Wastewater treatment plants(WWTPs)with additional tertiary ultrafiltration membranes and ozonation treatment can improve water quality in receiving rivers.However,the impacts of WWTP upgrade(WWTP-UP)on pathogens carry...Wastewater treatment plants(WWTPs)with additional tertiary ultrafiltration membranes and ozonation treatment can improve water quality in receiving rivers.However,the impacts of WWTP upgrade(WWTP-UP)on pathogens carrying antibiotic resistance genes(ARGs)and virulence factors(VFs)in rivers remain poorly understood.In this study,ARGs,VFs,and their pathogenic hosts were investigated in three rivers impacted by large-scale WWTP-UP.A five-year sampling campaign covered the periods before and after WWTP-UP.Results showed that the abundance of total metagenome-assembled genomes(MAGs)containing both ARGs and VFs in receiving rivers did not decrease substantially after WWTP-UP,but the abundance of MAGs belonging to pathogenic genera that contain both ARGs and VFs(abbreviated as PAVs)declined markedly.'Genome-resolved metagenomics further revealed that WWTP-UP not only reduced most types of VFs and ARGs in PAVs,but also effectively eliminated efflux pump and nutritional VFs carried by PAVs in receiving rivers.WWTP-UP narrowed the pathogenic host ranges of ARGs and VFs and mitigated the cooccurrence of ARGs and VFs in receiving rivers.These findings underline the importance of WWTPUP for the alleviation of pathogens containing both ARGs and VFs in receiving rivers。展开更多
Despite coastal mudflats serving as essential ecological zones interconnecting terrestrial/freshwater and marine systems,little is known about the profiles of antibiotic resistance genes(ARGs)in this area.In this stud...Despite coastal mudflats serving as essential ecological zones interconnecting terrestrial/freshwater and marine systems,little is known about the profiles of antibiotic resistance genes(ARGs)in this area.In this study,characteristics of typical ARGs,involving both intracellular(iARGs)and extracellular ARGs(eARGs)at different physical states,were explored in over 1000 km of coastal mudflats in Eastern China.Results indicated the presence of iARGs and eARGs at states of both freely present or attached by particles.The abundance of eARGs was significantly higher than that of iARGs(87.3%vs 12.7%),and their dominance was more significant than those in other habitats(52.7%-76.3%).ARG abundance,especially for eARGs,showed an increasing trend(p<0.05)from southern(Nantong)to northern(Lianyungang)coastalmudflats.Higher salinity facilitated the transformation from iARGs to eARGs,and smaller soil particle size was conducive to the persistence of eARGs in northern coastal mudflats.This study addresses the neglected function of coastal mudflats as eARGs reservoirs.展开更多
Solid-phase denitrification(SPD)has been used in wastewater treatment plant effluent to enhance nitrate removal,and antibiotics co-existing in the effluent is a common environmental problem.In this study,it was system...Solid-phase denitrification(SPD)has been used in wastewater treatment plant effluent to enhance nitrate removal,and antibiotics co-existing in the effluent is a common environmental problem.In this study,it was systematically investigated the effect of single trace sulfamethoxazole(SMX)/trimethoprim(TMP)and theirmixture on microbial denitrification performance,the antibiotics removal,and antibiotics resistance genes(ARGs)in corncob supported SPD system.The average denitrification rate was improved by 46.90%or 61.09%with single 50μg/L SMX or TMP,while there was no significant inhibition with mixed SMX and TMP.The abundance of dominant denitrifiers(Comamonadaceae family and Azospia)and fermentation bacteria(Ancalomicrobium)were consistent with the denitrification performance of different antibiotics groups.Single SMX and TMP achieved relatively higher denitrification gene and enzyme abundance.Mixed SMX and TMP improved the denitrification gene copies,but they reduced the key denitrification enzymes except for EC 1.7.7.2.Additionally,the removal efficiency of TMP(56.70%±3.18%)was higher than that of SMX(25.44%±2.62%)in single antibiotic group,and the existence of other antibiotics(i.e.SMX or TMP)had no significant impact on the TMP or SMX removal performance.Biodegradation was the main removal mechanism of SMX and TMP,while sludge and corncob adsorption contributed a little to their removal.SMX had the risk of sulfanilamide resistance genes(SRGs)dissemination.Furthermore,network analysis indicated that Niveibacterium and Bradyrhizobium were the potential hosts of SRGs,which promoted the horizontal transmission of ARGs.展开更多
