newly discovered.We found that MEVs are unevenly distributed across the genome and are strongly influenced by negative selec-tion effects.Importantly,we identified 514,530,and 584 candidate MEVs associated with population differentiation,domestication,and breed formation,respectively.For example,a significantly differentiated MEV is located in the ATRX intron between Asian and European pigs,whereas ATRX is also differentially expressed between Asian and European pigs in muscle tissue.In addition,we identified 4,169 expressed MEVs(eMEVs)significantly associated with gene expression and 6,914 splicing MEVs(sMEVs)associated with gene splicing based on RNA-seq data from 266 porcine liver tissues.These eMEVs and sMEVs explain 6.24%and 9.47%,respectively,of the observed cis-heritability and high-light the important role of MEVs in the regulation of gene expression.Finally,we provide a high-quality SNP–MEV reference haplotype panel to impute MEV genotypes from genome-wide SNPs.Notably,we identified a candidate MEV significantly associated with total teat number,demonstrating the functionality of this reference panel.Conclusions The present investigation demonstrated the importance of MEVs in pigs in terms of population diversity,gene expression and phenotypic traits,which may provide useful resources and theoretical support for pig genetics and breeding.展开更多
Marine fish diversity in the Beibu Gulf from 2014 to 2022 was analyzed,using various methods including at-sea fisheries resource surveys,fishing port surveys,underwater survey techniques,and data from literature,books...Marine fish diversity in the Beibu Gulf from 2014 to 2022 was analyzed,using various methods including at-sea fisheries resource surveys,fishing port surveys,underwater survey techniques,and data from literature,books,and databases,from which 1059 fish species across 40 orders,166 families,and 503 genera were identified.Among them,Acanthuriformes displayed the highest diversity,followed by Carangiformes and Perciformes.Notably,eight alien species were found in the Beibu Gulf.The International Union for Conservation of Nature(IUCN)Red List assessment revealed 51threatened species,primarily cartilaginous fish.Taxonomic changes affected 88.70%of species due to classification adjustments,misidentifications,and junior synonymy.This study contributed new data of the gulf,including one additional order,six new families,34 new genera,and 81 new species,emphasizing the dynamic nature of marine ecosystems.Fish diversity in the gulf was relatively lower than the broader South China Sea,attributed to limited habitats and survey methods.Different survey methods,such as gill nets,trap nets,and underwater cameras,yielded varying results.Ocean currents may have transported deep-sea species into the Beibu Gulf,leading to accidental records.Research gaps exist in unexplored areas,warranting further investigation.Therefore,the Beibu Gulf hosts significant marine biodiversity,but taxonomic challenges and undiscovered species require new research and conservation efforts.展开更多
文摘Mountains are important reservoirs of biodiversity and endemism on a global scale, but little is known about the altitudinal configuration of this diversity and its driving factors in arid mountains. We explored variations in composition, diversity, cover,and life forms of vascular plants along a complete altitudinal gradient(1300-4000 m a.s.l) in Sierra de Velasco, an arid mountain in northwestern Argentina.We evaluated the influence of environmental variables on plant diversity and cover. Field sampling was conducted in the northern sector of the Sa. de Velasco,on the western slope in eight 50 m wide altitudinal bands at 400 m elevation intervals. We used rectangular plots(20 × 4 m;n:10/altitudinal band) to register the vascular plants of all the growth forms, and linear transects(20 m long.;n:30/altitudinal band) to quantify the vegetation cover using the point intercept method. Diversity was calculated using hill numbers.Data analysis included non-metric multidimensional scaling(NMDS), indicator species analysis,generalized linear models(GLMs), and variance partitioning analysis. A total of 232 species from 51families and 158 genera were registered. Species composition showed greater similarity at intermediate elevations. Plant diversity and cover exhibited a unimodal distribution, peaking at intermediate elevations(2100-2500 m). In contrast, life forms' distribution showed divergent patterns. Therophytes and succulents predominated at low altitudes,phanerophytes and hemicryptophytes at medium altitudes, and chamaephytes and geophytes at high altitudes. The altitudinal patterns of plant diversity and cover were primarily driven by climatic factors.Conservation efforts in the Sierra de Velasco should focus on the middle and upper zones due to their high biodiversity and vulnerability to climate change.
基金supported by the National Natural Science Foundation of China(grant number 31901109)Guangdong Basic and Applied Basic Research Foundation(grant number 2021A1515110744).
