Background The importance of sheep breeding in the Mediterranean part of the eastern Adriatic has a long tradition since its arrival during the Neolithic migrations.Sheep production system is extensive and generally c...Background The importance of sheep breeding in the Mediterranean part of the eastern Adriatic has a long tradition since its arrival during the Neolithic migrations.Sheep production system is extensive and generally carried out in traditional systems without intensive systematic breeding programmes for high uniform trait production(carcass,wool and milk yield).Therefore,eight indigenous Croatian sheep breeds from eastern Adriatic treated here as metapopulation(EAS),are generally considered as multipurpose breeds(milk,meat and wool),not specialised for a particular type of production,but known for their robustness and resistance to certain environmental conditions.Our objective was to identify genomic regions and genes that exhibit patterns of positive selection signatures,decipher their biological and productive functionality,and provide a"genomic"characterization of EAS adaptation and determine its production type.Results We identified positive selection signatures in EAS using several methods based on reduced local variation,linkage disequilibrium and site frequency spectrum(eROHi,iHS,nSL and CLR).Our analyses identified numerous genomic regions and genes(e.g.,desmosomal cadherin and desmoglein gene families)associated with environmental adaptation and economically important traits.Most candidate genes were related to meat/production and health/immune response traits,while some of the candidate genes discovered were important for domestication and evolutionary processes(e.g.,HOXa gene family and FSIP2).These results were also confirmed by GO and QTL enrichment analysis.Conclusions Our results contribute to a better understanding of the unique adaptive genetic architecture of EAS and define its productive type,ultimately providing a new opportunity for future breeding programmes.At the same time,the numerous genes identified will improve our understanding of ruminant(sheep)robustness and resistance in the harsh and specific Mediterranean environment.展开更多
Colorectal cancer(CRC)belongs to the class of significantly malignant tumors found in humans.Recently,dysregulated fatty acid metabolism(FAM)has been a topic of attention due to its modulation in cancer,specifically C...Colorectal cancer(CRC)belongs to the class of significantly malignant tumors found in humans.Recently,dysregulated fatty acid metabolism(FAM)has been a topic of attention due to its modulation in cancer,specifically CRC.However,the regulatory FAM pathways in CRC require comprehensive elucidation.Methods:The clinical and gene expression data of 175 fatty acid metabolic genes(FAMGs)linked with colon adenocarcinoma(COAD)and normal cornerstone genes were gathered through The Cancer Genome Atlas(TCGA)-COAD corroborating with the Molecular Signature Database v7.2(MSigDB).Initially,crucial prognostic genes were selected by uni-and multi-variate Cox proportional regression analyses;then,depending upon these identified signature genes and clinical variables,a nomogram was generated.Lastly,to assess tumor immune characteristics,concomitant evaluation of tumor immune evasion/risk scoring were elucidated.Results:A 8-gene signature,including ACBD4,ACOX1,CD36,CPT2,ELOVL3,ELOVL6,ENO3,and SUCLG2,was generated,and depending upon this,CRC patients were categorized within high-risk(H-R)and low-risk(L-R)cohorts.Furthermore,risk and age-based nomograms indicated moderate discrimination and good calibration.The data confirmed that the 8-gene model efficiently predicted CRC patients’prognosis.Moreover,according to the conjoint analysis of tumor immune evasion and the risk scorings,the H-R cohort had an immunosuppressive tumor microenvironment,which caused a substandard prognosis.Conclusion:This investigation established a FAMGs-based prognostic model with substantially high predictive value,providing the possibility for improved individualized treatment for CRC individuals.展开更多
In this editorial,we comment on an original article by Duan et al.Despite ad-vancements in the diagnosis and treatment of hepatocellular carcinoma(HCC),the identification of suitable prognostic factors remains challen...In this editorial,we comment on an original article by Duan et al.Despite ad-vancements in the diagnosis and treatment of hepatocellular carcinoma(HCC),the identification of suitable prognostic factors remains challenging.In their paper,Duan et al identified long non-coding RNAs(LncRNAs)to quantify ge-nomic instability(GI)by combining LncRNA expression and somatic mutation profiles.They confirmed that the GI-derived LncRNA signature(GI-LncSig)could be an independent prognostic factor with the area under the curve of 0.773.Fur-thermore,the authors stated that GI-LncSig may have a better predictive perfor-mance than TP53 mutation status alone.However,studies exploring genetic markers for predicting the prognosis of HCC are crucial for identifying thera-peutic targets and enhancing diagnostic and treatment strategies to mitigate the global burden of liver cancer.展开更多
A metropolitan city such as Los Angeles (LA) is an ideal study site with a very high population density, and it houses at least 3 treatment plants where sewage is treated preliminarily and then progressing to tertiary...A metropolitan city such as Los Angeles (LA) is an ideal study site with a very high population density, and it houses at least 3 treatment plants where sewage is treated preliminarily and then progressing to tertiary treatment before discharging into the LA River. We will gain a better understanding of the water quality in the LA River and the nitrate load in the watershed system by examining the influence of waste water treatment plants (WWTPs). The goal of this study is to pinpoint the exact source of nitrate in the LA River using the isotope signatures. We have selected sampling locations both upstream and downstream of the WWTP. This serves to monitor nitrate levels, aiding in the assessment of treatment plant effectiveness, pinpointing nitrate pollution sources, and ensuring compliance with environmental regulations. The research explores the isotopic composition of NO3 in relation to atmospheric nitrogen and Vienna Standard Mean Ocean Water, shedding light on the contributions from various sources such as manure, sewage, soil organic nitrogen, and nitrogen fertilizers. Specifically, there is a change in the δ15NAir value between the dry and wet seasons. The isotope values in the Tillman WWTP sample changed between dry and wet seasons. Notably, the presence of nitrate originating from manure and sewage is consistent across seasons, emphasizing the significant impact of anthropogenic and agricultural activities on water quality. This investigation contributes to the broader understanding of nitrogen cycling in urban water bodies, particularly in the context of wastewater effluent discharge. The findings hold implications for water quality management and highlight the need for targeted interventions to mitigate the impact of nitrogen-containing compounds on aquatic ecosystems. Overall, the study provides a valuable framework for future research and environmental stewardship efforts aimed at preserving the health and sustainability of urban water resources. This data informs decisions regarding additional treatment or mitigation actions to safeguard downstream water quality and ecosystem health.展开更多