The effect of combined antibiotics exposure on nitrogen removal,microbial community assembly and proliferation of antibiotics resistance genes(ARGs)is a hotspot in activated sludge system.However,it is unclear that ho...The effect of combined antibiotics exposure on nitrogen removal,microbial community assembly and proliferation of antibiotics resistance genes(ARGs)is a hotspot in activated sludge system.However,it is unclear that how the historical antibiotic stress affects the subsequent responses of microbes and ARGs to combined antibiotics.In this study,the effects of combined sulfamethoxazole(SMX)and trimethoprim(TMP)pollution on activated sludge under legacy of SMX or TMP stress with different doses(0.005-30 mg/L)were investigated to clarify antibiotic legacy effects.Nitrification activity was inhibited under higher level of combined exposure but a high total nitrogen removal(∼70%)occurred.Based on the full-scale classification,the legacy effect of past antibiotic stress had a marked effect on community composition of conditionally abundant taxa(CAT)and conditionally rare or abundant taxa(CRAT).Rare taxa(RT)were the keystone taxa in the microbial network,and the responses of hub genera were also affected by the legacy of antibiotic stress.Nitrifying bacteria and genes were inhibited by the antibiotics and aerobic denitrifying bacteria(Pseudomonas,Thaurea and Hydrogenophaga)were enriched under legacy of high dose,as were the key denitrifying genes(napA,nirK and norB).Furthermore,the occurrences and co-selection relationship of 94 ARGs were affected by legacy effect.While,some shared hosts(eg.,Citrobacter)and hub ARGs(eg.,mdtD,mdtE and acrD)were identified.Overall,antibiotic legacy could affect responses of activated sludge to combined antibiotic and the legacy effect was stronger at higher exposure levels.展开更多
Food waste(FW)has been recognized as essential reservoir for resource recovery via anaerobic fermentation,which could also bring the potential risk of antibiotic resistance genes(ARGs)dissemination.Although the struct...Food waste(FW)has been recognized as essential reservoir for resource recovery via anaerobic fermentation,which could also bring the potential risk of antibiotic resistance genes(ARGs)dissemination.Although the structural deficiency of FW could be stimulated by enzymatic pretreatment to enhance fermentation efficiency,the influences of enzymatic pretreatment on ARGs fate and microbial metabolic pathways involved in ARGs dissemination have rarely been reported.This work proved that enzymatic pretreatment could effectively decrease the total abundance of ARGs(reduced by 13.8%-24.5%)during long-term FW fermentation.It was found that enzymatic pretreatment significantly reduced the ARGs belonging to the efflux pump,which might be ascribed to its ability to increase membrane permeability.Furthermore,enzymatic pretreatment was in favor of reducing microbial diversity and various potential ARGs host(e.g.,Methanosarcina,Clostridium,Prevotella,Parabacteroides).Also,this pretreatment remarkably up-regulated the genetic expressions involved in ABC transporter(e.g.,eryF and mntA)and down-regulated the genetic expressions that participated in DNA replication,two-component systems(e.g.,uphA and cckA),and quorum sensing(e.g.,rpfF and lsrG),thereby decreasing ARGs transmission.This study would expand the insight of the influences of pretreatment method on ARGs fate during FW fermentation,and offer practical guidance on the sustainable management of FW.展开更多
As a major reservoir of antibiotics,animal manure contributes a lot to the augmented environmental pressure of antibiotic resistance genes(ARGs).This might be the first study to explore the effects of different ventil...As a major reservoir of antibiotics,animal manure contributes a lot to the augmented environmental pressure of antibiotic resistance genes(ARGs).This might be the first study to explore the effects of different ventilation types on the control of ARGs and to identify the relationships between archaeal communities and ARGs during the composting of dairy manure.Several ARGs were quantified via Real-time qPCR and microbial communities including bacteria and archaea were analyzed by High-throughput sequencing during vacuum-type composting(VTC) and positive-pressure composting(PPC).The total detected ARGs and class I integrase gene(intI1) under VTC were significantly lower than that under PPC during each stage of the composting(p <0.001).The relative abundance of potential human pathogenic bacteria(HPB) which were identified based on sequencing information and correlation analysis decreased by 74.6% and 91.4% at the end of PPC and VTC,respectively.The composition of archaeal communities indicated that methane-producing archaea including Methanobrevibacter,Methanocorpusculum and Methanosphaera were dominant throughout the composting.Redundancy analysis suggested that Methanobrevibacter and Methanocorpusculum were positively correlated with all of the detected ARGs.Network analysis determined that the possible hosts of ARGs were different under VTC and PPC,and provided new sights about potential links between archaea and ARGs.Our results showed better performance of VTC in reducing ARGs and potential HPB and demonstrated that some archaea could also be influential hosts of ARGs,and caution the risks of archaea carrying ARGs.展开更多
