[Objectives]This study was conducted to clarify the species,occurrence and distribution characteristics of sugarcane rust pathogens in low-latitude plateau sugarcane rust areas of Yunnan Province and the phylogenetic ...[Objectives]This study was conducted to clarify the species,occurrence and distribution characteristics of sugarcane rust pathogens in low-latitude plateau sugarcane rust areas of Yunnan Province and the phylogenetic relationship between the pathogens and that between them and other rust fungi of the genus Puccinia.[Methods]Fifty seven sugarcane rust samples collected from the sugarcane areas of Baoshan,Lincang,Menghai,Menglian,Ximeng,Lancang and Wenshan in Yunnan were subjected to molecular identification.[Results]The four sugarcane rust samples from Haiyin1 hao in Menghai,Yunnan Province belonged to orange rust of sugarcane,and the pathogen was Puccinia kuehnii Butler.;and other 53 samples of sugarcane rust belonged to brown rust of sugarcane,and the pathogen was Puccinia melanocephala Syd.et P.Syd.The rDNA sequences of other rust fungi from the genus Puccinia were downloaded from GenBank and used for the construction of an NJ tree for systematic evolution analysis together with the sequences obtained in this study.The results showed that the four P.kuehnii sequences obtained in this study were clustered with Puccinia polysora(GenBank accession number:GU058024)into one group,and they were close genetically;the 53 P.melanocephala sequences were clustered with P.nakanishikii(GenBank accession number:GU058002),P.rufipes(GenBank accession number:AJ296545),Aecidium deutziae(GenBank accession number:KU309317)and P.coronata(GenBank accession number:DQ354526)into one group,and they had a close genetic relationship;and the genetic relationship of the two species of sugarcane rust fungi identified in this study was relatively distant.[Conclusions]This study provides a scientific basis for sugarcane rust epidemic prediction,disease resistance breeding,and precise prevention and control.展开更多
[Objective]The paper was to investigate and identify new diseases in kiwifruit producing areas in Qiandongnan Prefecture to reduce the harm of diseases and ensure the quality of red-fleshed kiwifruit products.[Method]...[Objective]The paper was to investigate and identify new diseases in kiwifruit producing areas in Qiandongnan Prefecture to reduce the harm of diseases and ensure the quality of red-fleshed kiwifruit products.[Method]The pathogenic fungus was isolated from diseased leaves of redfleshed kiwifruit by tissue separation method,and DNA was sequenced by ribosomal rDNA-ITS(internal transcribed spacer)sequencing.Molecular evolutionary trees were built using MEGA4.0 software,and the pathogenic fungus was classified and identified combined with morphological obser-vation.[Result]Leaf tip blight was a new disease caused by Epicoccum sorghinum.It caused serious damage on red-fleshed kiwifruit.[Conclusion]The study supplements diseases of red-fleshed kiwifruit,and provides support for disease prevention and control in late stage.展开更多
In order to reduce the harm of diseases in red-fleshed kiwifruit in Qiandongnan Prefecture and ensure product quality, a new disease in the producing areas were investigated, and pathogen identification were carried o...In order to reduce the harm of diseases in red-fleshed kiwifruit in Qiandongnan Prefecture and ensure product quality, a new disease in the producing areas were investigated, and pathogen identification were carried out. The pathogen was isolated from diseased leaves by a tissue separation method. DNA sequencing was performed by the sequence analysis of ribosomal rDNA-ITS(Internal transcribed spacer) region, and a molecular evolutionary tree was constructed by the MEGA 4.0 software. The pathogenic fungus was classified and identified by combining morphological observation finally. The results showed that the dry blight disease in leaf tip was a new disease, which was caused by Epicoccum sorghinum, and it had a serious damage to red-fleshed kiwifruit.展开更多
[Objectives]The paper was to study molecular characterization,morphology and pathogenicity of Curvularia pseudobrachyspora,a new causal agent of leaf spot on banana.[Methods]Banana(Musa acuminate)leaves with streaks o...[Objectives]The paper was to study molecular characterization,morphology and pathogenicity of Curvularia pseudobrachyspora,a new causal agent of leaf spot on banana.[Methods]Banana(Musa acuminate)leaves with streaks or long ellipse-shaped lesions were sampled in an orchard of Danzhou City,Hainan Province,China in 2021.Fungus isolates were isolated from the diseased tissues and further identified as C.pseudobrachyspora based on morphological characteristics of colony,conidiophore and spore,phylogenetic analyses of the ITS region,GAPDH and TEF-1αgenes.[Results]In the pathogenicity test,the fungus re-isolated from inoculated leaves with necrotic lesions was identified morphologically and molecularly,fulfilling Koch's postulates.[Conclusions]C.pseudobrachyspora is a new pathogen causing leaf spot of banana in China and the world.展开更多