Location awareness in wireless networks is essential for emergency services,navigation,gaming,and many other applications.This article presents a method for source localization based on measuring the amplitude-phase d...Location awareness in wireless networks is essential for emergency services,navigation,gaming,and many other applications.This article presents a method for source localization based on measuring the amplitude-phase distribution of the field at the base station.The existing scatterers in the target area create unique scattered field interference at each source location.The unique field interference at each source location results in a unique field signature at the base station which is used for source localization.In the proposed method,the target area is divided into a grid with a step of less than half the wavelength.Each grid node is characterized by its field signature at the base station.Field signatures corresponding to all nodes are normalized and stored in the base station as fingerprints for source localization.The normalization of the field signatures avoids the need for time synchronization between the base station and the source.When a source transmits signals,the generated field signature at the base station is normalized and then correlated with the stored fingerprints.The maximum correlation value is given by the node to which the source is the closest.Numerical simulations and results of experiments on ultrasonic waves in the air show that the ultrasonic source is correctly localized using broadband field signatures with one base station and without time synchronization.The proposed method is potentially applicable for indoor localization and navigation of mobile robots.展开更多
This paper presents a novel approach to proxy blind signatures in the realm of quantum circuits,aiming to enhance security while safeguarding sensitive information.The main objective of this research is to introduce a...This paper presents a novel approach to proxy blind signatures in the realm of quantum circuits,aiming to enhance security while safeguarding sensitive information.The main objective of this research is to introduce a quantum proxy blind signature(QPBS)protocol that utilizes quantum logical gates and quantum measurement techniques.The QPBS protocol is constructed by the initial phase,proximal blinding message phase,remote authorization and signature phase,remote validation,and de-blinding phase.This innovative design ensures a secure mechanism for signing documents without revealing the content to the proxy signer,providing practical security authentication in a quantum environment under the assumption that the CNOT gates are securely implemented.Unlike existing approaches,our proposed QPBS protocol eliminates the need for quantum entanglement preparation,thus simplifying the implementation process.To assess the effectiveness and robustness of the QPBS protocol,we conduct comprehensive simulation studies in both ideal and noisy quantum environments on the IBM quantum cloud platform.The results demonstrate the superior performance of the QPBS algorithm,highlighting its resilience against repudiation and forgeability,which are key security concerns in the realm of proxy blind signatures.Furthermore,we have established authentic security thresholds(82.102%)in the presence of real noise,thereby emphasizing the practicality of our proposed solution.展开更多
Genomic profiling in postmortem brain from autistic individuals has consistently revealed convergent molecular changes.What drives these changes and how they relate to genetic susceptibility in this complex condition ...Genomic profiling in postmortem brain from autistic individuals has consistently revealed convergent molecular changes.What drives these changes and how they relate to genetic susceptibility in this complex condition are not well understood.We performed deep single-nucleus RNA sequencing(snRNA-seq)to examine cell composition and transcriptomics,identifying dysregulation of cell type-specific gene regulatory networks(GRNs)in autism spectrum disorder(ASD).展开更多
Largemouth bass(Micropterus salmoides) is an economically important fish species in North America, Europe, and China. Various genetic improvement programs and domestication processes have modified its genome sequence ...Largemouth bass(Micropterus salmoides) is an economically important fish species in North America, Europe, and China. Various genetic improvement programs and domestication processes have modified its genome sequence through selective pressure, leaving nucleotide signals that can be detected at the genomic level. In this study,we sequenced 149 largemouth bass fish, including protospecies(imported from the US) and improved breeds(four domestic breeding populations from China). We detected genomic regions harboring certain genes associated with improved traits, which may be useful molecular markers for practical domestication, breeding, and selection. Subsequent analyses of genetic diversity and population structure revealed that the improved breeds have undergone more rigorous genetic changes. Through selective signal analysis, we identified hundreds of putative selective sweep regions in each largemouth bass line. Interestingly, we predicted 103 putative candidate genes potentially subjected to selection,including several associated with growth(psst1 and grb10), early development(klf9, sp4, and sp8), and immune traits(pkn2, sept2, bcl6, and ripk2). These candidate genes represent potential genomic landmarks that could be used to improve important traits of biological and commercial interest. In summary, this study provides a genome-wide map of genetic variations and selection footprints in largemouth bass, which may benefit genetic studies and accelerate genetic improvement of this economically important fish.展开更多
Understanding the sensitivity of tidal flats to environmental changes is challenging.Currently,most studies rely on process-based models to systematically explain the morphodynamic evolution of tidal flats.In this stu...Understanding the sensitivity of tidal flats to environmental changes is challenging.Currently,most studies rely on process-based models to systematically explain the morphodynamic evolution of tidal flats.In this study,we proposed an alternative empirical approach to explore tidal flat dynamics using statistical indices based on long-term time series of daily surface elevation development.Surface elevation dynamic(SED)indices focus on the magnitude and period of surface elevation changes,while morphodynamic signature(MDS)indices relate sediment dynamics to environmental drivers.The statistical analyses were applied to an intervention site in the Netherlands to determine the effect of recently constructed groynes on the tidal flat.Using these analyses,we were able to(1)detect a reduction in the daily SED and(2)determine that the changes in the daily SED were predominantly caused by the reduction in wave impact between the groynes rather than the reduction in tidal currents.Overall,the presented results showed that the combination of novel statistical indices provides new insights into the trajectories of tidal flats,ecosystem functioning,and sensitivity to physical drivers(wind and tides).Finally,we suggested how the SED and MDS indices may help to explore the future trajectories and climate resilience of intertidal habitats.展开更多