文摘Understanding how and why assemblage dissimilarity changes along spatial gradient is a great challenge in ecology,because answers to these questions depend on the analytical types,dimensions,and components of beta diversity we concerned.To obtain a comprehensive understanding of assemblage dissimilarity and its implications for biodiversity conservation in the Himalayas,we explored the elevational patterns and determinants of beta diversity and its turnover and nestedness components of pairwise and multiple types and taxonomic and phylogenetic dimensions simultaneously.Patterns of beta diversity and their components of different types and dimensions were calculated based on 96 sampling quadrats along an 1800-5400 m elevational gradient.We examined whether and how these patterns differed from random expectations using null models.Furthermore,we used random forest methods to quantify the role of environmental variables representing climate,topography,and human disturbance in determining these patterns.We found that beta diversity and its turnover component,regardless of its types and dimensions,shown a hump-shaped elevational patterns.Both pairwise and multiple phylogenetic beta diversity were remarkably lower than their taxonomic counterpart.These patterns were significantly less than random expectation and were mostly associated with climate variables.In summary,our results suggested that assemblage dissimilarity of seed plants was mostly originate from the replacement of closely related species determined by climate-driven environmental filtering.Accordingly,conservation efforts should better cover elevations with different climate types to maximalize biodiversity conservation,rather than only focus on elevations with highest species richness.Our study demonstrated that comparisons of beta diversity of different types,dimensions,and components could be conductive to consensus on the origin and mechanism of assemblage dissimilarity.
基金financially supported by the National Natural Science Foundation of China(U20A2007 and 32160343)the Open Project of Key Laboratory of the Alpine Grassland Ecology in the Three Rivers Region(Qinghai University),Ministry of Education of China(2023-SJY-KF-02)the West Light Foundation of the Chinese Academy of Sciences。
文摘The response of plant functional diversity to external disturbances not only effectively predicts changes in the ecosystem but it also reflects how plant communities use external environmental resources.However,research on how different herbivore assemblages affect plant functional diversity is limited.Therefore,this study systematically explored the effects of three typical herbivore assemblages(yak grazing,Tibetan sheep grazing,and mixed grazing by yaks and Tibetan sheep)on species richness,plant functional diversity,and soil physicochemical properties in alpine grasslands on the Qinghai-Tibet Plateau,China.This study further investigated the primary mechanisms driving the changes in plant functional diversity.The results indicate four key aspects of this system:(1)Grazing significantly enhanced plant functional diversity,particularly when the mixed grazing by yaks and Tibetan sheep was applied at a ratio of 1:2.This ratio showed the most substantial improvement in the functional dispersion index and Rao's quadratic entropy index.(2)Compared to enclosed treatments,grazing increased species richness and β-diversity,contributing to higher plant functional diversity.(3)Grazing treatments affected various plant traits,such as reducing plant community height and leaf thickness while increasing specific leaf area.However,the impact on plant functional diversity was most pronounced under the mixed grazing by yaks and Tibetan sheep at a ratio of 1:2.(4)Speciesα-diversity was positively correlated with plant functional diversity.Changes in plant functional diversity were primarily regulated by variations in soil physicochemical properties.Specifically,increases in soil available nitrogen significantly promoted changes in plant functional diversity,while increases in soil available potassium and bulk density had a significant inhibitory effect on these changes.Long-term grazing significantly reduced the height of plant communities in alpine meadows,while a balanced mixture of yak and Tibetan sheep grazing,especially at a ratio of 1:2,enhanced plant functional diversity the most.This suggests that,under these conditions,the use of external environmental resources by the plant community is optimized.