This study aimed to reveal how amoxicillin(AMX) affected the microbial community and the spread mechanism of antibiotic resistance genes(ARGs) in the AMX manufacture wastewater treatment system. For this purpose, a 1....This study aimed to reveal how amoxicillin(AMX) affected the microbial community and the spread mechanism of antibiotic resistance genes(ARGs) in the AMX manufacture wastewater treatment system. For this purpose, a 1.47 L expanded granular sludge bed(EGSB) reactor was designed and run for 241 days treating artificial AMX manufacture wastewater. 454 pyrosequencing was applied to analyze functional microorganisms in the system. The antibiotic genes OXA_(-1), OXA_(-2), OXA_(-10), TEM_(-1), CTX-M_(-1), class I integrons(intI1) and 16 SrRNA genes were also examined in sludge samples. The results showed that the genera Ignavibacterium, Phocoenobacter,Spirochaeta, Aminobacterium and Cloacibacillus contributed to the degradation of different organic compounds(such as various sugars and amines). And the relative quantification of eachβ-lactam resistance gene in the study was changed with the increasing of AMX concentration.Furthermore the vertical gene transfer was the main driver for the spread of ARGs rather than horizontal transfer pathways in the system.展开更多
Antibiotic resistance is a sword of Damocles that hangs over humans.In regards to airborne antibiotic resistance genes(AARGs),critical knowledge gaps still exist in the identification of hotspots and quantification of...Antibiotic resistance is a sword of Damocles that hangs over humans.In regards to airborne antibiotic resistance genes(AARGs),critical knowledge gaps still exist in the identification of hotspots and quantification of exposure levels in different environments.Here,we have studied the profiles of AARGs,mobile genetic elements(MGEs)and bacterial communities in various atmospheric environments by high throughput q PCR and 16S r RNA gene sequencing.We propose a new AARGs exposure dose calculation that uses short-term inhalation(STI).Swine farms and hospitals were high-risk areas where AARGs standardised abundance was more abundant than suburbs and urban areas.Additionally,resistance gene abundance in swine farm worker sputum was higher than that in healthy individuals in other environments.The correlation between AARGs with MGEs and bacteria was strong in suburbs but weak in livestock farms and hospitals.STI exposure analysis revealed that occupational intake of AARGs(via PM10)in swine farms and hospitals were 110 and 29 times higher than in suburbs,were 1.5×10^(4),5.6×10^(4)and 5.1×10^(2)copies,i.e.,61.9%,75.1%and 10.7%of the overall daily inhalation intake,respectively.Our study comprehensively compares environmental differences in AARGs to identify high-risk areas,and forwardly proposes the STI exposure dose of AARGs to guide risk assessment.展开更多
The global increased antibiotic resistance level in pathogenic microbes has posed a significant threat to human health.Fresh vegetables have been recognized to be an important vehicle of antibiotic resistance genes(AR...The global increased antibiotic resistance level in pathogenic microbes has posed a significant threat to human health.Fresh vegetables have been recognized to be an important vehicle of antibiotic resistance genes(ARGs)from environments to human beings.Phyllosphere ARGs have been indicated to be changed with plant species,yet the influence of plant cultivar on the phyllospheric resistome is still unclear.Here,we detected the ARGs and bacterial communities in the phyllosphere of two cultivars of cilantros and their corresponding soils using high-throughput quantitative PCR technique and bacterial 16S rRNA gene-based high-throughput sequencing,respectively.We further identified the potential bacterial pathogens and analyzed the effects of plant cultivar on ARGs,mobile genetic elements(MGEs),microbiome and potential bacterial pathogens.The results showed that the cultivars did not affect the ARG abundance and composition,but significantly shaped the abundance of MGEs and the composition structure of bacteria in the phyllosphere.The relative abundance of potential bacterial pathogenswas significantly higher in the phyllosphere than that in soils.Mantel test showed that the ARG patterns were significantly correlated to the patterns of potential bacterial pathogens.Our results suggested that the horizontal gene transfer of ARGs in the phyllosphere might be different between the two cultivars of cilantro and highlighted the higher risk of phyllospheric microorganisms compared with those in soils.These findings extend our knowledge on the vegetable microbiomes,ARGs,and potential pathogens,suggesting more agricultural and hygiene protocols are needed to control the risk of foodborne ARGs.展开更多