Hazelnut(Corylus spp.)is known as one of the four famous tree nuts in the world due to its pleasant taste and nutritional benefits.However,hazelnut promotion worldwide is increasingly challenged by global climate chan...Hazelnut(Corylus spp.)is known as one of the four famous tree nuts in the world due to its pleasant taste and nutritional benefits.However,hazelnut promotion worldwide is increasingly challenged by global climate change,limiting its production to a few regions.Focusing on the eurytopic Section Phyllochlamys,we conducted whole-genome resequencing of 125 diverse accessions from five geo-ecological zones in Eurasia to elucidate the genomic basis of adaptation and improvement.Population structure inference outlined five distinct genetic lineages corresponding to climate conditions and breeding background,and highlighted the differentiation between European and Asian lineages.Demographic dynamics and ecological niche modeling revealed that Pleistocene climatic oscillations dominantly shaped the extant genetic patterns,and multiple environmental factors have contributed to the lineage divergence.Whole-genome scans identified 279,111,and 164 selective sweeps that underlie local adaptation in Corylus heterophylla,Corylus kweichowensis,and Corylus yunnanensis,respectively.Relevant positively selected genes were mainly involved in regulating signaling pathways,growth and development,and stress resistance.The improvement signatures of hybrid hazelnut were concentrated in 312 and 316 selected genes,when compared to C.heterophylla and Corylus avellana,respectively,including those that regulate protein polymerization,photosynthesis,and response to water deprivation.Among these loci,22 candidate genes were highly associated with the regulation of biological quality.Our study provides insights into evolutionary processes and the molecular basis of how sibling species adapt to contrasting environments,and offers valuable resources for future climate-resilient breeding.展开更多
Verifiably encrypted signatures are employed when a signer wants to sign a message for a verifier but does not want the verifier to possess his signature on the message until some certain requirements of his are satis...Verifiably encrypted signatures are employed when a signer wants to sign a message for a verifier but does not want the verifier to possess his signature on the message until some certain requirements of his are satisfied. This paper presented new verifiably encrypted signatures from bilinear pairings. The proposed signatures share the properties of simplicity and efficiency with existing verifiably encrypted signature schemes. To support the proposed scheme, it also exhibited security proofs that do not use random oracle assumption. For existential unforgeability, there exist tight security reductions from the proposed verifiably encrypted signature scheme to a strong but reasonable computational assumption.展开更多
The framework of digital signature based on qualified certificates and X. 509 architecture is known to have many security risks. Moreover, the fraud prevention mechanism is fragile and does not provide strong guarante...The framework of digital signature based on qualified certificates and X. 509 architecture is known to have many security risks. Moreover, the fraud prevention mechanism is fragile and does not provide strong guarantees that can be necessary for flow of legal documents. Mediated signatures have been proposed as a mechanism to effectively disable signature cards. In this paper we propose further mechanisms that can be applied on top of mediated RSA, compatible with the standard format, but providing security guarantees even in the case when RSA becomes broken or the keys are compromised. The solution is immune tokleptographic attacks as only deterministic algorithms are used on user＇s side.展开更多
Based on analyzing the limit of Ziolkowski＇s bubble oscillation formulation,a new model with various physical factors is established to simulate air gun signatures fo marine seismic exploration.The practical effects ...Based on analyzing the limit of Ziolkowski＇s bubble oscillation formulation,a new model with various physical factors is established to simulate air gun signatures fo marine seismic exploration.The practical effects of physical factors,such as heat transfe across the bubble wall,air gun port throttling,vertical rise of the bubble,fluid viscosity,and the existence of the air gun body were all taken into account in the new model.Compared with Ziolkowski＇s model,the signatures simulated by the new model,with small peak amplitude and rapid decay of bubble oscillation,are more consistent with actual signatures The experiment analysis indicates：（1）gun port throttling controls the peak amplitude of ai gun pulse;（2）since the hydrostatic pressure decreases when the bubble rises,the bubble oscillation period changes;（3）heat transfer and fluid viscosity are the main factors tha explain the bubble oscillation damping.展开更多
Cloud storage is one of the main application of the cloud computing.With the data services in the cloud,users is able to outsource their data to the cloud,access and share their outsourced data from the cloud server a...Cloud storage is one of the main application of the cloud computing.With the data services in the cloud,users is able to outsource their data to the cloud,access and share their outsourced data from the cloud server anywhere and anytime.However,this new paradigm of data outsourcing services also introduces new security challenges,among which is how to ensure the integrity of the outsourced data.Although the cloud storage providers commit a reliable and secure environment to users,the integrity of data can still be damaged owing to the carelessness of humans and failures of hardwares/softwares or the attacks from external adversaries.Therefore,it is of great importance for users to audit the integrity of their data outsourced to the cloud.In this paper,we first design an auditing framework for cloud storage and proposed an algebraic signature based remote data possession checking protocol,which allows a third-party to auditing the integrity of the outsourced data on behalf of the users and supports unlimited number of verifications.Then we extends our auditing protocol to support data dynamic operations,including data update,data insertion and data deletion.The analysis and experiment results demonstrate that our proposed schemes are secure and efficient.展开更多
Humans can sense, weigh and grasp different objects, deduce their physical properties at the same time, and exert appropriate forces – a challenging task for modern robots. Studying the mechanics of human grasping ob...Humans can sense, weigh and grasp different objects, deduce their physical properties at the same time, and exert appropriate forces – a challenging task for modern robots. Studying the mechanics of human grasping objects will play a supplementary role in visual-based robot object processing. These tools require large-scale tactile data sets with high spatial resolution. However, there is no large human-grasped tactile data set covering the whole hand, because dense coverage of the human hand with tactile sensors is challenging. Hence, the capability of observing and learning from successful daily humanobject interactions is the long-term goal of aiding the development of robots and prosthetics.展开更多