This study was conducted in order to determine the fungi and bacteria associated with tomato plants at Cameron Highlands Malaysia. The fungi which have been isolated and detected from tomato plants were: Fusarium oxys...This study was conducted in order to determine the fungi and bacteria associated with tomato plants at Cameron Highlands Malaysia. The fungi which have been isolated and detected from tomato plants were: Fusarium oxysporum, F. solani, F. acuminatum, Rhizoctonia solani, Colletotrichum boninense, C. acutatum and Phoma destructiva. The bacteria which have been isolated and detected from tomato plants were: Ralstonia solanacearum, Xanthomonas vesicatoria, X. gardneri and Pseudomonas syringae. While the most pathogenic fungi were C. boninense, P. destructive and F. oxysporum with the disease incidence (89.6%, 86.6%, 85.6%) respectively, the most pathogenic bacteria were X. vesicatoria and R. solanacearum with the disease incidence (96.6% and 87.6%) respectively.展开更多
Hazelnut husk brown rot has been identified as a new disease in Liaoning Province in recent years.The objective of this study as to identify the pathogen.[Method]In this study,a standard sample of hazelnut husk brown ...Hazelnut husk brown rot has been identified as a new disease in Liaoning Province in recent years.The objective of this study as to identify the pathogen.[Method]In this study,a standard sample of hazelnut husk brown rot was collected from Songmudao Base in Dalian City,Liaoning Province.The pathogen was identified by the studies of the morphology,pathogenicity,and analyses of ITS and LSU sequences.The pathogen was isolated and purified,which was confirmed by Koch’s postulates.The symptoms after inoculation were the same as those collected directly from a diseased tree,which showed that it was the pathogenic fungus.The cultural characteristics and conidia and the morphology of the pathogenic fungi were similar to those of Botrytis cinerea’s.The ITS sequences and LSU sequences were compared to the associated strain sequences in GenBank,with 100%identity to Botrytis cinerea(GenBank accession number:MN589848.1)and Botrytis cinerea(GenBank accession number:KU140653.1),respectively.The infection status of the pathogen on the hazelnut husks was also observed.The studies suggested that the pathogen leading to the hazelnut husk brown rot as a new disease in Liaoning Province was Botrytis cinerea.展开更多
[Objectives]The paper was to identify the causal agent of leaf spot of banana in Hainnan,China.[Methods]Fungus isolates were isolated from the diseased tissues,and morphological characteristics of colony and spore wer...[Objectives]The paper was to identify the causal agent of leaf spot of banana in Hainnan,China.[Methods]Fungus isolates were isolated from the diseased tissues,and morphological characteristics of colony and spore were observed.Furthermore,phylogenetic analyses and pathogenicity test were conducted to confirm the pathogen.[Results]The fungus isolates from the diseased tissues was identified as Curvularia geniculata.[Conclusions]C.geniculata is a new pathogen causing leaf spot of banana in Hainan,China.This finding will help to broaden the distribution and host range of C.geniculata,indicating that it poses potential damage to banana in China.展开更多
Endophthalmitis is a serious ophthalmic disease characterized by changes in the eye's posterior segment,such as hypopyon and intraocular inflammation,vitritis being a hallmark.Infection-caused endophthalmitis can ...Endophthalmitis is a serious ophthalmic disease characterized by changes in the eye's posterior segment,such as hypopyon and intraocular inflammation,vitritis being a hallmark.Infection-caused endophthalmitis can lead to irreversible vision loss,accompanied by eye pain or eye distention,and in the most severe cases the removal of the eyeball.Microorganisms such as bacteria,fungi,viruses,and parasites typically account for the disease and the entry pathways of the microbial can be divided into either endogenous or exogenous approaches,according to the origin of the etiological agents.Exogenous endophthalmitis can be derived from various occasions(such as postoperative complications or trauma)while endogenous endophthalmitis results from the bloodstream which carries pathogens to the eye.This review aims to summarize the application of new technology in pathogen identification of endophthalmitis so as to prevent the disease and better guide clinical diagnosis and treatment.展开更多