There is now general concern about widespread antibiotic resistance,and growing evidence indicates that gut microbiota is critical in providing antibiotic resistance.Honeybee is an important pollinator;the incidence o...There is now general concern about widespread antibiotic resistance,and growing evidence indicates that gut microbiota is critical in providing antibiotic resistance.Honeybee is an important pollinator;the incidence of antibiotic resistance genes in honeybee gut causes potential risks to not only its own health but also to public and animal health,for its potential disseminator role,thus receiving more attention from the public.Recent analysis results reveal that the gut of honeybee serves as a reservoir of antibiotic resistance genes,probably due to antibiotics application history in beekeeping and horizontal gene transfer from the highly polluted environment.These antibiotic resistance genes accumulate in the honeybee gut and could be transferred to the pathogen,even having the potential to spread during pollination,tending,social interactions,etc.Newly acquired resistance traits may cause fitness reduction in bacteria whereas facilitating adaptive evolution as well.This review outlines the current knowledge about the resistome in honeybee gut and emphasizes its role in antibiotic resistance dissemination.展开更多
To meet the rapidly growing global demand for aquaculture products,large amounts of antibiotics were used in aquaculture,which might accelerate the evolution of antibiotic-resistant bacteria(ARB)and the propagation of...To meet the rapidly growing global demand for aquaculture products,large amounts of antibiotics were used in aquaculture,which might accelerate the evolution of antibiotic-resistant bacteria(ARB)and the propagation of antibiotic genes(ARGs).In our research,we revealed the ARGs profiles,their co-occurrence with mobile genetic elements(MGEs),and potential hosts in sediments of a crab pond wastewater purification system based on metagenomic analysis.The residual antibiotic seems to increase the propagation of ARGs in the crab pond,but there was no clear relationship between a given antibiotic type and the corresponding resistance genes.The effect of aquaculture on sediment was not as profound as that of other anthropogentic activities,but increased the relative abundance of sulfon-amide resistance gene.A higher abundance of MGEs,especially plasmid,increased the po-tential ARGs dissemination risk in crab and purification ponds.Multidrug and sulfonamide resistance genes had greater potential to transfer because they were more frequently carried by MGEs.The horizontal gene transfer was likely to occur among a variety of microorgan-isms,and various ARGs hosts including Pseudomonas,Acinetobacter,Escherichia,and Klebsiella were identified.Bacterial community influenced the composition of ARG hosts,and Pro-teobacteria was the predominant hosts.Overall,our study provides novel insights into the environmental risk of ARGs in sediments of aquaculture wastewater treatment system.展开更多
Antimicrobial resistance(AMR)has emerged as a significant challenge in human health.Wastewater treatment plants(WWTPs),acting as a link between human activities and the environment,create ideal conditions for the sele...Antimicrobial resistance(AMR)has emerged as a significant challenge in human health.Wastewater treatment plants(WWTPs),acting as a link between human activities and the environment,create ideal conditions for the selection and spread of antibiotic resistance genes(ARGs)and antibioticresistant bacteria(ARB).Unfortunately,current treatment processes are ineffective in removing ARGs,resulting in the release of large quantities of ARB and ARGs into the aquatic environment through WWTP effluents.This,in turn,leads to their dispersion and potential transmission to human through water and the food chain.To safeguard human and environmental health,it is crucial to comprehend the mechanisms by which WWTP effluent discharge influences the distribution and diffusion of ARGs in downstream waterbodies.In this study,we examine the latest researches on the antibiotic resistome in various waterbodies that have been exposed to WWTP effluent,highlighting the key influencing mechanisms.Furthermore,recommendations for future research and management strategies to control the dissemination of ARGs from WWTPs to the environment are provided,with the aim to achieve the“One Health”objective.展开更多
基金the National Natural Science Foundation of China(42101128,51578537,and 51778603)Chinese Academy of Sciences(QYZDY-SSW-DQC004).