The aim of this study was to detect evidence for signatures of recent selection in the Jinhua pig genome.These results can be useful to better understand the regions under selection in Jinhua pigs and might shed some ...The aim of this study was to detect evidence for signatures of recent selection in the Jinhua pig genome.These results can be useful to better understand the regions under selection in Jinhua pigs and might shed some lights on groups of genes that control production traits.In the present study,we performed extended haplotype homozygosity(EHH)tests to identify significant core regions in 202 Jinhua pigs.A total of 26161 core regions spanning 636.42 Mb were identified,which occupied approximately 28%of the genome across all autosomes,and 1158 significant(P<0.01)core haplotypes were selected.Genes in these regions were related to several economically important traits,including meat quality,reproduction,immune responses and exterior traits.A panel of genes including ssc-mir-365-2,KDM8,RABEP2,GSG1L,RHEB,RPH3AL and a signal pathway of PI3K-Akt were detected with the most extreme P-values.The findings in our study could draw a comparatively genome-wide map of selection signature in the pig genome,and also help to detect functional candidate genes under positive selection for further genetic and breeding research in Jinhua and other pigs.展开更多
The intricate “orchestered molecular conversation” between the host and gut microbiome is one of the most dynamic research areas in recent years. The rhythmic chemical cross talk in the form of bioactive metabolites...The intricate “orchestered molecular conversation” between the host and gut microbiome is one of the most dynamic research areas in recent years. The rhythmic chemical cross talk in the form of bioactive metabolites and signalling molecules synthesized by gut microbiome plays a significant role for the modulation of human health in diversified ways. They are recognized as low molecular weight (LMW) molecules having versatile chemical attributes. They possess magnificent capability of interacting with surrounding environment and controlling the genes for various genetic, biochemical and physiological functions for maintaining the homeostasis that is now-a-days termed as “small molecules microbes originated (SMOM) homeostasis” in the host. These metabolic signatures have close structural and functional resemblance with small molecules synthesized by host eukaryotic cells and dietary components. Therefore, they may be considered as universalized metabolites contributing to the remarkable phenomenon of epigenetic regulation, cell to cell communication and stability of genome manifesting the overall growth and development of the host and known as “metabiotics”. The wide panorama of utilization of probiotics is continuously expanding and conferring the major health benefits through metabiotic components are gaining tremendous momentum therefore recognized as “hidden soldiers” of the body. Therefore firstly, we outline the need and types of metabiotic molecules and depicting their role in human health. Then, we summarize their preventive and therapeutic avenues in various diseases and finally, we propose the current technological interventions, bottlenecks and future perspectives in this field that are implied for accelerating their comprehensive understanding and utilization at industrial scale.展开更多
ISDTM, based on an augmented Allen's interval temporal logic (ITL) and first-order predicate calculus, is a formal temporal model for representing intrusion signatures. It is augmented with some real time extensio...ISDTM, based on an augmented Allen's interval temporal logic (ITL) and first-order predicate calculus, is a formal temporal model for representing intrusion signatures. It is augmented with some real time extensions which enhance the expressivity. Intrusion scenarios usually are the set of events and system states, where- the temporal sequence is their basic relation. Intrusion signatures description, therefore , is to represent such temporal relations in a sense. While representing these signatures, ISDTM decomposes the intrusion process into the sequence of events according to their relevant intervals, and then specifies network states in these Intervals. The uncertain intrusion signatures as well as basic temporal modes of events, which consist of the parallel mode, the sequential mode and the hybrid mode, can be succinctly and naturally represented in ISDTM. Mode chart is the visualization of intrusion signatures in ISDTM, which makes the formulas more readable. The intrusion signatures descriptions in ISDTM have advantages of compact construct, concise syntax, scalability and easy implementation.展开更多
This paper presents two systems for recognizing static signs (digits) from American Sign Language (ASL). These systems avoid the use color marks, or gloves, using instead, low-pass and high-pass filters in space and f...This paper presents two systems for recognizing static signs (digits) from American Sign Language (ASL). These systems avoid the use color marks, or gloves, using instead, low-pass and high-pass filters in space and frequency domains, and color space transformations. First system used rotational signatures based on a correlation operator;minimum distance was used for the classification task. Second system computed the seven Hu invariants from binary images;these descriptors fed to a Multi-Layer Perceptron (MLP) in order to recognize the 9 different classes. First system achieves 100% of recognition rate with leaving-one-out validation and second experiment performs 96.7% of recognition rate with Hu moments and 100% using 36 normalized moments and k-fold cross validation.展开更多
Information on rare earth elements(REEs)in soils and plants of the Qinghai-Tibet Plateau is very limited.Therefore,in this study,we performed field sampling to explore the geochemical signatures and human health risk ...Information on rare earth elements(REEs)in soils and plants of the Qinghai-Tibet Plateau is very limited.Therefore,in this study,we performed field sampling to explore the geochemical signatures and human health risk of REEs in soils and plants of the northeastern Qinghai-Tibet Plateau,China.A total of 127 soil samples and 127 plant samples were collected from the northeastern Qinghai-Tibet Plateau to acquire the geochemical signatures and related human health risks of REEs.The mean total concentrations of REEs in soils and plants of the study area reached 178.55 and 10.06 mg/kg,respectively.The light REEs in soils and plants accounted for 76%and 77%of the total REEs,respectively.REEs showed significantly homogenous distribution in soils but inhomogeneous distribution in plants of the study area.Characteristic parameters indicated that light REEs were enriched and fractionated significantly,while heavy REEs were moderately fractionated in soils and plants.REEs in soils and plants showed significantly negative Europium anomaly.Cerium showed slightly positive anomaly in plants and slight anomaly in soils.The normalized distribution patterns of REEs were generally similar in the analyzed soils and the corresponding plants of the study area.The average bio-concentration factor of REEs ranged from 0.0478(Scandium)to 0.0604(Europium),confirming a small accumulation of REEs by plants.Health risks caused by REEs in soils and plants were negligible,while risks for adults were lower than those for children.This study provides important information on REEs in soils and plants of the northeastern Qinghai-Tibet Plateau.展开更多
基金supported by Croatian Science Foundation project IP-2018–01-8708-Application of NGS methods in the assessment of genomic variability in ruminants–“ANAGRAMS”the EU Operational Program Competitiveness and Cohesion 2014–2020 project KK.01.1.1.04.0058—Potential of microencapsulation in cheese productionthe project No.QK1919156 of the Ministry of Agriculture,Czech Republic.