基金co-supported by the National Key Research and Development Program of China(2022YFF0800800)the National Natural Science Foundation of China(41988101-01,42130205)the Second Tibetan Plateau Scientific Expedition and Research Program(2019QZKK0707)。
文摘The utilization of palynological data for plant diversity reconstructions offers notable advantages in addressing the discontinuity of plant fossils in the stratigraphic record. However, additional studies of modern processes are required to validate or refine the accuracy of diversity results obtained from palynological data. In this study, we used a modern pollen dataset of China to compare the accuracy of plant diversity reconstructions using five different palynological diversity indices(i.e., the pollen species number, Berger-Parker index, Simpson diversity index, Hill index, and Shannon-Wiener index) over a large spatial scale. We then identified climate factors that are most strongly correlated with these patterns of plant diversity. We found that the index that most accurately reflects plant diversity is the Shannon-Wiener index. Our analyses indicated that the most effective indices at reflecting plant diversity are the Shannon-Wiener index and Berger-Parker index. Numerical analysis revealed that palynological diversity(measured using the Shannon-Wiener index) was strongly correlated with climatic parameters, in particular average temperature in the coldest month and annual precipitation,suggesting these factors may be primary determinants of plant diversity distribution. We also found that a threshold value of the normalized Shannon-Wiener index(NH = 0.4) approximately aligns with the contour line specifying 400 mm annual precipitation, serving as a rudimentary indicator for assessing plant diversity in arid versus humid climates. This study suggests that pollen diversity indices have remarkable potential for quantitatively reconstructing paleoclimatic parameters.
文摘Urban and peri-urban forests and trees play an important role by providing ecosystem services. Vegetation in sacred and cult places is among the useful forests and trees, but their characteristics are not well-documented. It’s necessary to assess the potential of biodiversity conservation in sacred and cult places. This research aimed to enhance knowledge of the woody diversity in cult places in Ziguinchor. To achieve this, woody vegetation surveys were conducted to determine floristic composition and, diversity and structural parameters of woody vegetation. A total of 89 species belonging to 71 genera and 33 families were recorded, Fabaceae and Moraceae dominated in cemeteries and parishes, while Arecaceae and Euphorbiaceae were prevalent in mosques. Tree diversity varied according to cult places. Parishes recorded significatively higher diversity (2.2 ± 0.18) than cemeteries (1.59 ± 0.13) and mosques (1.07 ± 0.36). Cult places inflenced significatly the structural parameters. Tree density was higher in cemeteries (482.26 ± 302.71 indiv/ha) compared to parishes (197.61 ± 67.14 indiv/ha) and mosques (32.34 ± 4.89 indiv/ha). Mosques were characterized by higher canopy cover (25.43 ± 11.65 m2/ha), larger (83.72 ± 20.09 cm) and taller (16.28 ± 1.28 m) trees. Natural regeneration was also strongest in cemeteries (91.69% ± 3.715%), followed by parishes (62.22% ± 8.56%) and mosques (38.82% ± 14.5%). The cult places play an important ecological role in biodiversity conservation in urban and peri-urban areas.
基金supported by the National Natural Science Foundation of China(31970116,72274192)。
文摘Biodiversity has become a terminology familiar to virtually every citizen in modern societies.It is said that ecology studies the economy of nature,and economy studies the ecology of humans;then measuring biodiversity should be similar with measuring national wealth.Indeed,there have been many parallels between ecology and economics,actually beyond analogies.For example,arguably the second most widely used biodiversity metric,Simpson(1949)’s diversity index,is a function of familiar Gini-index in economics.One of the biggest challenges has been the high“diversity”of diversity indexes due to their excessive“speciation”-there are so many indexes,similar to each country’s sovereign currency-leaving confused diversity practitioners in dilemma.In 1973,Hill introduced the concept of“numbers equivalent”,which is based on Renyi entropy and originated in economics,but possibly due to his abstruse interpretation of the concept,his message was not widely received by ecologists until nearly four decades later.What Hill suggested was similar to link the US dollar to gold at the rate of$35 per ounce under the Bretton Woods system.The Hill numbers now are considered most appropriate biodiversity metrics system,unifying Shannon,Simpson and other diversity indexes.Here,we approach to another paradigmatic shift-measuring biodiversity on ecological networks-demonstrated with animal gastrointestinal microbiomes representing four major invertebrate classes and all six vertebrate classes.The network diversity can reveal the diversity of species interactions,which is a necessary step for understanding the spatial and temporal structures and dynamics of biodiversity across environmental gradients.
基金financial support by the Development Plan of Science and Technology of Jilin Province(No.YDZJ202201ZYTS305)the Natural Science Foundation of Jilin Province(No.YDZJ202401316ZYTS)the Innovation Laboratory Development Program of Education Department of Jilin Province and Industry and Information Technology Department of Jilin Province,China(The Joint Laboratory of MAX/MXene Materials).