文摘Wastewater treatment plants(WWTPs)with additional tertiary ultrafiltration membranes and ozonation treatment can improve water quality in receiving rivers.However,the impacts of WWTP upgrade(WWTP-UP)on pathogens carrying antibiotic resistance genes(ARGs)and virulence factors(VFs)in rivers remain poorly understood.In this study,ARGs,VFs,and their pathogenic hosts were investigated in three rivers impacted by large-scale WWTP-UP.A five-year sampling campaign covered the periods before and after WWTP-UP.Results showed that the abundance of total metagenome-assembled genomes(MAGs)containing both ARGs and VFs in receiving rivers did not decrease substantially after WWTP-UP,but the abundance of MAGs belonging to pathogenic genera that contain both ARGs and VFs(abbreviated as PAVs)declined markedly.'Genome-resolved metagenomics further revealed that WWTP-UP not only reduced most types of VFs and ARGs in PAVs,but also effectively eliminated efflux pump and nutritional VFs carried by PAVs in receiving rivers.WWTP-UP narrowed the pathogenic host ranges of ARGs and VFs and mitigated the cooccurrence of ARGs and VFs in receiving rivers.These findings underline the importance of WWTPUP for the alleviation of pathogens containing both ARGs and VFs in receiving rivers。
基金This study was supported by the National Natural Science Foundation of China(No.42177348)the Natural Science Foundation of Jiangsu Province(No.BK20201367)China Postdoctoral Science Foundation(No.2021M701663).
文摘Despite coastal mudflats serving as essential ecological zones interconnecting terrestrial/freshwater and marine systems,little is known about the profiles of antibiotic resistance genes(ARGs)in this area.In this study,characteristics of typical ARGs,involving both intracellular(iARGs)and extracellular ARGs(eARGs)at different physical states,were explored in over 1000 km of coastal mudflats in Eastern China.Results indicated the presence of iARGs and eARGs at states of both freely present or attached by particles.The abundance of eARGs was significantly higher than that of iARGs(87.3%vs 12.7%),and their dominance was more significant than those in other habitats(52.7%-76.3%).ARG abundance,especially for eARGs,showed an increasing trend(p<0.05)from southern(Nantong)to northern(Lianyungang)coastalmudflats.Higher salinity facilitated the transformation from iARGs to eARGs,and smaller soil particle size was conducive to the persistence of eARGs in northern coastal mudflats.This study addresses the neglected function of coastal mudflats as eARGs reservoirs.
基金supported by the Special Funds for the Balance of the Central Financial and Technology Plan(No.2021-JY-33)National Basic Research Program of China(No.2019YFC0408602).
文摘Solid-phase denitrification(SPD)has been used in wastewater treatment plant effluent to enhance nitrate removal,and antibiotics co-existing in the effluent is a common environmental problem.In this study,it was systematically investigated the effect of single trace sulfamethoxazole(SMX)/trimethoprim(TMP)and theirmixture on microbial denitrification performance,the antibiotics removal,and antibiotics resistance genes(ARGs)in corncob supported SPD system.The average denitrification rate was improved by 46.90%or 61.09%with single 50μg/L SMX or TMP,while there was no significant inhibition with mixed SMX and TMP.The abundance of dominant denitrifiers(Comamonadaceae family and Azospia)and fermentation bacteria(Ancalomicrobium)were consistent with the denitrification performance of different antibiotics groups.Single SMX and TMP achieved relatively higher denitrification gene and enzyme abundance.Mixed SMX and TMP improved the denitrification gene copies,but they reduced the key denitrification enzymes except for EC 1.7.7.2.Additionally,the removal efficiency of TMP(56.70%±3.18%)was higher than that of SMX(25.44%±2.62%)in single antibiotic group,and the existence of other antibiotics(i.e.SMX or TMP)had no significant impact on the TMP or SMX removal performance.Biodegradation was the main removal mechanism of SMX and TMP,while sludge and corncob adsorption contributed a little to their removal.SMX had the risk of sulfanilamide resistance genes(SRGs)dissemination.Furthermore,network analysis indicated that Niveibacterium and Bradyrhizobium were the potential hosts of SRGs,which promoted the horizontal transmission of ARGs.