文摘Background The importance of sheep breeding in the Mediterranean part of the eastern Adriatic has a long tradition since its arrival during the Neolithic migrations.Sheep production system is extensive and generally carried out in traditional systems without intensive systematic breeding programmes for high uniform trait production(carcass,wool and milk yield).Therefore,eight indigenous Croatian sheep breeds from eastern Adriatic treated here as metapopulation(EAS),are generally considered as multipurpose breeds(milk,meat and wool),not specialised for a particular type of production,but known for their robustness and resistance to certain environmental conditions.Our objective was to identify genomic regions and genes that exhibit patterns of positive selection signatures,decipher their biological and productive functionality,and provide a"genomic"characterization of EAS adaptation and determine its production type.Results We identified positive selection signatures in EAS using several methods based on reduced local variation,linkage disequilibrium and site frequency spectrum(eROHi,iHS,nSL and CLR).Our analyses identified numerous genomic regions and genes(e.g.,desmosomal cadherin and desmoglein gene families)associated with environmental adaptation and economically important traits.Most candidate genes were related to meat/production and health/immune response traits,while some of the candidate genes discovered were important for domestication and evolutionary processes(e.g.,HOXa gene family and FSIP2).These results were also confirmed by GO and QTL enrichment analysis.Conclusions Our results contribute to a better understanding of the unique adaptive genetic architecture of EAS and define its productive type,ultimately providing a new opportunity for future breeding programmes.At the same time,the numerous genes identified will improve our understanding of ruminant(sheep)robustness and resistance in the harsh and specific Mediterranean environment.
基金supported by the Doctoral Fund of Jining No.1 People’s Hospital(2021-BS-002).
文摘Colorectal cancer(CRC)belongs to the class of significantly malignant tumors found in humans.Recently,dysregulated fatty acid metabolism(FAM)has been a topic of attention due to its modulation in cancer,specifically CRC.However,the regulatory FAM pathways in CRC require comprehensive elucidation.Methods:The clinical and gene expression data of 175 fatty acid metabolic genes(FAMGs)linked with colon adenocarcinoma(COAD)and normal cornerstone genes were gathered through The Cancer Genome Atlas(TCGA)-COAD corroborating with the Molecular Signature Database v7.2(MSigDB).Initially,crucial prognostic genes were selected by uni-and multi-variate Cox proportional regression analyses;then,depending upon these identified signature genes and clinical variables,a nomogram was generated.Lastly,to assess tumor immune characteristics,concomitant evaluation of tumor immune evasion/risk scoring were elucidated.Results:A 8-gene signature,including ACBD4,ACOX1,CD36,CPT2,ELOVL3,ELOVL6,ENO3,and SUCLG2,was generated,and depending upon this,CRC patients were categorized within high-risk(H-R)and low-risk(L-R)cohorts.Furthermore,risk and age-based nomograms indicated moderate discrimination and good calibration.The data confirmed that the 8-gene model efficiently predicted CRC patients’prognosis.Moreover,according to the conjoint analysis of tumor immune evasion and the risk scorings,the H-R cohort had an immunosuppressive tumor microenvironment,which caused a substandard prognosis.Conclusion:This investigation established a FAMGs-based prognostic model with substantially high predictive value,providing the possibility for improved individualized treatment for CRC individuals.
基金Supported by The European Union-Next Generation EU,through the National Recovery and Resilience Plan of the Republic of Bulgaria,No.BG-RRP-2.004-0008.
文摘In this editorial,we comment on an original article by Duan et al.Despite ad-vancements in the diagnosis and treatment of hepatocellular carcinoma(HCC),the identification of suitable prognostic factors remains challenging.In their paper,Duan et al identified long non-coding RNAs(LncRNAs)to quantify ge-nomic instability(GI)by combining LncRNA expression and somatic mutation profiles.They confirmed that the GI-derived LncRNA signature(GI-LncSig)could be an independent prognostic factor with the area under the curve of 0.773.Fur-thermore,the authors stated that GI-LncSig may have a better predictive perfor-mance than TP53 mutation status alone.However,studies exploring genetic markers for predicting the prognosis of HCC are crucial for identifying thera-peutic targets and enhancing diagnostic and treatment strategies to mitigate the global burden of liver cancer.
文摘A metropolitan city such as Los Angeles (LA) is an ideal study site with a very high population density, and it houses at least 3 treatment plants where sewage is treated preliminarily and then progressing to tertiary treatment before discharging into the LA River. We will gain a better understanding of the water quality in the LA River and the nitrate load in the watershed system by examining the influence of waste water treatment plants (WWTPs). The goal of this study is to pinpoint the exact source of nitrate in the LA River using the isotope signatures. We have selected sampling locations both upstream and downstream of the WWTP. This serves to monitor nitrate levels, aiding in the assessment of treatment plant effectiveness, pinpointing nitrate pollution sources, and ensuring compliance with environmental regulations. The research explores the isotopic composition of NO3 in relation to atmospheric nitrogen and Vienna Standard Mean Ocean Water, shedding light on the contributions from various sources such as manure, sewage, soil organic nitrogen, and nitrogen fertilizers. Specifically, there is a change in the δ15NAir value between the dry and wet seasons. The isotope values in the Tillman WWTP sample changed between dry and wet seasons. Notably, the presence of nitrate originating from manure and sewage is consistent across seasons, emphasizing the significant impact of anthropogenic and agricultural activities on water quality. This investigation contributes to the broader understanding of nitrogen cycling in urban water bodies, particularly in the context of wastewater effluent discharge. The findings hold implications for water quality management and highlight the need for targeted interventions to mitigate the impact of nitrogen-containing compounds on aquatic ecosystems. Overall, the study provides a valuable framework for future research and environmental stewardship efforts aimed at preserving the health and sustainability of urban water resources. This data informs decisions regarding additional treatment or mitigation actions to safeguard downstream water quality and ecosystem health.
