The influence of Typhoon Kalmaegi on internal waves near the Dongsha Islands in the northeastern South China Sea was investigated using mooring observation data.We observed,for the first time,that the phenomenon of re...The influence of Typhoon Kalmaegi on internal waves near the Dongsha Islands in the northeastern South China Sea was investigated using mooring observation data.We observed,for the first time,that the phenomenon of regular variation characteristics of the 14-d spring-neap cycle of diurnal internal tides(ITs)can be regulated by typhoons.The diurnal ITs lost the regular variation characteristics of the 14-d spring-neap cycle during the typhoon period owing to the weakening of diurnal coherent ITs,represented by O_(1)and K_(1),and the strengthening of diurnal incoherent ITs.Results of quantitative analysis showed that during the pre-typhoon period,timeaveraged modal kinetic energy(sum of Modes 1–5)of near-inertial internal waves(NIWs)and diurnal and semidiurnal ITs were 0.62 kJ/m^(2),5.66 kJ/m^(2),and 1.48 kJ/m^(2),respectively.However,during the typhoon period,the modal kinetic energy of NIWs increased 5.11 times,mainly due to the increase in high-mode kinetic energy.At the same time,the modal kinetic energy of diurnal and semidiurnal ITs was reduced by 68.9%and 20%,respectively,mainly due to the decrease in low-mode kinetic energy.The significantly reduced diurnal ITs during the typhoon period could be due to:(1)strong nonlinear interaction between diurnal ITs and NIWs,and(2)a higher proportion of high-mode diurnal ITs during the typhoon period,leading to more energy dissipation.展开更多
Hydrogen exhibits the potential to treat Alzheimer's disease. Stereotactic injection has been previously used as an invasive method of administering active hydrogen, but this method has limitations in clinical pra...Hydrogen exhibits the potential to treat Alzheimer's disease. Stereotactic injection has been previously used as an invasive method of administering active hydrogen, but this method has limitations in clinical practice. In this study, triple transgenic(3×Tg) Alzheimer's disease mice were treated with hydrogen-rich water for 7 months. The results showed that hydrogen-rich water prevented synaptic loss and neuronal death, inhibited senile plaques, and reduced hyperphosphorylated tau and neurofibrillary tangles in 3×Tg Alzheimer's disease mice. In addition, hydrogen-rich water improved brain energy metabolism disorders and intestinal flora imbalances and reduced inflammatory reactions. These findings suggest that hydrogen-rich water is an effective hydrogen donor that can treat Alzheimer's disease. This study was approved by the Animal Ethics and Welfare Committee of Shenzhen University, China(approval No. AEWC-20140615-002) on June 15, 2014.展开更多
WRKY transcription factors are involved in defense responses caused by biotic stresses.Phylloxera(Daktulosphaira vitifoliae Fitch),a pest widespread in viticulture,elicits transcriptional reprogramming of plant defens...WRKY transcription factors are involved in defense responses caused by biotic stresses.Phylloxera(Daktulosphaira vitifoliae Fitch),a pest widespread in viticulture,elicits transcriptional reprogramming of plant defense-associated components,such as regulons related to WRKYs and salicylic acid(SA)signaling.In this study,we characterized WRKY46,a WRKY transcription factor responsible for phylloxera attack,and revealed the molecular mechanism for WRKY-mediated defense responses to phylloxera.qRT-PCR and GUS staining analyses revealed that WRKY46 is induced in response to phylloxera damage and mechanical wounding.VvWRKY46 is a nuclear-localized transcription factor that activates its downstream target VvCHIB by direct protein–DNA interaction.Regulons involved in the SA-mediated defense response were regulated during incompatible interactions between“1103 Paulsen”rootstock and phylloxera.In addition,WRKY46 exhibited a higher transcript abundance in“1103 Paulsen”than in“Crimson Seedless”,regardless of whether the plants were infected with phylloxera.Furthermore,the enhanced expression of VvWRKY46 significantly attenuated phylloxera attack and delayed nymph development of composite grape plants.In summary,we demonstrated that WRKY46 plays a role in the SA-mediated defense-regulatory network by directly binding to the downstream structural gene VvCHIB.The phylloxera-responsive gene WRKY46 was identified,which could improve the understanding of the basic mechanism of grapevine in response to phylloxera.展开更多
Peanut (Arachis hypogaea L.) is one of the most important oilseed crops that are cultivated worldwide. Peanut production is now greatly limited by drought stress, which is a major environmental challenge. The urgent t...Peanut (Arachis hypogaea L.) is one of the most important oilseed crops that are cultivated worldwide. Peanut production is now greatly limited by drought stress, which is a major environmental challenge. The urgent task for current peanut research is thus to study the underlying mechanisms of peanut drought tolerance, to identify genes that are closely associated with drought tolerance, and to create new germplasms/varieties with high drought tolerance. In this review, we summarize recent advances in the acclimation mechanisms to water deficiency and the genetic improvement of peanut for drought tolerance, and propose the perspectives for the future peanut research.展开更多