基金supported by the National Natural Science Foundation of China(No.51808013)Connotation Development Quota Project of High-top Talent of BJUT(No.YS20-1006757-056).
文摘The effect of combined antibiotics exposure on nitrogen removal,microbial community assembly and proliferation of antibiotics resistance genes(ARGs)is a hotspot in activated sludge system.However,it is unclear that how the historical antibiotic stress affects the subsequent responses of microbes and ARGs to combined antibiotics.In this study,the effects of combined sulfamethoxazole(SMX)and trimethoprim(TMP)pollution on activated sludge under legacy of SMX or TMP stress with different doses(0.005-30 mg/L)were investigated to clarify antibiotic legacy effects.Nitrification activity was inhibited under higher level of combined exposure but a high total nitrogen removal(∼70%)occurred.Based on the full-scale classification,the legacy effect of past antibiotic stress had a marked effect on community composition of conditionally abundant taxa(CAT)and conditionally rare or abundant taxa(CRAT).Rare taxa(RT)were the keystone taxa in the microbial network,and the responses of hub genera were also affected by the legacy of antibiotic stress.Nitrifying bacteria and genes were inhibited by the antibiotics and aerobic denitrifying bacteria(Pseudomonas,Thaurea and Hydrogenophaga)were enriched under legacy of high dose,as were the key denitrifying genes(napA,nirK and norB).Furthermore,the occurrences and co-selection relationship of 94 ARGs were affected by legacy effect.While,some shared hosts(eg.,Citrobacter)and hub ARGs(eg.,mdtD,mdtE and acrD)were identified.Overall,antibiotic legacy could affect responses of activated sludge to combined antibiotic and the legacy effect was stronger at higher exposure levels.
基金This work was financially supported by the National Key Research and Development Program of China(No.2019YFC1906302)the Shanghai Natural Science Foundation(No.22ZR1466900)the China Postdoctoral Science Foundation(No.2021M692423).
文摘Food waste(FW)has been recognized as essential reservoir for resource recovery via anaerobic fermentation,which could also bring the potential risk of antibiotic resistance genes(ARGs)dissemination.Although the structural deficiency of FW could be stimulated by enzymatic pretreatment to enhance fermentation efficiency,the influences of enzymatic pretreatment on ARGs fate and microbial metabolic pathways involved in ARGs dissemination have rarely been reported.This work proved that enzymatic pretreatment could effectively decrease the total abundance of ARGs(reduced by 13.8%-24.5%)during long-term FW fermentation.It was found that enzymatic pretreatment significantly reduced the ARGs belonging to the efflux pump,which might be ascribed to its ability to increase membrane permeability.Furthermore,enzymatic pretreatment was in favor of reducing microbial diversity and various potential ARGs host(e.g.,Methanosarcina,Clostridium,Prevotella,Parabacteroides).Also,this pretreatment remarkably up-regulated the genetic expressions involved in ABC transporter(e.g.,eryF and mntA)and down-regulated the genetic expressions that participated in DNA replication,two-component systems(e.g.,uphA and cckA),and quorum sensing(e.g.,rpfF and lsrG),thereby decreasing ARGs transmission.This study would expand the insight of the influences of pretreatment method on ARGs fate during FW fermentation,and offer practical guidance on the sustainable management of FW.
基金supported by the National Natural Science Foundation of China (No.31670507)the InterdisciplinaryInnovation Team Program of the Chinese Academy of Sciences(2015,the Team for the Directional Biotransformation of Environmental Pollutants)+1 种基金the Major Science and Technology Program for Water Pollution Control and Treatment of China (Nos.2015ZX07206-006,2014ZX07204-005)the Key Research Program of Chinese Academy of Sciences (No. ZDRW-ZS-2016-5).