The rapid identification of pathogens is crucial in controlling the food quality and safety.The proposed system for the rapid and label-free identification of pathogens is based on the principle of laser scattering fr...The rapid identification of pathogens is crucial in controlling the food quality and safety.The proposed system for the rapid and label-free identification of pathogens is based on the principle of laser scattering from the bacterial microbes.The clinical prototype consists of three parts:the laser beam,photodetectors,and the data acquisition system.The bacterial testing sample was mixed with 10 mL distilled water and placed inside the machine chamber.When the bacterial microbes pass by the laser beam,the scattering of light occurs due to variation in size,shape,and morphology.Due to this reason,different types of pathogens show their unique light scattering patterns.The photo-detectors were arranged at the surroundings of the sample at different angles to collect the scattered light.The photodetectors convert the scattered light intensity into a voltage waveform.The waveform features were acquired by using the power spectral characteristics,and the dimensionality of extracted features was reduced by applying minimal-redundancy-maximal-relevance criterion(mRMR).A support vector machine(SVM)classifier was developed by training the selected power spectral features for the classification of three different bacterial microbes.The resulting average identification accuracies of E.faecalis,E.coli and S.aureus were 99%,87%,and 94%,respectively.The ove rall experimental results yield a higher accuracy of 93.6%,indicating that the proposed device has the potential for label-free identification of pathogens with simplicity,rapidity,and cost-effectiveness.展开更多
Severe sepsis causes organ dysfunction and continues to be the leading reason for pediatric death worldwide.Early recognition of sepsis could substantially promote precision treatment and reduce the risk of pediatric ...Severe sepsis causes organ dysfunction and continues to be the leading reason for pediatric death worldwide.Early recognition of sepsis could substantially promote precision treatment and reduce the risk of pediatric death.The host cellular response to infection during sepsis between adults and pediatrics could be significantly different.A growing body of studies focused on finding markers in pediatric sepsis in recent years using multi-omics approaches.This narrative review summarized the progress in studying pediatric sepsis biomarkers from genome,transcript,protein,and metabolite levels according to the omics technique that has been applied for biomarker screening.It is most likely not a single biomarker could work for precision diagnosis of sepsis,but a panel of markers and probably a combination of markers detected at multi-levels.Importantly,we emphasize the importance of group distinction of infectious agents in sepsis patients for biomarker identification,because the host response to infection of bacteria,virus,or fungus could be substantially different and thus the results of biomarker screening.Further studies on the investigation of sepsis biomarkers that were caused by a specific group of infectious agents should be encouraged in the future,which will better improve the clinical execution of personalized medicine for pediatric sepsis.展开更多
基金Supported by China Agriculture Research System of MOF and MARA(CARS-170303)Joint Special Project of Basic Agricultural Research in Yunnan Province(2018FG001-029)+1 种基金"Yunling Industrial Technology Leading Talents"Training Project(2018LJRC56)Special Fund for the Construction of Modern Agricultural Industry Technology System in Yunnan Province(YNGZTX-4-92)。
文摘[Objectives]This study was conducted to clarify the species,occurrence and distribution characteristics of sugarcane rust pathogens in low-latitude plateau sugarcane rust areas of Yunnan Province and the phylogenetic relationship between the pathogens and that between them and other rust fungi of the genus Puccinia.[Methods]Fifty seven sugarcane rust samples collected from the sugarcane areas of Baoshan,Lincang,Menghai,Menglian,Ximeng,Lancang and Wenshan in Yunnan were subjected to molecular identification.[Results]The four sugarcane rust samples from Haiyin1 hao in Menghai,Yunnan Province belonged to orange rust of sugarcane,and the pathogen was Puccinia kuehnii Butler.;and other 53 samples of sugarcane rust belonged to brown rust of sugarcane,and the pathogen was Puccinia melanocephala Syd.et P.Syd.The rDNA sequences of other rust fungi from the genus Puccinia were downloaded from GenBank and used for the construction of an NJ tree for systematic evolution analysis together with the sequences obtained in this study.The results showed that the four P.kuehnii sequences obtained in this study were clustered with Puccinia polysora(GenBank accession number:GU058024)into one group,and they were close genetically;the 53 P.melanocephala sequences were clustered with P.nakanishikii(GenBank accession number:GU058002),P.rufipes(GenBank accession number:AJ296545),Aecidium deutziae(GenBank accession number:KU309317)and P.coronata(GenBank accession number:DQ354526)into one group,and they had a close genetic relationship;and the genetic relationship of the two species of sugarcane rust fungi identified in this study was relatively distant.[Conclusions]This study provides a scientific basis for sugarcane rust epidemic prediction,disease resistance breeding,and precise prevention and control.