As one of the largest families of angiosperms,the Orchidaceae family is diverse.Dendrobium represents the second largest genus of the Orchidaceae.However,an assembled high-quality genome of species in this genus is la...As one of the largest families of angiosperms,the Orchidaceae family is diverse.Dendrobium represents the second largest genus of the Orchidaceae.However,an assembled high-quality genome of species in this genus is lacking.Here,we report a chromosome-scale reference genome of Dendrobium chrysotoxum,an important ornamental and medicinal orchid species.The assembled genome size of D.chrysotoxum was 1.37 Gb,with a contig N50 value of 1.54 Mb.Of the sequences,95.75%were anchored to 19 pseudochromosomes.There were 30,044 genes predicted in the D.chrysotoxum genome.Two whole-genome polyploidization events occurred in D.chrysotoxum.In terms of the second event,whole-genome duplication(WGD)was also found to have occurred in other Orchidaceae members,which diverged mainly via gene loss immediately after the WGD event occurred;the first duplication was found to have occurred in most monocots(tau event).We identified sugar transporter(SWEET)gene family expansion,which might be related to the abundant medicinal compounds and fleshy stems of D.chrysotoxum.MADS-box genes were identified in D.chrysotoxum,as well as members of TPS and Hsp90 gene families,which are associated with resistance,which may contribute to the adaptive evolution of orchids.We also investigated the interplay among carotenoid,ABA,and ethylene biosynthesis in D.chrysotoxum to elucidate the regulatory mechanisms of the short flowering period of orchids with yellow flowers.The reference D.chrysotoxum genome will provide important insights for further research on medicinal active ingredients and breeding and enhances the understanding of orchid evolution.展开更多
Based on the daily OISST V2 with 0.25ohorizontal resolutions, the present study looks into the variations of sea surface temperature (SST) extremes in the China Seas for different segments of the period 1982-2013. The...Based on the daily OISST V2 with 0.25ohorizontal resolutions, the present study looks into the variations of sea surface temperature (SST) extremes in the China Seas for different segments of the period 1982-2013. The two segments include the warming acceleration period from 1982 to 1997 and the hiatus period from 1998 to 2013 when the global mean surface temperature (GMST) did not significantly increase as expected, or even decreased in some areas.First, we construct the regional average time series over the entire China Seas (15°-45°N, 105°-130°E) for these SST extremes. During the hiatus period, the regionally averaged 10th, 1th and 0.1th percentile of SSTs in each year decreased significantly by 0.40℃, 0.56℃ and 0.58℃ per decade, respectively. The regionally averaged 90th, 99th and 99.9th percentile of SSTs in each year decreased slightly or insignificantly. Our work confirm that the regional hiatus was primarily reflected by wintertime cold extremes. Spatially, the trends of cold extremes in different intensity were nonuniformly distributed. Cold extremes in the near-shore areas were much more sensitive to the global warming hiatus. Hot extremes exhibited non-significant trend in the China Seas during the hiatus period. In short, the variations of the SST extremes in the two periods were non-uniform spatially and asymmetric seasonally. It is unexpected that the hot and cold extremes of each year during 1998-2013 were still higher than those extremes during 1982-1997. It is obvious that compared with the warming acceleration period, hot extremes were far more likely to occur in the recent hiatus as a result of a 0.3℃ warmer shift in the mean temperature distribution. Moreover, hot extremes in the China Seas will be sustained or amplified with the end of warming hiatus and the continuous anthropogenic warming.展开更多
Moisture contribution and transport pathways for Central Asia(CA)are quantitatively examined using the Lagrangian water cycle model based on reanalysis and observational data to explain the precipitation seasonality a...Moisture contribution and transport pathways for Central Asia(CA)are quantitatively examined using the Lagrangian water cycle model based on reanalysis and observational data to explain the precipitation seasonality and the moisture transport variation during 1979-2015.Westerly-related(northwesterly and westerly)transport explains 42%of CA precipitation and dominates in southwest CA,where precipitation is greatest in the cold season.Southeast CA,including part of Northwest China,experiences its maximum precipitation in the warm season and is solely dominated by southerly transport,which explains about 48%of CA precipitation.The remaining 10%of CA precipitation is explained by northerly transport,which steadily impacts north CA and causes a maximum in precipitation in the warm season.Most CA areas are exposed to seasonally varying moisture transport,except for southeast and north CA,which are impacted by southerly and northerly transport year-round.In general,the midlatitude westerlies-driven transport and the Indian monsoon-driven southerly-related transport explain most of the spatial differences in precipitation seasonality over CA.Moreover,the contribution ratio of local evaporation in CA to precipitation exhibits significant interdecadal variability and a meridionally oriented tripole of moisture transport anomalies.Since the early 2000s,CA has experienced a decade of anomalously low local moisture contribution,which seems jointly determined by the weakened moisture contribution from midlatitudes(the Atlantic,Europe,and CA itself)and the enhanced contribution from high latitudes(West Siberia and the Arctic)and tropical areas(South Asia and the Indian Ocean).展开更多
Euglena gracilis is a unicellular green eukaryotic microalga that features characteristics of both plants and animals.The photosynthetic function of its chloroplast is easily lost under stress resulting in bleached mu...Euglena gracilis is a unicellular green eukaryotic microalga that features characteristics of both plants and animals.The photosynthetic function of its chloroplast is easily lost under stress resulting in bleached mutants,while the physiological role of their residual plastid DNAs remains unclear.In this study,we obtained five bleached mutants by ofloxacin(Ofl)treatment,identified 12 residual plastid genes in five bleached mutants,and determined the mRNA levels in the wild type E.gracilis(WT)and one bleached mutant(OflB2)under dark and light stimulation conditions by quantitative reverse transcribed PCR(qRTPCR).Results show that the expression of all selected plastid genes in both WT and OflB2 mutant did not change significantly in darkness,while their responses to light stimulation were different.Under the light stimulation conditions,half of the genes did not change significantly,while most of the other genes were down-regulated in OflB2 mutant and up-regulated in WT.Therefore,the bleached mutant retains part of the plastid genome and the plastid relic is responsive to light.Our research will help to understand the functions of residual plastid DNA and evolution of chloroplasts.展开更多