基金supported by the Tomsk State University Competitiveness Improvement Program under Grant No.2.4.2.23 IG.
文摘Location awareness in wireless networks is essential for emergency services,navigation,gaming,and many other applications.This article presents a method for source localization based on measuring the amplitude-phase distribution of the field at the base station.The existing scatterers in the target area create unique scattered field interference at each source location.The unique field interference at each source location results in a unique field signature at the base station which is used for source localization.In the proposed method,the target area is divided into a grid with a step of less than half the wavelength.Each grid node is characterized by its field signature at the base station.Field signatures corresponding to all nodes are normalized and stored in the base station as fingerprints for source localization.The normalization of the field signatures avoids the need for time synchronization between the base station and the source.When a source transmits signals,the generated field signature at the base station is normalized and then correlated with the stored fingerprints.The maximum correlation value is given by the node to which the source is the closest.Numerical simulations and results of experiments on ultrasonic waves in the air show that the ultrasonic source is correctly localized using broadband field signatures with one base station and without time synchronization.The proposed method is potentially applicable for indoor localization and navigation of mobile robots.
基金Project supported by the General Project of Natural Science Foundation of Hunan Province(Grant Nos.2024JJ5273 and 2023JJ50328)the Scientific Research Project of Education Department of Hunan Province(Grant Nos.22A0049 and 22B0699)。
文摘This paper presents a novel approach to proxy blind signatures in the realm of quantum circuits,aiming to enhance security while safeguarding sensitive information.The main objective of this research is to introduce a quantum proxy blind signature(QPBS)protocol that utilizes quantum logical gates and quantum measurement techniques.The QPBS protocol is constructed by the initial phase,proximal blinding message phase,remote authorization and signature phase,remote validation,and de-blinding phase.This innovative design ensures a secure mechanism for signing documents without revealing the content to the proxy signer,providing practical security authentication in a quantum environment under the assumption that the CNOT gates are securely implemented.Unlike existing approaches,our proposed QPBS protocol eliminates the need for quantum entanglement preparation,thus simplifying the implementation process.To assess the effectiveness and robustness of the QPBS protocol,we conduct comprehensive simulation studies in both ideal and noisy quantum environments on the IBM quantum cloud platform.The results demonstrate the superior performance of the QPBS algorithm,highlighting its resilience against repudiation and forgeability,which are key security concerns in the realm of proxy blind signatures.Furthermore,we have established authentic security thresholds(82.102%)in the presence of real noise,thereby emphasizing the practicality of our proposed solution.
文摘Genomic profiling in postmortem brain from autistic individuals has consistently revealed convergent molecular changes.What drives these changes and how they relate to genetic susceptibility in this complex condition are not well understood.We performed deep single-nucleus RNA sequencing(snRNA-seq)to examine cell composition and transcriptomics,identifying dysregulation of cell type-specific gene regulatory networks(GRNs)in autism spectrum disorder(ASD).
基金supported by the Key-Area Research and Development Program of Guangdong Province(2021B0202020001)China Agriculture Research System of MOF and MARA(CARS-46)+2 种基金Central Public-interest Scientific Institution Basal Research Fund of CAFS(2020TD23,2020ZJTD-02)Project of Construction of Guangdong Aquatic Seed Industry Demonstration Base 2021Special Funds for Science Technology Innovation and Industrial Development of Shenzhen Dapeng New District(KJYF202101-02)。
文摘Largemouth bass(Micropterus salmoides) is an economically important fish species in North America, Europe, and China. Various genetic improvement programs and domestication processes have modified its genome sequence through selective pressure, leaving nucleotide signals that can be detected at the genomic level. In this study,we sequenced 149 largemouth bass fish, including protospecies(imported from the US) and improved breeds(four domestic breeding populations from China). We detected genomic regions harboring certain genes associated with improved traits, which may be useful molecular markers for practical domestication, breeding, and selection. Subsequent analyses of genetic diversity and population structure revealed that the improved breeds have undergone more rigorous genetic changes. Through selective signal analysis, we identified hundreds of putative selective sweep regions in each largemouth bass line. Interestingly, we predicted 103 putative candidate genes potentially subjected to selection,including several associated with growth(psst1 and grb10), early development(klf9, sp4, and sp8), and immune traits(pkn2, sept2, bcl6, and ripk2). These candidate genes represent potential genomic landmarks that could be used to improve important traits of biological and commercial interest. In summary, this study provides a genome-wide map of genetic variations and selection footprints in largemouth bass, which may benefit genetic studies and accelerate genetic improvement of this economically important fish.
基金supported by the Royal Netherlands Academy of Arts and Sciences(KNAW)(Grant No.PSA-SA-E-02)the Province of Zeeland,the Netherlands(Grant No.CoE-Buitendijks)。
文摘Understanding the sensitivity of tidal flats to environmental changes is challenging.Currently,most studies rely on process-based models to systematically explain the morphodynamic evolution of tidal flats.In this study,we proposed an alternative empirical approach to explore tidal flat dynamics using statistical indices based on long-term time series of daily surface elevation development.Surface elevation dynamic(SED)indices focus on the magnitude and period of surface elevation changes,while morphodynamic signature(MDS)indices relate sediment dynamics to environmental drivers.The statistical analyses were applied to an intervention site in the Netherlands to determine the effect of recently constructed groynes on the tidal flat.Using these analyses,we were able to(1)detect a reduction in the daily SED and(2)determine that the changes in the daily SED were predominantly caused by the reduction in wave impact between the groynes rather than the reduction in tidal currents.Overall,the presented results showed that the combination of novel statistical indices provides new insights into the trajectories of tidal flats,ecosystem functioning,and sensitivity to physical drivers(wind and tides).Finally,we suggested how the SED and MDS indices may help to explore the future trajectories and climate resilience of intertidal habitats.