文摘MAX series materials,as non-van der Waals layered multi-element compounds,contribute remarkable regulated properties and functional dimension,combining the features of metal and ceramic materials due to their inherently laminated crystal structure that Mn+1Xn slabs are intercalated with A element layers.Oriented to the functional requirements of information,intelligence,electrification,and aerospace in the new era,how to accelerate MAX series materials into new quality productive forces?The systematic enhancement of knowledge about MAX series materials is intrinsic to understanding its low-dimensional geometric structure characteristics,and physical and chemical properties,revealing the correlation of composition,structure,and function and further realizing rational design based on simulation and prediction.Diversity also brings complexity to MAX materials research.This review provides substantial tabular information on(Ⅰ)MAX’s research timeline from 1960 to the present,(Ⅱ)structure diversity and classification convention,(Ⅲ)synthesis route exploration,(Ⅳ)prediction based on theory and machine learning,(Ⅴ)properties,and(Ⅵ)functional applications.Herein,the researchers can quickly locate research content and recognize connections and differences of MAX series materials.In addition,the research challenges for the future development of MAX series materials are highlighted.
基金financial support provided by the Research and Application Demonstration of Native Ecological Grass Seed Breeding Technology in“Black Soil Beaches”(2024-SF-101)。
文摘Plant diversity plays a crucial role in maintaining the stability of ecological function.Based on field investigations and experimental analyses,artificial grassland plots with varying sowing times,adjacent natural grassland(CK),and open-pit coal mine dumps in the Muli mining area of Qinghai Province were selected as research subjects for this study.The characteristics of plant diversity and community stability were measured and analyzed,and the relationships between these factors and their influencing variables were evaluated.The results indicated significant differences in the vegetation community characteristics and plant diversity among the various grasslands.Coverage,aboveground biomass,belowground biomass,soil total nitrogen,and soil total carbon were the highest when the growth period was three years.Plant diversity and community stability in the natural grassland were significantly greater than that in the artificial grassland and open-pit coal mine dumps.A significant positive correlation was observed between plant diversity and community stability,suggesting that plant diversity can serve as an index of community stability.The order of stability,from highest to lowest,was CK>11a>10a>8a>9a>6a>7a>3a>2a>1a>0a.Years were identified as the primary factors affecting plant diversity and community stability by altering the soil pH.These results elucidate the relationships and driving mechanisms between plant diversity and community stability in grasslands,providing a scientific basis for maintaining community stability in artificial grassland ecosystems in alpine mining areas.
文摘Two protected sites located on the outskirts of the Sena Oura National Park (PNSO) in West Mayo-Kebbi cover an area of 1800 m2 is pattern choose in pastoral enclave in both village. This study was undertaken to highlight the floristic diversity of the herbaceous and woody vegetation on these sites in the offing to know the ability of charge into UBT that most support the park peripheral. It took place on two experimental sites on a natural course in two villages: Wazetelan and Massang. The approach used for the study was a survey using the systematic sampling method and a 30 m × 30 m plot. The survey consisted in listing all the taxa in a floristically homogeneous plot, each assigned the Braun-Blanquet dominance abundance coefficient. These surveys revealed a floristic richness of 73 species, 58 genera, including 46 herbaceous and 26 woody species. The Shannon result gives H1' = 0.12 bit for herbaceous species and H2' = 0.44 bit for woody species, meaning that the herbaceous and woody populations of all the surveys have a very low species diversity, as H' < 3 according to the Shannon index assessment threshold. Herbaceous species are divided into 13 families and 33 genera. The most represented families are Fabaceae (27.3%) and Poaceae (21.9%). Most of the other families (1.3%) have only one species, if any. Herbaceous species are divided into 33 genera grouped into 13 families. The most represented families are Fabaces (16 species), 34%, and Poaceae (12 species), 26%. The 26 woody species, most of which come from itinerant surveys, are distributed across 24 genera and 12 families, the most important of which is Fabaceae with 09 species (34.6%). This floristic assessment, in terms of quantity and quality, has enabled us to estimate the carrying capacity of the two pastoral enclaves in Dari and Goumadji cantons, and to guide the government’s actions with regard to rangeland management.
基金Supported by National Natural Science Foundation of China(31900271,32160086)Key Technology Research for Identification of Toxic Fungi in Guizhou Province(GKHZC[2020]1Y065)+1 种基金Guizhou Grassroots Science Popularization Action Plan Project([2025]04)Study on Carbon Storage and Carbon Sink Value of Forest Vegetation in State-owned Shatang Forest Farms in Guangxi(2021KY02).