Sea surface temperature(SST)measurements from 26 coastal hydrological stations of China during 1960–2015 were homogenized and analyzed in this study.The homogenous surface air temperature(SAT)series from meteorologic...Sea surface temperature(SST)measurements from 26 coastal hydrological stations of China during 1960–2015 were homogenized and analyzed in this study.The homogenous surface air temperature(SAT)series from meteorological stations which were highly correlated to SST series was used to construct the reference series.Monthly mean SST series were then derived and subjected to a statistical homogeneity test,called penalized maximal t test.Homogenized monthly mean SST series were obtained by adjusting all significant change points which were supported by historic metadata information.Results show that the majority of break points are caused by instrument change and station relocation,which accounts for about 61.3%and 24.2%of the total break points,respectively.The regionally averaged annual homogeneous SST series from the 26 stations shows a warming trend(0.19℃ per decade).This result is consistent with that based on the homogenized annual mean SAT at the same region(0.22℃ per decade),while the regionally averaged mean original SST series from the same stations shows a much weaker warming of 0.09℃ per decade for 1960–2015.This finding suggests that the effects of artificial change points on the result of trend analysis are remarkable,and the warming rate from original SST observations since 1960 may be underestimated.Thus a high quality homogenized observation is crucial for robust detection and assessment of regional climate change.Furthermore,the trends of the seasonal mean homogenized SST were also analyzed.This work confirmed that there was an asymmetric seasonal temperature trends in the Chinese coastal water in the past decades,with the largest warming rate occurring in winter.At last,the significant warming in winter and its relationships to the variability of three large-scale atmospheric modes were investigated.展开更多
Grain number and seed-setting rate are components of crop yield.Cytokinin influences grain yield.However,emerging studies suggest that high cytokinin signals often lead to reduced branching or seed-setting rate,leadin...Grain number and seed-setting rate are components of crop yield.Cytokinin influences grain yield.However,emerging studies suggest that high cytokinin signals often lead to reduced branching or seed-setting rate,leading to reduced grain yield,although the mechanisms remain unclear.In this study,we identified and characterized the rice(Oryza sativa L.)gene LONELY GUY-LIKE 8(LOGL8),based on analysis of the LOGL8-pm(promoter mutant of LOGL8)mutant,which harbors a T-DNA insertion in the promoter of this gene.The mutation in LOGL8-pm causes ectopic hyperexpression of LOGL8 in inflorescence organs,resulting in plants with smaller panicles and defective ovules lacking archesporial cells and integuments.Knockout of LOGL8 caused pollen abortion,leading to a reduced seed-setting rate.LOGL8 encodes a putative cytokinin-activating enzyme.Our results showed that LOGL8 directly catalyzes the biosynthesis of bioactive cytokinins.Therefore,we propose that the ectopic expression of LOGL8 disrupts cytokinin spatiotemporal distribution and causes inhibition of LONELY GUY(LOG),which affects panicle branching and female organ development.These findings reveal the important role of LOGL8 in male development,and highlight the delicate balance of local cytokinin levels during panicle branching and female organ development.展开更多
Targeted genome engineering refers to technologies that are used for site-specific genome modifications such as knockout, knockin and transcriptional regulation of genes of interest in organisms. Site-specific recombi...Targeted genome engineering refers to technologies that are used for site-specific genome modifications such as knockout, knockin and transcriptional regulation of genes of interest in organisms. Site-specific recombination system, zinc finger nucleases (ZFNs), transcriptional activator-like effector nucleases (TALENs) and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 nuclease (Cas9) (CRISPR/Cas9) technologies are the representatives of targeted genome engineering and have been widely used in crop basic and applied research. In this review, we introduce the basic information and action modes of these different genome engineering technologies, summarize the recent progresses of targeted genome engineering technologies and their applications in crop improvement, and propose perspectives for genome engineering-mediated modifications of crop plants in the future.展开更多
Centromere-specific histone H3 (CENH3) replaces the canonical histone H3 in nucleosomes of functional centromeres, and plays important roles in faithful chromosome segregation during cell division. CENH3 is also impor...Centromere-specific histone H3 (CENH3) replaces the canonical histone H3 in nucleosomes of functional centromeres, and plays important roles in faithful chromosome segregation during cell division. CENH3 is also important in the recognition of alien centromeres and determines the accommodation or elimination of alien chromosomes in interspecific or intergenic hybridization. In this study, a maize full length CENH3 with a yellow fluorescent protein (YFP) tag at C-terminus (ZmCENH3-YFP) and a synthetic hybrid wmCENH3 with the N-terminus from wheat CENH3 and the histone fold domain (HFD) from maize tagged with a red fluorescent protein (RFP) at the C-terminus (wmCENH3-RFP) were transformed to wheat by biolistics transformation. Transgenic wheat plants with both ZmCNEH3-YFP and wmCENH3-RFP genes were identified by PCR. The expression of ZmCENH3-YFP was not observed, while the expression of wmCENH3-RFP could be detected by RT-PCR, direct fluorescence microscopy, and immunostaining with anti-RFP antibody. The expressed wmCENH3-RFP was localized to nuclei as dotted patterns, indicating its targeting to wheat centromeres. Somatic hybridization was performed between wmCENH3-RFP transgenic wheat and transgenic maize that expressed a ZmCENH3-YFP gene to investigate chromosome behaviors in somatic hybrids. Cytological and FISH analyses of somatic hybrid cells showed the formation of micronuclei and lagging chromatin in both somatic hybridizations with or without the wmCENH3-RFP transgene, indicating that ectopically expressed wmCENH3 could not overcome chromosome elimination in wheat/maize somatic hybrids. Immunostaining of wmCENH3-RFP and ZmCENH3-YFP in early stage somatic hybrid cells indicated that both wmCENH3-RFP and ZmCENH3-YFP proteins were expressed, but their binding patterns changed from the commonly observed dotted patterns to diffused ones, suggesting that the inactivation of CENH3 might be a factor for chromosome elimination in wheat/maize somatic hybridization.展开更多