基金Thisworkwas supported by the National Natural Science Foundation of China(32101541)the Key Research and Development Program of Hebei Province(21326804D).
文摘Hazelnut(Corylus spp.)is known as one of the four famous tree nuts in the world due to its pleasant taste and nutritional benefits.However,hazelnut promotion worldwide is increasingly challenged by global climate change,limiting its production to a few regions.Focusing on the eurytopic Section Phyllochlamys,we conducted whole-genome resequencing of 125 diverse accessions from five geo-ecological zones in Eurasia to elucidate the genomic basis of adaptation and improvement.Population structure inference outlined five distinct genetic lineages corresponding to climate conditions and breeding background,and highlighted the differentiation between European and Asian lineages.Demographic dynamics and ecological niche modeling revealed that Pleistocene climatic oscillations dominantly shaped the extant genetic patterns,and multiple environmental factors have contributed to the lineage divergence.Whole-genome scans identified 279,111,and 164 selective sweeps that underlie local adaptation in Corylus heterophylla,Corylus kweichowensis,and Corylus yunnanensis,respectively.Relevant positively selected genes were mainly involved in regulating signaling pathways,growth and development,and stress resistance.The improvement signatures of hybrid hazelnut were concentrated in 312 and 316 selected genes,when compared to C.heterophylla and Corylus avellana,respectively,including those that regulate protein polymerization,photosynthesis,and response to water deprivation.Among these loci,22 candidate genes were highly associated with the regulation of biological quality.Our study provides insights into evolutionary processes and the molecular basis of how sibling species adapt to contrasting environments,and offers valuable resources for future climate-resilient breeding.
文摘Verifiably encrypted signatures are employed when a signer wants to sign a message for a verifier but does not want the verifier to possess his signature on the message until some certain requirements of his are satisfied. This paper presented new verifiably encrypted signatures from bilinear pairings. The proposed signatures share the properties of simplicity and efficiency with existing verifiably encrypted signature schemes. To support the proposed scheme, it also exhibited security proofs that do not use random oracle assumption. For existential unforgeability, there exist tight security reductions from the proposed verifiably encrypted signature scheme to a strong but reasonable computational assumption.
文摘The framework of digital signature based on qualified certificates and X. 509 architecture is known to have many security risks. Moreover, the fraud prevention mechanism is fragile and does not provide strong guarantees that can be necessary for flow of legal documents. Mediated signatures have been proposed as a mechanism to effectively disable signature cards. In this paper we propose further mechanisms that can be applied on top of mediated RSA, compatible with the standard format, but providing security guarantees even in the case when RSA becomes broken or the keys are compromised. The solution is immune tokleptographic attacks as only deterministic algorithms are used on user＇s side.
基金supported by the National 973 Program(Grant No.2007CB209608)National 863 Program(Grant No.2007AA06Z218)
文摘Based on analyzing the limit of Ziolkowski＇s bubble oscillation formulation,a new model with various physical factors is established to simulate air gun signatures fo marine seismic exploration.The practical effects of physical factors,such as heat transfe across the bubble wall,air gun port throttling,vertical rise of the bubble,fluid viscosity,and the existence of the air gun body were all taken into account in the new model.Compared with Ziolkowski＇s model,the signatures simulated by the new model,with small peak amplitude and rapid decay of bubble oscillation,are more consistent with actual signatures The experiment analysis indicates：（1）gun port throttling controls the peak amplitude of ai gun pulse;（2）since the hydrostatic pressure decreases when the bubble rises,the bubble oscillation period changes;（3）heat transfer and fluid viscosity are the main factors tha explain the bubble oscillation damping.
基金The authors would like to thank the reviewers for their detailed reviews and constructive comments, which have helped improve the quality of this paper. This work is supported by National Natural Science Foundation of China （No： 61379144）, Foundation of Science and Technology on Information Assurance Laboratory （No： KJ-13-002） and the Graduate Innovation Fund of the National University of Defense Technology.
文摘Cloud storage is one of the main application of the cloud computing.With the data services in the cloud,users is able to outsource their data to the cloud,access and share their outsourced data from the cloud server anywhere and anytime.However,this new paradigm of data outsourcing services also introduces new security challenges,among which is how to ensure the integrity of the outsourced data.Although the cloud storage providers commit a reliable and secure environment to users,the integrity of data can still be damaged owing to the carelessness of humans and failures of hardwares/softwares or the attacks from external adversaries.Therefore,it is of great importance for users to audit the integrity of their data outsourced to the cloud.In this paper,we first design an auditing framework for cloud storage and proposed an algebraic signature based remote data possession checking protocol,which allows a third-party to auditing the integrity of the outsourced data on behalf of the users and supports unlimited number of verifications.Then we extends our auditing protocol to support data dynamic operations,including data update,data insertion and data deletion.The analysis and experiment results demonstrate that our proposed schemes are secure and efficient.
文摘Humans can sense, weigh and grasp different objects, deduce their physical properties at the same time, and exert appropriate forces – a challenging task for modern robots. Studying the mechanics of human grasping objects will play a supplementary role in visual-based robot object processing. These tools require large-scale tactile data sets with high spatial resolution. However, there is no large human-grasped tactile data set covering the whole hand, because dense coverage of the human hand with tactile sensors is challenging. Hence, the capability of observing and learning from successful daily humanobject interactions is the long-term goal of aiding the development of robots and prosthetics.