基金Supported by Provincial,Prefecture and College Science and Technology Cooperation Agreement Project of Science and Technology Department of Guizhou Province"Identification and Control Analysis of Kiwifruit Diseases and Insect Pests in Qiandongnan Prefecture:(QKH H[2017]7178)。
文摘[Objective]The paper was to investigate and identify new diseases in kiwifruit producing areas in Qiandongnan Prefecture to reduce the harm of diseases and ensure the quality of red-fleshed kiwifruit products.[Method]The pathogenic fungus was isolated from diseased leaves of redfleshed kiwifruit by tissue separation method,and DNA was sequenced by ribosomal rDNA-ITS(internal transcribed spacer)sequencing.Molecular evolutionary trees were built using MEGA4.0 software,and the pathogenic fungus was classified and identified combined with morphological obser-vation.[Result]Leaf tip blight was a new disease caused by Epicoccum sorghinum.It caused serious damage on red-fleshed kiwifruit.[Conclusion]The study supplements diseases of red-fleshed kiwifruit,and provides support for disease prevention and control in late stage.
基金Supported by Province,Prefecture and School Science and Technology Cooperation Agreement Project of Science and Technology Department of Guizhou Province (QKH H Z[2017]7178)The Science and Technologyof Guizhou Province (2017-1166)。
文摘In order to reduce the harm of diseases in red-fleshed kiwifruit in Qiandongnan Prefecture and ensure product quality, a new disease in the producing areas were investigated, and pathogen identification were carried out. The pathogen was isolated from diseased leaves by a tissue separation method. DNA sequencing was performed by the sequence analysis of ribosomal rDNA-ITS(Internal transcribed spacer) region, and a molecular evolutionary tree was constructed by the MEGA 4.0 software. The pathogenic fungus was classified and identified by combining morphological observation finally. The results showed that the dry blight disease in leaf tip was a new disease, which was caused by Epicoccum sorghinum, and it had a serious damage to red-fleshed kiwifruit.
基金Supported by High level Talents Project of Hainan Provincial Natural Science Foundation of China(2019RC278)The Earmarked Fund for CARS(CARS-31)。
文摘[Objectives]The paper was to study molecular characterization,morphology and pathogenicity of Curvularia pseudobrachyspora,a new causal agent of leaf spot on banana.[Methods]Banana(Musa acuminate)leaves with streaks or long ellipse-shaped lesions were sampled in an orchard of Danzhou City,Hainan Province,China in 2021.Fungus isolates were isolated from the diseased tissues and further identified as C.pseudobrachyspora based on morphological characteristics of colony,conidiophore and spore,phylogenetic analyses of the ITS region,GAPDH and TEF-1αgenes.[Results]In the pathogenicity test,the fungus re-isolated from inoculated leaves with necrotic lesions was identified morphologically and molecularly,fulfilling Koch's postulates.[Conclusions]C.pseudobrachyspora is a new pathogen causing leaf spot of banana in China and the world.
文摘This study was conducted in order to determine the fungi and bacteria associated with tomato plants at Cameron Highlands Malaysia. The fungi which have been isolated and detected from tomato plants were: Fusarium oxysporum, F. solani, F. acuminatum, Rhizoctonia solani, Colletotrichum boninense, C. acutatum and Phoma destructiva. The bacteria which have been isolated and detected from tomato plants were: Ralstonia solanacearum, Xanthomonas vesicatoria, X. gardneri and Pseudomonas syringae. While the most pathogenic fungi were C. boninense, P. destructive and F. oxysporum with the disease incidence (89.6%, 86.6%, 85.6%) respectively, the most pathogenic bacteria were X. vesicatoria and R. solanacearum with the disease incidence (96.6% and 87.6%) respectively.
基金This work was financially supported by the Liaoning Provincial Natural Science Foundation of China(Grant No.2021-MS-057).
文摘Hazelnut husk brown rot has been identified as a new disease in Liaoning Province in recent years.The objective of this study as to identify the pathogen.[Method]In this study,a standard sample of hazelnut husk brown rot was collected from Songmudao Base in Dalian City,Liaoning Province.The pathogen was identified by the studies of the morphology,pathogenicity,and analyses of ITS and LSU sequences.The pathogen was isolated and purified,which was confirmed by Koch’s postulates.The symptoms after inoculation were the same as those collected directly from a diseased tree,which showed that it was the pathogenic fungus.The cultural characteristics and conidia and the morphology of the pathogenic fungi were similar to those of Botrytis cinerea’s.The ITS sequences and LSU sequences were compared to the associated strain sequences in GenBank,with 100%identity to Botrytis cinerea(GenBank accession number:MN589848.1)and Botrytis cinerea(GenBank accession number:KU140653.1),respectively.The infection status of the pathogen on the hazelnut husks was also observed.The studies suggested that the pathogen leading to the hazelnut husk brown rot as a new disease in Liaoning Province was Botrytis cinerea.