Background:Mangrove forests are a significant contributor to the global carbon cycle,and the accurate estimation of their gross primary productivity(GPP)is essential for understanding the carbon budget within blue car...Background:Mangrove forests are a significant contributor to the global carbon cycle,and the accurate estimation of their gross primary productivity(GPP)is essential for understanding the carbon budget within blue carbon ecosystems.Little attention has been given to the investigation of spatiotemporal patterns and ecological variations within mangrove ecosystems,as well as the quantitative analysis of the influence of geo-environmental factors on time-series estimations of mangrove GPP.Methods:This study explored the spatiotemporal dynamics of mangrove GPP from 2000 to 2020 in Gaoqiao Mangrove Reserve,China.A leaf area index(LAI)-based light-use efficiency(LUE)model was combined with Landsat data on Google Earth Engine(GEE)to reveal the variations in mangrove GPP using the Mann-Kendall(MK)test and Theil-Sen median trend.Moreover,the spatiotemporal patterns and ecological variations in mangrove ecosystems across regions were explored using four landscape indicators.Furthermore,the effects of six geo-environmental factors(species distribution,offshore distance,elevation,slope,planar curvature and profile curvature)on GPP were investigated using Geodetector and multi-scale geo-weighted regression(MGWR).Results:The results showed that the mangrove forest in the study area experienced an area loss from 766.26 ha in 2000 to 718.29 ha in 2020,mainly due to the conversion to farming,terrestrial forest and aquaculture zones.Landscape patterns indicated high levels of vegetation aggregation near water bodies and aquaculture zones,and low levels of aggregation but high species diversity and distribution density near building zone.The mean value of mangrove GPP continuously increased from 6.35 g C⋅m^(-2)⋅d^(-1) in 2000 to 8.33 g C⋅m^(-2)⋅d^(-1) in 2020,with 23.21%of areas showing a highly and significantly increasing trend(trend value>0.50).The Geodetector and MGWR analyses showed that species distribution,offshore distance and elevation contributed most to the GPP variations.Conclusions:These results provide guidelines for selecting GPP products,and the combination of Geodetector and MGWR based on multiple geo-environmental factors could quantitatively capture the mode,direction,pathway and intensity of the influencing factors on mangrove GPP variation.The findings provide a foundation for understanding the spatiotemporal dynamics of mangrove GPP at the landscape or regional scale.展开更多
Endosymbiosis with Gammaproteobacteria is fundamental for the success of bathymodioline mussels in deep-sea chemosynthesis-based ecosystems. However, the recent discovery of Campylobacteria on the gill surfaces of the...Endosymbiosis with Gammaproteobacteria is fundamental for the success of bathymodioline mussels in deep-sea chemosynthesis-based ecosystems. However, the recent discovery of Campylobacteria on the gill surfaces of these mussels suggests that these host-bacterial relationships may be more complex than previously thought. Using the cold-seep mussel(Gigantidas haimaensis) as a model, we explored this hostbacterial system by assembling the host transcriptome and genomes of its epibiotic Campylobacteria and endosymbiotic Gammaproteobacteria and quantifying their gene and protein expression levels. We found that the epibiont applies a sulfur oxidizing(SOX)multienzyme complex with the acquisition of sox B from Gammaproteobacteria for energy production and switched from a reductive tricarboxylic acid (rTCA) cycle to a Calvin-Benson-Bassham(CBB)cycle for carbon assimilation. The host provides metabolic intermediates, inorganic carbon, and thiosulfate to satisfy the materials and energy requirements of the epibiont, but whether the epibiont benefits the host is unclear. The endosymbiont adopts methane oxidation and the ribulose monophosphate pathway(Ru MP) for energy production, providing the major source of energy for itself and the host. The host obtains most of its nutrients, such as lysine, glutamine, valine,isoleucine, leucine, histidine, and folate, from the endosymbiont. In addition, host pattern recognition receptors, including toll-like receptors, peptidoglycan recognition proteins, and C-type lectins, may participate in bacterial infection, maintenance, and population regulation. Overall, this study provides insights into the complex host-bacterial relationships that have enabled mussels and bacteria to thrive in deep-sea chemosynthetic ecosystems.展开更多
Alzheimer’s disease is the most prevalent neurodegenerative disease affecting older adults.Primary features of Alzheimer’s disease include extra cellular aggregation of amyloid-βplaques and the accumulation of neur...Alzheimer’s disease is the most prevalent neurodegenerative disease affecting older adults.Primary features of Alzheimer’s disease include extra cellular aggregation of amyloid-βplaques and the accumulation of neurofibrillary tangles,fo rmed by tau protein,in the cells.While there are amyloid-β-ta rgeting therapies for the treatment of Alzheimer’s disease,these therapies are costly and exhibit potential negative side effects.Mounting evidence suggests significant involvement of tau protein in Alzheimer’s disease-related neurodegeneration.As an important microtubule-associated protein,tau plays an important role in maintaining the stability of neuronal microtubules and promoting axonal growth.In fact,clinical studies have shown that abnormal phosphorylation of tau protein occurs before accumulation of amyloid-βin the brain.Various therapeutic strategies targeting tau protein have begun to emerge,and are considered possible methods to prevent and treat Alzheimer’s disease.Specifically,abnormalities in post-translational modifications of the tau protein,including aberrant phosphorylation,ubiquitination,small ubiquitin-like modifier(SUMO)ylation,acetylation,and truncation,contribute to its microtubule dissociation,misfolding,and subcellular missorting.This causes mitochondrial damage,synaptic impairments,gliosis,and neuroinflammation,eventually leading to neurodegeneration and cognitive deficits.This review summarizes the recent findings on the underlying mechanisms of tau protein in the onset and progression of Alzheimer’s disease and discusses tau-targeted treatment of Alzheimer’s disease.展开更多