文摘As a major reservoir of antibiotics,animal manure contributes a lot to the augmented environmental pressure of antibiotic resistance genes(ARGs).This might be the first study to explore the effects of different ventilation types on the control of ARGs and to identify the relationships between archaeal communities and ARGs during the composting of dairy manure.Several ARGs were quantified via Real-time qPCR and microbial communities including bacteria and archaea were analyzed by High-throughput sequencing during vacuum-type composting(VTC) and positive-pressure composting(PPC).The total detected ARGs and class I integrase gene(intI1) under VTC were significantly lower than that under PPC during each stage of the composting(p <0.001).The relative abundance of potential human pathogenic bacteria(HPB) which were identified based on sequencing information and correlation analysis decreased by 74.6% and 91.4% at the end of PPC and VTC,respectively.The composition of archaeal communities indicated that methane-producing archaea including Methanobrevibacter,Methanocorpusculum and Methanosphaera were dominant throughout the composting.Redundancy analysis suggested that Methanobrevibacter and Methanocorpusculum were positively correlated with all of the detected ARGs.Network analysis determined that the possible hosts of ARGs were different under VTC and PPC,and provided new sights about potential links between archaea and ARGs.Our results showed better performance of VTC in reducing ARGs and potential HPB and demonstrated that some archaea could also be influential hosts of ARGs,and caution the risks of archaea carrying ARGs.
基金supported by the National Natural Science Foundation of China (No.51478138)the State Key Lab of Urban Water Resource and Environment (No.HIT ES200902)
文摘This study aimed to reveal how amoxicillin(AMX) affected the microbial community and the spread mechanism of antibiotic resistance genes(ARGs) in the AMX manufacture wastewater treatment system. For this purpose, a 1.47 L expanded granular sludge bed(EGSB) reactor was designed and run for 241 days treating artificial AMX manufacture wastewater. 454 pyrosequencing was applied to analyze functional microorganisms in the system. The antibiotic genes OXA_(-1), OXA_(-2), OXA_(-10), TEM_(-1), CTX-M_(-1), class I integrons(intI1) and 16 SrRNA genes were also examined in sludge samples. The results showed that the genera Ignavibacterium, Phocoenobacter,Spirochaeta, Aminobacterium and Cloacibacillus contributed to the degradation of different organic compounds(such as various sugars and amines). And the relative quantification of eachβ-lactam resistance gene in the study was changed with the increasing of AMX concentration.Furthermore the vertical gene transfer was the main driver for the spread of ARGs rather than horizontal transfer pathways in the system.
基金supported by the Natural Science Foundation of China(No.21876147)the Fundamental Research Funds for the Central Universities+1 种基金the Zhejiang University Global Partnership Fundthe China Scholarship Council and the Zhejiang University Academic Award for Outstanding Doctoral Candidates。
文摘Antibiotic resistance is a sword of Damocles that hangs over humans.In regards to airborne antibiotic resistance genes(AARGs),critical knowledge gaps still exist in the identification of hotspots and quantification of exposure levels in different environments.Here,we have studied the profiles of AARGs,mobile genetic elements(MGEs)and bacterial communities in various atmospheric environments by high throughput q PCR and 16S r RNA gene sequencing.We propose a new AARGs exposure dose calculation that uses short-term inhalation(STI).Swine farms and hospitals were high-risk areas where AARGs standardised abundance was more abundant than suburbs and urban areas.Additionally,resistance gene abundance in swine farm worker sputum was higher than that in healthy individuals in other environments.The correlation between AARGs with MGEs and bacteria was strong in suburbs but weak in livestock farms and hospitals.STI exposure analysis revealed that occupational intake of AARGs(via PM10)in swine farms and hospitals were 110 and 29 times higher than in suburbs,were 1.5×10^(4),5.6×10^(4)and 5.1×10^(2)copies,i.e.,61.9%,75.1%and 10.7%of the overall daily inhalation intake,respectively.Our study comprehensively compares environmental differences in AARGs to identify high-risk areas,and forwardly proposes the STI exposure dose of AARGs to guide risk assessment.
基金supported by the National Key Research and Development Plan from Ministry of Science and Technology of the People’s Republic of China(No.2020YFC1806902)the Alliance of International Science Organizations(No.ANSO-PA-2020-18).