文摘[Objectives] To investigate the species diversity of wood-decaying fungi in karst regions of southwest China. [Methods] The karst core regions of southwest China, specifically Guizhou, Guangxi, and Yunnan, were investigated for the first time to analyze the species diversity characteristics of wood-decaying fungi in this area. This analysis was conducted through a comprehensive 5-year field investigation and systematic identification process. [Results] The wood-decaying fungi exhibited a distinctive species composition and distribution pattern within karst habitats, encompassing significant groups such as Polyporaceae and Hymenochaetaceae. Furthermore, these fungi demonstrated varying functional characteristics across the two ecological types of standing tree decay and wood decay. It was observed that wood-decaying fungi had a significant impact on the material cycle within karst ecosystems by degrading lignin and cellulose. Furthermore, the distribution of species diversity was closely associated with the characteristics of karst geomorphology and the types of vegetation. [Conclusions] This study not only addresses the lack of background data regarding wood-decaying fungi resources in karst regions, but also elucidates the maintenance mechanisms of fragile ecosystems from the perspective of decomposers. It provides a scientific foundation for biodiversity conservation, the prevention and control of forest diseases, and sustainable ecological management in karst regions.
文摘An inventory of Rhynchophorus species was carried out to determine their diversity, biogeographical variability and morphometrics. A shotgun trapping method was used at nine sites in three districts over a four-month period, identifying three species: R. quadrangulus, R. phoenicis, R. ferrugineus and a probable variant of R. phoenicis. Of these species, R. phoenicis stands out as the most widespread palm weevil, while the probable variant of R. phoenicis is considered the rarest subspecies in the Maniema region. The color of the head and elytra is a criterion for distinguishing the different species of Rhynchophorus spp. Morphological criteria indicate that the probable subspecies of R. phoenicis is the largest palm weevil in the Maniema region and even globally. It is followed by R. quadrangulus and, by far, by R. phoenicis. The smallest palm weevil in Maniema is R. ferrugineus. Moreover, these criteria reveal that, for all three species identified, the female is generally larger than the male. This study has the merit of extending the distribution of R. ferrugineus from the Maghreb to the central East of the DRC, and highlighting a subspecies of R. phoenicis. Recognition of the sexes on the basis of the shape of the tip of the abdomen (oval in the male and flat in the female) is an additional contribution.
基金financially supported by the NSF of China(3227161431870408)+3 种基金Biological Resources Programme,Chinese Academy of SciencesState Key Laboratory of Vegetation and Environmental Change of China(Y7206F1016)the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB31030000)National key basic R&D program of China(2017YFA0605100).
文摘Herbaceous plants are an essential component of forest diversity and driver of ecosystem processes.However,because the growth forms and life-history strategies of herbaceous plants differ from those of woody plants,it is unclear whether the mechanisms that drive patterns plant diversity and community structure in these two plant groups are the same.In this study,we determined whether herb and woody plant communities have similar patterns and drivers of alpha-and beta-diversity.We compared species richness,distribution,and abundance of herbs to woody seedlings in a 20-ha Donglingshan warmtemperate forest(Donglingshan FDP),China.We also determined whether variation in patterns of species richness and composition are better explained by environmental or spatial variables.Herbaceous plants accounted for 72%of all species(81 herbaceous,31 woody)recorded.Alpha-and beta-diversity were higher in herbs than in woody seedlings.Although alpha-diversity of herbs and woody seedlings was not correlated across the site,the local-site contributions to beta-diversity for herbs and woody seedlings were negatively correlated.Habitat type explained slightly more variation in herb community composition than in woody seedling composition,with the highest diversity in the low-elevation slope.Environmental variables explained the variation in species richness and composition more in herbaceous plants than in woody seedlings.Our results indicate that different mechanisms drive variation in the herb and woody seedling communities,with herbs exhibiting greater environmental sensitivity and habitat dependence.These findings contribute to the better understanding of herbaceous plant diversity and composition in forest communities.
基金funded by Gorgan University of Agricultural Sciences and Natural Resources(grant number 9318124503).