Background: The goat(Caprahircus) is one of the most important livestock animals. Goat milk fat is an important component in the nutritional quality of goat milk. Growing evidence points to the critical roles of micro...Background: The goat(Caprahircus) is one of the most important livestock animals. Goat milk fat is an important component in the nutritional quality of goat milk. Growing evidence points to the critical roles of microRNAs(miRNAs) in lipid metabolism.Results: Using a highly sensitive method of S-poly(T) plus for miRNAs detection, we analyze the expression patterns of 715 miRNAs in goat mammary gland tissues at different stages of lactation. We observed that miR-25 expression had an inverse relationship with milk production. Overexpression of miR-25 significantly repressed triacylglycerol synthesis and lipid droplet accumulation. To explore the regulatory mechanism of miR-25 in milk lipid metabolism,we analyzed its putative target genes with bioinformatics analysis followed by 3′-UTR assays. Peroxisome proliferative activated receptor gamma coactivator 1 beta(PGC-1 beta), a key regulator of lipogenics was identified as a direct target of miR-25 with three specific sites within its 3′-UTR. In addition, miR-25 mimics in goat mammary epithelial cells reduced the expressions of genes involved in lipid metabolism.Conclusions: Taken together, our results show miR-25 is potentially involved in lipid metabolism and we reveal the function of the miR-25/PGC-1 beta regulatory axis during lactation.展开更多
The anthocyanin content in apple skin determines its red coloration,as seen in a Fuji apple mutant.Comparative RNA-seq analysis was performed to determine differentially expressed genes at different fruit development ...The anthocyanin content in apple skin determines its red coloration,as seen in a Fuji apple mutant.Comparative RNA-seq analysis was performed to determine differentially expressed genes at different fruit development stages between the wild-type and the skin color mutant.A novel R2R3-MYB transcription factor,MdMYB90-like,was uncovered as the key regulatory gene for enhanced coloration in the mutant.The expression of MdMYB90-like was 21.3 times higher in the mutant.MdMYB90-like regulates anthocyanin biosynthesis directly through the activation of anthocyanin biosynthesis genes and indirectly through the activation of other transcription factors that activate anthocyanin biosynthesis.MdMYB90-like bound to the promoters of both structural genes(MdCHS and MdUFGT)and other transcription factor genes(MdMYB1 and MdbHLH3)in the yeast one-hybrid system,electrophoretic mobility shift assay,and dual-luciferase assay.Transgenic analysis showed that MdMYB90-like was localized in the nucleus,and its overexpression induced the expression of other anthocyanin-related genes,including MdCHS,MdCHI,MdANS,MdUFGT,MdbHLH3,and MdMYB1.The mutant had reduced levels of DNA methylation in two regions(−1183 to−988 and−2018 to−1778)of the MdMYB90-like gene promoter,which might explain the enhanced expression of the gene and the increased anthocyanin content in the mutant apple skin.展开更多
BACKGROUND Combined hepatocellular-cholangiocarcinoma(cHCC-CCA)is a form of rare primary liver cancer that combines intrahepatic cholangiocarcinoma(ICC)and hepatocellular carcinoma.AIM To investigate overall survival(...BACKGROUND Combined hepatocellular-cholangiocarcinoma(cHCC-CCA)is a form of rare primary liver cancer that combines intrahepatic cholangiocarcinoma(ICC)and hepatocellular carcinoma.AIM To investigate overall survival(OS)and recurrence-free survival(RFS)after radical resection in patients with cHCC-CCA,and the clinicopathological factors affecting prognosis in two center hospitals of China.METHODS We reviewed consecutive patients with cHCC-CCA who received radical resection between January 2005 and September 2021 at Peking Union Medical College and the 5th Medical Center of the PLA General Hospital retrospectively.Regular follow-up and clinicopathological characteristics were systematic collected for baseline and prognostic analysis.RESULTS Our study included 95 patients who received radical resection.The majority of these patients were male and 82.7%of these patients were infected with HBV.The mean tumor size was 4.5 cm,and approximately 40%of patients had more than one lesion.The median OS was 26.8(95%CI:18.5-43.0)mo,and the median RFS was 7.27(95%CI:5.83-10.3)mo.Independent predictors of OS were CA19-9≥37 U/mL(HR=8.68,P=0.002),Child-Pugh score>5(HR=5.52,P=0.027),tumor number>1(HR=30.85,P=0.002),tumor size and transarterial chemoembolization(TACE)after surgery(HR=0.2,P=0.005).CONCLUSION The overall postoperative survival of cHCC-CCA patients is poor,and most patients experience relapse within a short period of time after surgery.Preoperative tumor biomarker(CA19-9,alphafetoprotein)levels,tumor size,and Child-Pugh score can significantly affect OS.Adjuvant TACE after surgery prolongs RFS,suggesting that TACE is a possible option for postoperative adjuvant therapy in patients with cHCC-CCA.展开更多
Background: Tetracycline(Tet)-regulated expression system has become a widely applied tool to control gene activity. This study aimed to improve the Tet-on system with superior regulatory characteristics.Results: By c...Background: Tetracycline(Tet)-regulated expression system has become a widely applied tool to control gene activity. This study aimed to improve the Tet-on system with superior regulatory characteristics.Results: By comprehensively comparing factors of transactivators, Tet-responsive elements(TREs), orientations of induced expression cassette, and promoters controlling the transactivator, we developed an optimal Tet-on system with enhanced inducible efficiency and lower leakiness. With the system, we successfully performed effective inducible and reversible expression of micro RNA, and presented a more precise and easily reproducible fine-tuning for confirming the target of a mi RNA. Finally, the system was applied in CRISPR/Cas9-mediated knockout of nuclear factor of activated T cells-5(NFAT5), a protective transcription factor in cellular osmoregulation.Conclusions: This study established an improved Tet-on system for powerful and stringent gene regulation in functional genetic studies.展开更多