文摘The global increased antibiotic resistance level in pathogenic microbes has posed a significant threat to human health.Fresh vegetables have been recognized to be an important vehicle of antibiotic resistance genes(ARGs)from environments to human beings.Phyllosphere ARGs have been indicated to be changed with plant species,yet the influence of plant cultivar on the phyllospheric resistome is still unclear.Here,we detected the ARGs and bacterial communities in the phyllosphere of two cultivars of cilantros and their corresponding soils using high-throughput quantitative PCR technique and bacterial 16S rRNA gene-based high-throughput sequencing,respectively.We further identified the potential bacterial pathogens and analyzed the effects of plant cultivar on ARGs,mobile genetic elements(MGEs),microbiome and potential bacterial pathogens.The results showed that the cultivars did not affect the ARG abundance and composition,but significantly shaped the abundance of MGEs and the composition structure of bacteria in the phyllosphere.The relative abundance of potential bacterial pathogenswas significantly higher in the phyllosphere than that in soils.Mantel test showed that the ARG patterns were significantly correlated to the patterns of potential bacterial pathogens.Our results suggested that the horizontal gene transfer of ARGs in the phyllosphere might be different between the two cultivars of cilantro and highlighted the higher risk of phyllospheric microorganisms compared with those in soils.These findings extend our knowledge on the vegetable microbiomes,ARGs,and potential pathogens,suggesting more agricultural and hygiene protocols are needed to control the risk of foodborne ARGs.
基金This work was supported by the National Natural Science Foundation of China Projects 32000346 and 32170495.
文摘There is now general concern about widespread antibiotic resistance,and growing evidence indicates that gut microbiota is critical in providing antibiotic resistance.Honeybee is an important pollinator;the incidence of antibiotic resistance genes in honeybee gut causes potential risks to not only its own health but also to public and animal health,for its potential disseminator role,thus receiving more attention from the public.Recent analysis results reveal that the gut of honeybee serves as a reservoir of antibiotic resistance genes,probably due to antibiotics application history in beekeeping and horizontal gene transfer from the highly polluted environment.These antibiotic resistance genes accumulate in the honeybee gut and could be transferred to the pathogen,even having the potential to spread during pollination,tending,social interactions,etc.Newly acquired resistance traits may cause fitness reduction in bacteria whereas facilitating adaptive evolution as well.This review outlines the current knowledge about the resistome in honeybee gut and emphasizes its role in antibiotic resistance dissemination.
基金This work was financially supported by the National Natural Science Foundation of China(No.51778006)the High-performance Computing Platform of Peking University。
文摘To meet the rapidly growing global demand for aquaculture products,large amounts of antibiotics were used in aquaculture,which might accelerate the evolution of antibiotic-resistant bacteria(ARB)and the propagation of antibiotic genes(ARGs).In our research,we revealed the ARGs profiles,their co-occurrence with mobile genetic elements(MGEs),and potential hosts in sediments of a crab pond wastewater purification system based on metagenomic analysis.The residual antibiotic seems to increase the propagation of ARGs in the crab pond,but there was no clear relationship between a given antibiotic type and the corresponding resistance genes.The effect of aquaculture on sediment was not as profound as that of other anthropogentic activities,but increased the relative abundance of sulfon-amide resistance gene.A higher abundance of MGEs,especially plasmid,increased the po-tential ARGs dissemination risk in crab and purification ponds.Multidrug and sulfonamide resistance genes had greater potential to transfer because they were more frequently carried by MGEs.The horizontal gene transfer was likely to occur among a variety of microorgan-isms,and various ARGs hosts including Pseudomonas,Acinetobacter,Escherichia,and Klebsiella were identified.Bacterial community influenced the composition of ARG hosts,and Pro-teobacteria was the predominant hosts.Overall,our study provides novel insights into the environmental risk of ARGs in sediments of aquaculture wastewater treatment system.
基金supported by the National Natural Science Foundation of China(Grant Nos.51938001,52170185 and 52070111)the China Postdoctoral Science Foundation(No.2022M721815)。
文摘Antimicrobial resistance(AMR)has emerged as a significant challenge in human health.Wastewater treatment plants(WWTPs),acting as a link between human activities and the environment,create ideal conditions for the selection and spread of antibiotic resistance genes(ARGs)and antibioticresistant bacteria(ARB).Unfortunately,current treatment processes are ineffective in removing ARGs,resulting in the release of large quantities of ARB and ARGs into the aquatic environment through WWTP effluents.This,in turn,leads to their dispersion and potential transmission to human through water and the food chain.To safeguard human and environmental health,it is crucial to comprehend the mechanisms by which WWTP effluent discharge influences the distribution and diffusion of ARGs in downstream waterbodies.In this study,we examine the latest researches on the antibiotic resistome in various waterbodies that have been exposed to WWTP effluent,highlighting the key influencing mechanisms.Furthermore,recommendations for future research and management strategies to control the dissemination of ARGs from WWTPs to the environment are provided,with the aim to achieve the“One Health”objective.