基金supported by the Key Technology R&D Program of China(2016C02054-2)the National Natural Science Foundation of China(31872976)。
文摘The aim of this study was to detect evidence for signatures of recent selection in the Jinhua pig genome.These results can be useful to better understand the regions under selection in Jinhua pigs and might shed some lights on groups of genes that control production traits.In the present study,we performed extended haplotype homozygosity(EHH)tests to identify significant core regions in 202 Jinhua pigs.A total of 26161 core regions spanning 636.42 Mb were identified,which occupied approximately 28%of the genome across all autosomes,and 1158 significant(P<0.01)core haplotypes were selected.Genes in these regions were related to several economically important traits,including meat quality,reproduction,immune responses and exterior traits.A panel of genes including ssc-mir-365-2,KDM8,RABEP2,GSG1L,RHEB,RPH3AL and a signal pathway of PI3K-Akt were detected with the most extreme P-values.The findings in our study could draw a comparatively genome-wide map of selection signature in the pig genome,and also help to detect functional candidate genes under positive selection for further genetic and breeding research in Jinhua and other pigs.
文摘The intricate “orchestered molecular conversation” between the host and gut microbiome is one of the most dynamic research areas in recent years. The rhythmic chemical cross talk in the form of bioactive metabolites and signalling molecules synthesized by gut microbiome plays a significant role for the modulation of human health in diversified ways. They are recognized as low molecular weight (LMW) molecules having versatile chemical attributes. They possess magnificent capability of interacting with surrounding environment and controlling the genes for various genetic, biochemical and physiological functions for maintaining the homeostasis that is now-a-days termed as “small molecules microbes originated (SMOM) homeostasis” in the host. These metabolic signatures have close structural and functional resemblance with small molecules synthesized by host eukaryotic cells and dietary components. Therefore, they may be considered as universalized metabolites contributing to the remarkable phenomenon of epigenetic regulation, cell to cell communication and stability of genome manifesting the overall growth and development of the host and known as “metabiotics”. The wide panorama of utilization of probiotics is continuously expanding and conferring the major health benefits through metabiotic components are gaining tremendous momentum therefore recognized as “hidden soldiers” of the body. Therefore firstly, we outline the need and types of metabiotic molecules and depicting their role in human health. Then, we summarize their preventive and therapeutic avenues in various diseases and finally, we propose the current technological interventions, bottlenecks and future perspectives in this field that are implied for accelerating their comprehensive understanding and utilization at industrial scale.
基金the National Natural Science Foundation of China(60073074)
文摘ISDTM, based on an augmented Allen's interval temporal logic (ITL) and first-order predicate calculus, is a formal temporal model for representing intrusion signatures. It is augmented with some real time extensions which enhance the expressivity. Intrusion scenarios usually are the set of events and system states, where- the temporal sequence is their basic relation. Intrusion signatures description, therefore , is to represent such temporal relations in a sense. While representing these signatures, ISDTM decomposes the intrusion process into the sequence of events according to their relevant intervals, and then specifies network states in these Intervals. The uncertain intrusion signatures as well as basic temporal modes of events, which consist of the parallel mode, the sequential mode and the hybrid mode, can be succinctly and naturally represented in ISDTM. Mode chart is the visualization of intrusion signatures in ISDTM, which makes the formulas more readable. The intrusion signatures descriptions in ISDTM have advantages of compact construct, concise syntax, scalability and easy implementation.
文摘This paper presents two systems for recognizing static signs (digits) from American Sign Language (ASL). These systems avoid the use color marks, or gloves, using instead, low-pass and high-pass filters in space and frequency domains, and color space transformations. First system used rotational signatures based on a correlation operator;minimum distance was used for the classification task. Second system computed the seven Hu invariants from binary images;these descriptors fed to a Multi-Layer Perceptron (MLP) in order to recognize the 9 different classes. First system achieves 100% of recognition rate with leaving-one-out validation and second experiment performs 96.7% of recognition rate with Hu moments and 100% using 36 normalized moments and k-fold cross validation.
基金the One Hundred Talents Program of Chinese Academy of Sciences(Y610061033)the Kunlun Talent Action Plan of Qinghai Province,China(E140WX42)+2 种基金the Science and Technology Plan Protect of Qinghai Province,China(2021-ZJ-T07)the Taishan Scholar Program of Shandong Province,China(tsqn201812116)the Two-Hundred Talents Plan of Yantai City of Shandong Province,China。
文摘Information on rare earth elements(REEs)in soils and plants of the Qinghai-Tibet Plateau is very limited.Therefore,in this study,we performed field sampling to explore the geochemical signatures and human health risk of REEs in soils and plants of the northeastern Qinghai-Tibet Plateau,China.A total of 127 soil samples and 127 plant samples were collected from the northeastern Qinghai-Tibet Plateau to acquire the geochemical signatures and related human health risks of REEs.The mean total concentrations of REEs in soils and plants of the study area reached 178.55 and 10.06 mg/kg,respectively.The light REEs in soils and plants accounted for 76%and 77%of the total REEs,respectively.REEs showed significantly homogenous distribution in soils but inhomogeneous distribution in plants of the study area.Characteristic parameters indicated that light REEs were enriched and fractionated significantly,while heavy REEs were moderately fractionated in soils and plants.REEs in soils and plants showed significantly negative Europium anomaly.Cerium showed slightly positive anomaly in plants and slight anomaly in soils.The normalized distribution patterns of REEs were generally similar in the analyzed soils and the corresponding plants of the study area.The average bio-concentration factor of REEs ranged from 0.0478(Scandium)to 0.0604(Europium),confirming a small accumulation of REEs by plants.Health risks caused by REEs in soils and plants were negligible,while risks for adults were lower than those for children.This study provides important information on REEs in soils and plants of the northeastern Qinghai-Tibet Plateau.