Upper turbulent mixing in the interior and surrounding areas of an anticyclonic eddy in the northern South China Sea(SCS)was estimated from underwater glider data(May 2015)in the present study,using the Gregg-HenyeyPo...Upper turbulent mixing in the interior and surrounding areas of an anticyclonic eddy in the northern South China Sea(SCS)was estimated from underwater glider data(May 2015)in the present study,using the Gregg-HenyeyPolzin parameterization and the Thorpe-scale method.The observations revealed a clear asymmetrical spatial pattern of turbulent mixing in the anticyclonic eddy area.Enhanced diffusivity(in the order of 10–3 m2/s)was found at the posterior edge of the anticyclonic mesoscale eddy;on the anterior side,diffusivity was one order of magnitude lower on average.This asymmetrical pattern was highly correlated with the eddy kinetic energy.Higher shear variance on the posterior side,which is conducive to the triggering of shear instability,may be the main mechanism for the elevated diffusivity.In addition,the generation and growth of sub-mesoscale motions that are fed by mesoscale eddies on their posterior side may also promote the occurrence of strong mixing in the studied region.The results of this study help improve our knowledge regarding turbulent mixing in the northern SCS.展开更多
基金The National Key Research and Development Program under contract No.2021YFC3101300the CAS Key Laboratory of Science and Technology on Operational Oceanography under contract No.OOST2021-07the fund supported by the Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai)under contract No.SML2021SP102.
文摘The influence of Typhoon Kalmaegi on internal waves near the Dongsha Islands in the northeastern South China Sea was investigated using mooring observation data.We observed,for the first time,that the phenomenon of regular variation characteristics of the 14-d spring-neap cycle of diurnal internal tides(ITs)can be regulated by typhoons.The diurnal ITs lost the regular variation characteristics of the 14-d spring-neap cycle during the typhoon period owing to the weakening of diurnal coherent ITs,represented by O_(1)and K_(1),and the strengthening of diurnal incoherent ITs.Results of quantitative analysis showed that during the pre-typhoon period,timeaveraged modal kinetic energy(sum of Modes 1–5)of near-inertial internal waves(NIWs)and diurnal and semidiurnal ITs were 0.62 kJ/m^(2),5.66 kJ/m^(2),and 1.48 kJ/m^(2),respectively.However,during the typhoon period,the modal kinetic energy of NIWs increased 5.11 times,mainly due to the increase in high-mode kinetic energy.At the same time,the modal kinetic energy of diurnal and semidiurnal ITs was reduced by 68.9%and 20%,respectively,mainly due to the decrease in low-mode kinetic energy.The significantly reduced diurnal ITs during the typhoon period could be due to:(1)strong nonlinear interaction between diurnal ITs and NIWs,and(2)a higher proportion of high-mode diurnal ITs during the typhoon period,leading to more energy dissipation.
基金supported by the National Natural Science Foundation of China,No.21771126(to XBD)the Shenzhen Bureau of Science,Technology and Information of China,No.JCYJ20180305124000597(to XBD)。
文摘Hydrogen exhibits the potential to treat Alzheimer's disease. Stereotactic injection has been previously used as an invasive method of administering active hydrogen, but this method has limitations in clinical practice. In this study, triple transgenic(3×Tg) Alzheimer's disease mice were treated with hydrogen-rich water for 7 months. The results showed that hydrogen-rich water prevented synaptic loss and neuronal death, inhibited senile plaques, and reduced hyperphosphorylated tau and neurofibrillary tangles in 3×Tg Alzheimer's disease mice. In addition, hydrogen-rich water improved brain energy metabolism disorders and intestinal flora imbalances and reduced inflammatory reactions. These findings suggest that hydrogen-rich water is an effective hydrogen donor that can treat Alzheimer's disease. This study was approved by the Animal Ethics and Welfare Committee of Shenzhen University, China(approval No. AEWC-20140615-002) on June 15, 2014.
基金supported by the National Natural Science Foundation of China in 2012(31201609).
文摘WRKY transcription factors are involved in defense responses caused by biotic stresses.Phylloxera(Daktulosphaira vitifoliae Fitch),a pest widespread in viticulture,elicits transcriptional reprogramming of plant defense-associated components,such as regulons related to WRKYs and salicylic acid(SA)signaling.In this study,we characterized WRKY46,a WRKY transcription factor responsible for phylloxera attack,and revealed the molecular mechanism for WRKY-mediated defense responses to phylloxera.qRT-PCR and GUS staining analyses revealed that WRKY46 is induced in response to phylloxera damage and mechanical wounding.VvWRKY46 is a nuclear-localized transcription factor that activates its downstream target VvCHIB by direct protein–DNA interaction.Regulons involved in the SA-mediated defense response were regulated during incompatible interactions between“1103 Paulsen”rootstock and phylloxera.In addition,WRKY46 exhibited a higher transcript abundance in“1103 Paulsen”than in“Crimson Seedless”,regardless of whether the plants were infected with phylloxera.Furthermore,the enhanced expression of VvWRKY46 significantly attenuated phylloxera attack and delayed nymph development of composite grape plants.In summary,we demonstrated that WRKY46 plays a role in the SA-mediated defense-regulatory network by directly binding to the downstream structural gene VvCHIB.The phylloxera-responsive gene WRKY46 was identified,which could improve the understanding of the basic mechanism of grapevine in response to phylloxera.