文摘Plant species diversity is one of the most widely used indicators in ecosystem management.The relation of species diversity with the size of the sample plot has not been fully determined for Oriental beech forests(Fagus orientalis Lipsky),a widespread species in the Hyrcanian region.Assessing the impacts of plot size on species diversity is fundamental for an ecosystem-based approach to forest management.This study determined the relation of species diversity and plot size by investigating species richness and abundance of both canopy and forest floor.Two hundred and fifty-six sample plots of 625 m^(2) each were layout in a grid pattern across 16 ha.Base plots(25 m×25 m)were integrated in different scales to investigate the effect of plot size on species diversity.The total included nine plots of 0.063,0.125,0.188,0.250,0.375,0.500,0.563,0.750 and 1 ha.Ten biodiversity indices were calculated.The results show that species richness in the different plot sizes was less than the actual value.The estimated value of the Simpson species diversity index was not significantly different from actual values for both canopy and forest floor diversity.The coefficient of variation of this index for the 1-ha sample plot showed the lowest amount across different plot sizes.Inverse Hill species diversity was insignificant difference across different plot sizes with an area greater than 0.500 ha.The modified Hill evenness index for the 1-ha sample size was a correct estimation of the 16-ha for both canopy and forest floor;however,the precision estimation was higher for the canopy layer.All plots greater than 0.250-ha provided an accurate estimation of the Camargo evenness index for forest floor species,but was inaccurate across different plot sizes for the canopy layer.The results indicate that the same plot size did not have the same effect across species diversity measurements.Our results show that correct estimation of species diversity measurements is related to the selection of appropriate indicators and plot size to increase the accuracy of the estimate so that the cost and time of biodiversity management may be reduced.
基金supported by the Southwest Minzu University Research Startup Funds (No.16011221038,RQD2022021)Double World-Class Project (No.CX2023010)。
文摘Wetland degradation is an escalating global challenge with profound impacts on animal diversity,particularly during successional processes.Birds,as highly mobile and environmentally sensitive organisms,serve as effective indicators of ecological change.While previous studies have primarily focused on local community structures and species diversity during a specific season,there is a need to extend the research timeframe and explore broader spatial variations.Additionally,expanding from simple species diversity indices to more multidimensional diversity indices would provide a more comprehensive understanding of wetland health and resilience.To address these gaps,we investigated the effects of wetland degradation on bird diversity across taxonomic,phylogenetic,and functional dimensions in the Zoige Wetland,a plateau meadow wetland biodiversity hotspot.Surveys were conducted during both breeding(summer)and overwintering(winter)seasons across 20 transects in 5 sampling areas,representing 4 degradation levels(pristine,low,medium,and high).Our study recorded a total of 106 bird species from 32 families and 14 orders,revealing distinct seasonal patterns in bird community composition and diversity.Biodiversity indices were significantly higher in pristine and low-degraded wetlands,particularly benefiting waterfowl(Anseriformes,Ciconiiformes)and wading birds(Charadriiformes)in winter,when these areas provided superior food resources and habitat conditions.In contrast,medium and highly degraded wetlands supported increased numbers of terrestrial birds(Passeriformes)and raptors(Accipitriformes,Falconiformes).Seasonal differences in taxonomic,phylogenetic,and functional diversity indices highlighted the contrasting ecological roles of wetlands during breeding and overwintering periods.Furthermore,indicator species analysis revealed key species associated with specific degradation levels and seasons,providing valuable insights into wetland health.This study underscores the importance of spatiotemporal dynamics in understanding avian responses to wetland degradation.By linking seasonal patterns of bird diversity to habitat conditions,our findings contribute to conservation efforts and provide a framework for assessing wetland degradation and its ecological impacts.
基金funded by the Strategic Priority Research Program of Chinese Academy of Sciences (XDB31000000)the Joint Fund of the National Natural Science Foundation of China-Yunnan Province (U1902203)+1 种基金Major Program for Basic Research Project of Yunnan Province (202101BC070002)Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences (151C53KYSB20200019)
文摘Patterns and drivers of species–genetic diversity correlations(SGDCs)have been broadly examined across taxa and ecosystems and greatly deepen our understanding of how biodiversity is maintained.However,few studies have examined the role of canopy structural heterogeneity,which is a defining feature of forests,in shaping SGDCs.Here,we determine what factors contribute toα-andβ-species–genetic diversity correlations(i.e.,α-andβ-SGDCs)in a Chinese subtropical forest.For this purpose,we used neutral molecular markers to assess genetic variation in almost all adult individuals of the dominant tree species,Lithocarpus xylocarpus,across plots in the Ailaoshan National Natural Reserve.We also quantified microhabitat variation by quantifying canopy structure heterogeneity with airborne laser scanning on 201-ha subtropical forest plots.We found that speciesα-diversity was negatively correlated with geneticα-diversity.Canopy structural heterogeneity was positively correlated with speciesα-diversity but negatively correlated with geneticα-diversity.These contrasting effects contributed to the formation of a negativeα-SGDC.Further,we found that canopy structural heterogeneity increases speciesα-diversity and decreases geneticα-diversity by reducing the population size of target species.Speciesβ-diversity,in contrast,was positively correlated with geneticβ-diversity.Differences in canopy structural heterogeneity between plots had non-linear parallel effects on the two levels ofβ-diversity,while geographic distance had a relatively weak effect onβ-SGDC.Our study indicates that canopy structural heterogeneity simultaneously affects plot-level community species diversity and population genetic diversity,and species and genetic turnover across plots,thus drivingα-andβ-SGDCs.