基金High-level Talents Project of Hainan Provincial Natural Science Foundation of China(2019RC278)The Earmarked Fund for CARS(CARS-31)。
文摘[Objectives]The paper was to identify the causal agent of leaf spot of banana in Hainnan,China.[Methods]Fungus isolates were isolated from the diseased tissues,and morphological characteristics of colony and spore were observed.Furthermore,phylogenetic analyses and pathogenicity test were conducted to confirm the pathogen.[Results]The fungus isolates from the diseased tissues was identified as Curvularia geniculata.[Conclusions]C.geniculata is a new pathogen causing leaf spot of banana in Hainan,China.This finding will help to broaden the distribution and host range of C.geniculata,indicating that it poses potential damage to banana in China.
文摘Endophthalmitis is a serious ophthalmic disease characterized by changes in the eye's posterior segment,such as hypopyon and intraocular inflammation,vitritis being a hallmark.Infection-caused endophthalmitis can lead to irreversible vision loss,accompanied by eye pain or eye distention,and in the most severe cases the removal of the eyeball.Microorganisms such as bacteria,fungi,viruses,and parasites typically account for the disease and the entry pathways of the microbial can be divided into either endogenous or exogenous approaches,according to the origin of the etiological agents.Exogenous endophthalmitis can be derived from various occasions(such as postoperative complications or trauma)while endogenous endophthalmitis results from the bloodstream which carries pathogens to the eye.This review aims to summarize the application of new technology in pathogen identification of endophthalmitis so as to prevent the disease and better guide clinical diagnosis and treatment.
基金the National Key Special Science Program(No.2017YFA0205301)the National Natural Science Foundation of China(Nos.61527806,61971187,61901168,81902153,61971216 and 61401217)+3 种基金the Clinical Advanced Technology of Social Development Projects in Jiangsu Province(No.BE2018695)Natural Science Foundation of Jiangsu Province(No.BK20140900)key project supported by Medical Science and Technology Development Foundation,Nanjing Department of Health(Nos.ZKX18029 and ZKX18016)the joint fund of Southeast University and Nanjing Medical University。
文摘The rapid identification of pathogens is crucial in controlling the food quality and safety.The proposed system for the rapid and label-free identification of pathogens is based on the principle of laser scattering from the bacterial microbes.The clinical prototype consists of three parts:the laser beam,photodetectors,and the data acquisition system.The bacterial testing sample was mixed with 10 mL distilled water and placed inside the machine chamber.When the bacterial microbes pass by the laser beam,the scattering of light occurs due to variation in size,shape,and morphology.Due to this reason,different types of pathogens show their unique light scattering patterns.The photo-detectors were arranged at the surroundings of the sample at different angles to collect the scattered light.The photodetectors convert the scattered light intensity into a voltage waveform.The waveform features were acquired by using the power spectral characteristics,and the dimensionality of extracted features was reduced by applying minimal-redundancy-maximal-relevance criterion(mRMR).A support vector machine(SVM)classifier was developed by training the selected power spectral features for the classification of three different bacterial microbes.The resulting average identification accuracies of E.faecalis,E.coli and S.aureus were 99%,87%,and 94%,respectively.The ove rall experimental results yield a higher accuracy of 93.6%,indicating that the proposed device has the potential for label-free identification of pathogens with simplicity,rapidity,and cost-effectiveness.
基金Research and Application of Clinical Diagnosis and Treatment Technology in Capital,Grant/Award Number:Z211100002921063Beijing Natural Science Foundation,Grant/Award Number:7232052。
文摘Severe sepsis causes organ dysfunction and continues to be the leading reason for pediatric death worldwide.Early recognition of sepsis could substantially promote precision treatment and reduce the risk of pediatric death.The host cellular response to infection during sepsis between adults and pediatrics could be significantly different.A growing body of studies focused on finding markers in pediatric sepsis in recent years using multi-omics approaches.This narrative review summarized the progress in studying pediatric sepsis biomarkers from genome,transcript,protein,and metabolite levels according to the omics technique that has been applied for biomarker screening.It is most likely not a single biomarker could work for precision diagnosis of sepsis,but a panel of markers and probably a combination of markers detected at multi-levels.Importantly,we emphasize the importance of group distinction of infectious agents in sepsis patients for biomarker identification,because the host response to infection of bacteria,virus,or fungus could be substantially different and thus the results of biomarker screening.Further studies on the investigation of sepsis biomarkers that were caused by a specific group of infectious agents should be encouraged in the future,which will better improve the clinical execution of personalized medicine for pediatric sepsis.