文摘Peanut (Arachis hypogaea L.) is one of the most important oilseed crops that are cultivated worldwide. Peanut production is now greatly limited by drought stress, which is a major environmental challenge. The urgent task for current peanut research is thus to study the underlying mechanisms of peanut drought tolerance, to identify genes that are closely associated with drought tolerance, and to create new germplasms/varieties with high drought tolerance. In this review, we summarize recent advances in the acclimation mechanisms to water deficiency and the genetic improvement of peanut for drought tolerance, and propose the perspectives for the future peanut research.
基金This project was supported by the Guangdong Innovation Research Team Fund(2014ZT05S078)National Natural Science Foundation of China(grants 31571252 and 31772322)+7 种基金Guangdong Special Support Program for Young Talents in Innovation Research of Science and Technology(2019TQ05N940)Shenzhen Peacock Grant(827/000189)Science and Technology Program of Guangdong Province,China(2019B121202006)Program of Forestry Administration of Guangdong Province(E036011002)Department for Wildlife and Forest Plant Protection of the National Forest and Grassland Administration(2019073010)National Key Research and Development Program of China(No.2018YFD1000400)Special Research Foundation of Hebei Agricultural University(YJ201848)Natural Science Foundation of Hebei Province(C2019204295).
文摘As one of the largest families of angiosperms,the Orchidaceae family is diverse.Dendrobium represents the second largest genus of the Orchidaceae.However,an assembled high-quality genome of species in this genus is lacking.Here,we report a chromosome-scale reference genome of Dendrobium chrysotoxum,an important ornamental and medicinal orchid species.The assembled genome size of D.chrysotoxum was 1.37 Gb,with a contig N50 value of 1.54 Mb.Of the sequences,95.75%were anchored to 19 pseudochromosomes.There were 30,044 genes predicted in the D.chrysotoxum genome.Two whole-genome polyploidization events occurred in D.chrysotoxum.In terms of the second event,whole-genome duplication(WGD)was also found to have occurred in other Orchidaceae members,which diverged mainly via gene loss immediately after the WGD event occurred;the first duplication was found to have occurred in most monocots(tau event).We identified sugar transporter(SWEET)gene family expansion,which might be related to the abundant medicinal compounds and fleshy stems of D.chrysotoxum.MADS-box genes were identified in D.chrysotoxum,as well as members of TPS and Hsp90 gene families,which are associated with resistance,which may contribute to the adaptive evolution of orchids.We also investigated the interplay among carotenoid,ABA,and ethylene biosynthesis in D.chrysotoxum to elucidate the regulatory mechanisms of the short flowering period of orchids with yellow flowers.The reference D.chrysotoxum genome will provide important insights for further research on medicinal active ingredients and breeding and enhances the understanding of orchid evolution.
基金Natural Science Foundation of China (41675046)Key-Area Research and Development Program of Guangdong Province (2020B1111020005)Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)(GML2019ZD0604)。
文摘Based on the daily OISST V2 with 0.25ohorizontal resolutions, the present study looks into the variations of sea surface temperature (SST) extremes in the China Seas for different segments of the period 1982-2013. The two segments include the warming acceleration period from 1982 to 1997 and the hiatus period from 1998 to 2013 when the global mean surface temperature (GMST) did not significantly increase as expected, or even decreased in some areas.First, we construct the regional average time series over the entire China Seas (15°-45°N, 105°-130°E) for these SST extremes. During the hiatus period, the regionally averaged 10th, 1th and 0.1th percentile of SSTs in each year decreased significantly by 0.40℃, 0.56℃ and 0.58℃ per decade, respectively. The regionally averaged 90th, 99th and 99.9th percentile of SSTs in each year decreased slightly or insignificantly. Our work confirm that the regional hiatus was primarily reflected by wintertime cold extremes. Spatially, the trends of cold extremes in different intensity were nonuniformly distributed. Cold extremes in the near-shore areas were much more sensitive to the global warming hiatus. Hot extremes exhibited non-significant trend in the China Seas during the hiatus period. In short, the variations of the SST extremes in the two periods were non-uniform spatially and asymmetric seasonally. It is unexpected that the hot and cold extremes of each year during 1998-2013 were still higher than those extremes during 1982-1997. It is obvious that compared with the warming acceleration period, hot extremes were far more likely to occur in the recent hiatus as a result of a 0.3℃ warmer shift in the mean temperature distribution. Moreover, hot extremes in the China Seas will be sustained or amplified with the end of warming hiatus and the continuous anthropogenic warming.
基金supported by the Strategic Priority Research Program of Chinese Academy of Sciences Sci-ences under Grant No.XDA20020201the National Natural Sci-ence Foundation of China(NSFC)under Grant Nos.41975099,U2006210,and 41475072.