基金Supported by the Natural Science Foundation of Fujian Province(No.2022J05278)the Marine and Fishery Development Special Fund of Xiamen(No.23YYST064QCB36)。
文摘Coastal ecosystems are plagued by high levels of microplastic pollution.Conducting baseline surveys is crucial to comprehend the distribution and influencing factors of this pollution.The present study investigates the spatiotemporal variation and diversity of microplastic on the coastal beaches in Xiamen City,China,considering the combined effects of seasons,human activities,and physicochemical properties of sediments.It is detected that the abundance of microplastics in Xiamen beaches was 0.271±0.01 items/g.The abundance of microplastics in dry season was significantly higher than in rainy season.In terms of spatial variation,the beaches that attracted a larger number of tourists exhibited significantly higher microplastic abundance.The temporal pattern of microplastic distribution on different beaches varied greatly due to region-specific human activities(e.g.,mangrove restoration project)and sedimentary properties(e.g.,bulk density).When the assemblage of microplastics in the coastal area was viewed as a biological community,the Shannon-Wiener index and Pielou's index were higher in rainy season and in the beaches with high intensity of tourist activities,which suggests that the human activities and the surface runoff may contribute to the diversity of microplastics on coastal beaches.Future investigations are encouraged to combine controlled experiments and long-term monitoring at multiple scales to elucidate the underlying mechanisms and factors associated with microplastic pollution in coastal zone.
基金The Zhejiang Provincial Natural Science Foundation of China under contract Nos LY22D060001 and LY20C190008the National Natural Science Foundation of China(NSFC)under contract No.41806156the Key Research and Development Projects in Xizang under contract No.XZ202301ZY0012N.
文摘Microsatellite markers with polymorphic advantages are widely used in the exploration and utilization of marine fishery resources.In this study,16 polymorphic microsatellite markers were used to evaluate the diversity and population structure of Setipinna tenuifilis,a nearshore fish of economic and ecological value in the western Pacific Ocean and Indian Ocean.The genetic diversity of S.tenuifilis showed a high level[mean Na(number of alleles)is 23.25,mean Ho(observed heterozygosity)is 0.639,mean R_(a)(allelic richness)is 11.625,and the polymorphic information content(PIC)is 0.844]similar to other Clupeiformes fish species.The nine wild S.tenuifilis populations showed significant differentiation(F_(ST)ranging from 0.00384 to 0.19346)and were generally divided into southern and northern populations based on genetic structure,except for the Zhoushan population,which exhibited genetic mixture.Our results provide fundamental but significant genetic insights for the management and conservation of S.tenuifilis fishery resources.
基金supported by the National Natural Science Foundation of China(32370703)the CAMS Innovation Fund for Medical Sciences(CIFMS)(2022-I2M-1-021,2021-I2M-1-061)the Major Project of Guangzhou National Labora-tory(GZNL2024A01015).
文摘Viral infectious diseases,characterized by their intricate nature and wide-ranging diversity,pose substantial challenges in the domain of data management.The vast volume of data generated by these diseases,spanning from the molecular mechanisms within cells to large-scale epidemiological patterns,has surpassed the capabilities of traditional analytical methods.In the era of artificial intelligence(AI)and big data,there is an urgent necessity for the optimization of these analytical methods to more effectively handle and utilize the information.Despite the rapid accumulation of data associated with viral infections,the lack of a comprehensive framework for integrating,selecting,and analyzing these datasets has left numerous researchers uncertain about which data to select,how to access it,and how to utilize it most effectively in their research.This review endeavors to fill these gaps by exploring the multifaceted nature of viral infectious diseases and summarizing relevant data across multiple levels,from the molecular details of pathogens to broad epidemiological trends.The scope extends from the micro-scale to the macro-scale,encompassing pathogens,hosts,and vectors.In addition to data summarization,this review thoroughly investigates various dataset sources.It also traces the historical evolution of data collection in the field of viral infectious diseases,highlighting the progress achieved over time.Simultaneously,it evaluates the current limitations that impede data utilization.Furthermore,we propose strategies to surmount these challenges,focusing on the development and application of advanced computational techniques,AI-driven models,and enhanced data integration practices.By providing a comprehensive synthesis of existing knowledge,this review is designed to guide future research and contribute to more informed approaches in the surveillance,prevention,and control of viral infectious diseases,particularly within the context of the expanding big-data landscape.
基金National Key Research and Development Program of China(2022YFF1000103)Postdoctoral Fellowship Program of CPSF under Grant Number GZC20240620.
文摘Background Mobile element variants(MEVs)have a significant and complex impact on genomic diversity and phe-notypic traits.However,the quantity,distribution,and relationship with gene expression and complex traits of MEVs in the pig genome remain poorly understood.Results We constructed the most comprehensive porcine MEV library based on high-depth whole genome sequencing(WGS)data from 747 pigs across 59 breeds worldwide.This database identified a total of 147,993 poly-morphic MEVs,including 121,099 short interspersed nuclear elements(SINEs),26,053 long interspersed nuclear elements(LINEs),802 long terminal repeats(LTRs),and 39 other transposons,among which 54%are newly discovered.We found that MEVs are unevenly distributed across the genome and are strongly influenced by negative selec-tion effects.Importantly,we identified 514,530,and 584 candidate MEVs associated with population differentiation,domestication,and breed formation,respectively.For example,a significantly differentiated MEV is located in the ATRX intron between Asian and European pigs,whereas ATRX is also differentially expressed between Asian and European pigs in muscle tissue.In addition,we identified 4,169 expressed MEVs(eMEVs)significantly associated with gene expression and 6,914 splicing MEVs(sMEVs)associated with gene splicing based on RNA-seq data from 266 porcine liver tissues.These eMEVs and sMEVs explain 6.24%and 9.47%,respectively,of the observed cis-heritability and high-light the important role of MEVs in the regulation of gene expression.Finally,we provide a high-quality SNP–MEV reference haplotype panel to impute MEV genotypes from genome-wide SNPs.Notably,we identified a candidate MEV significantly associated with total teat number,demonstrating the functionality of this reference panel.Conclusions The present investigation demonstrated the importance of MEVs in pigs in terms of population diversity,gene expression and phenotypic traits,which may provide useful resources and theoretical support for pig genetics and breeding.
基金Supported by the Regional Innovation Development Joint Fund Project of the National Natural Science Foundation of China(No.U20A2087)the Shiptime Sharing Project of National Natural Science Foundation of China(No.42249911)。
文摘Marine fish diversity in the Beibu Gulf from 2014 to 2022 was analyzed,using various methods including at-sea fisheries resource surveys,fishing port surveys,underwater survey techniques,and data from literature,books,and databases,from which 1059 fish species across 40 orders,166 families,and 503 genera were identified.Among them,Acanthuriformes displayed the highest diversity,followed by Carangiformes and Perciformes.Notably,eight alien species were found in the Beibu Gulf.The International Union for Conservation of Nature(IUCN)Red List assessment revealed 51threatened species,primarily cartilaginous fish.Taxonomic changes affected 88.70%of species due to classification adjustments,misidentifications,and junior synonymy.This study contributed new data of the gulf,including one additional order,six new families,34 new genera,and 81 new species,emphasizing the dynamic nature of marine ecosystems.Fish diversity in the gulf was relatively lower than the broader South China Sea,attributed to limited habitats and survey methods.Different survey methods,such as gill nets,trap nets,and underwater cameras,yielded varying results.Ocean currents may have transported deep-sea species into the Beibu Gulf,leading to accidental records.Research gaps exist in unexplored areas,warranting further investigation.Therefore,the Beibu Gulf hosts significant marine biodiversity,but taxonomic challenges and undiscovered species require new research and conservation efforts.