文摘Moisture contribution and transport pathways for Central Asia(CA)are quantitatively examined using the Lagrangian water cycle model based on reanalysis and observational data to explain the precipitation seasonality and the moisture transport variation during 1979-2015.Westerly-related(northwesterly and westerly)transport explains 42%of CA precipitation and dominates in southwest CA,where precipitation is greatest in the cold season.Southeast CA,including part of Northwest China,experiences its maximum precipitation in the warm season and is solely dominated by southerly transport,which explains about 48%of CA precipitation.The remaining 10%of CA precipitation is explained by northerly transport,which steadily impacts north CA and causes a maximum in precipitation in the warm season.Most CA areas are exposed to seasonally varying moisture transport,except for southeast and north CA,which are impacted by southerly and northerly transport year-round.In general,the midlatitude westerlies-driven transport and the Indian monsoon-driven southerly-related transport explain most of the spatial differences in precipitation seasonality over CA.Moreover,the contribution ratio of local evaporation in CA to precipitation exhibits significant interdecadal variability and a meridionally oriented tripole of moisture transport anomalies.Since the early 2000s,CA has experienced a decade of anomalously low local moisture contribution,which seems jointly determined by the weakened moisture contribution from midlatitudes(the Atlantic,Europe,and CA itself)and the enhanced contribution from high latitudes(West Siberia and the Arctic)and tropical areas(South Asia and the Indian Ocean).
基金Supported by the National Natural Science Foundation of China(No.31670116)the Guangdong Innovation Research Team Fund(No.2014ZT05S078)the Shenzhen Grant Plan for Science&Technology(Nos.JCYJ20160308095910917,JCYJ20170818100339597,JCYJ 20130329114940668)。
文摘Euglena gracilis is a unicellular green eukaryotic microalga that features characteristics of both plants and animals.The photosynthetic function of its chloroplast is easily lost under stress resulting in bleached mutants,while the physiological role of their residual plastid DNAs remains unclear.In this study,we obtained five bleached mutants by ofloxacin(Ofl)treatment,identified 12 residual plastid genes in five bleached mutants,and determined the mRNA levels in the wild type E.gracilis(WT)and one bleached mutant(OflB2)under dark and light stimulation conditions by quantitative reverse transcribed PCR(qRTPCR).Results show that the expression of all selected plastid genes in both WT and OflB2 mutant did not change significantly in darkness,while their responses to light stimulation were different.Under the light stimulation conditions,half of the genes did not change significantly,while most of the other genes were down-regulated in OflB2 mutant and up-regulated in WT.Therefore,the bleached mutant retains part of the plastid genome and the plastid relic is responsive to light.Our research will help to understand the functions of residual plastid DNA and evolution of chloroplasts.
基金The Shenzhen Fundamental Research Program under contract No.JCYJ20200109110220482the Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou)under contract No.GML2019ZD0604the Shenzhen University Stability Support Program under contract No.20200810000724001。
文摘Sea surface temperature(SST)measurements from 26 coastal hydrological stations of China during 1960–2015 were homogenized and analyzed in this study.The homogenous surface air temperature(SAT)series from meteorological stations which were highly correlated to SST series was used to construct the reference series.Monthly mean SST series were then derived and subjected to a statistical homogeneity test,called penalized maximal t test.Homogenized monthly mean SST series were obtained by adjusting all significant change points which were supported by historic metadata information.Results show that the majority of break points are caused by instrument change and station relocation,which accounts for about 61.3%and 24.2%of the total break points,respectively.The regionally averaged annual homogeneous SST series from the 26 stations shows a warming trend(0.19℃ per decade).This result is consistent with that based on the homogenized annual mean SAT at the same region(0.22℃ per decade),while the regionally averaged mean original SST series from the same stations shows a much weaker warming of 0.09℃ per decade for 1960–2015.This finding suggests that the effects of artificial change points on the result of trend analysis are remarkable,and the warming rate from original SST observations since 1960 may be underestimated.Thus a high quality homogenized observation is crucial for robust detection and assessment of regional climate change.Furthermore,the trends of the seasonal mean homogenized SST were also analyzed.This work confirmed that there was an asymmetric seasonal temperature trends in the Chinese coastal water in the past decades,with the largest warming rate occurring in winter.At last,the significant warming in winter and its relationships to the variability of three large-scale atmospheric modes were investigated.
基金supported by the National Natural Science Foundation of China(31991222,32030080,31271301)the Guangdong Basic and Applied Basic Research Founation(2020A1515110207)the China Postdoctoral Science Foundation(2020M682726)。
文摘Grain number and seed-setting rate are components of crop yield.Cytokinin influences grain yield.However,emerging studies suggest that high cytokinin signals often lead to reduced branching or seed-setting rate,leading to reduced grain yield,although the mechanisms remain unclear.In this study,we identified and characterized the rice(Oryza sativa L.)gene LONELY GUY-LIKE 8(LOGL8),based on analysis of the LOGL8-pm(promoter mutant of LOGL8)mutant,which harbors a T-DNA insertion in the promoter of this gene.The mutation in LOGL8-pm causes ectopic hyperexpression of LOGL8 in inflorescence organs,resulting in plants with smaller panicles and defective ovules lacking archesporial cells and integuments.Knockout of LOGL8 caused pollen abortion,leading to a reduced seed-setting rate.LOGL8 encodes a putative cytokinin-activating enzyme.Our results showed that LOGL8 directly catalyzes the biosynthesis of bioactive cytokinins.Therefore,we propose that the ectopic expression of LOGL8 disrupts cytokinin spatiotemporal distribution and causes inhibition of LONELY GUY(LOG),which affects panicle branching and female organ development.These findings reveal the important role of LOGL8 in male development,and highlight the delicate balance of local cytokinin levels during panicle branching and female organ development.
文摘Targeted genome engineering refers to technologies that are used for site-specific genome modifications such as knockout, knockin and transcriptional regulation of genes of interest in organisms. Site-specific recombination system, zinc finger nucleases (ZFNs), transcriptional activator-like effector nucleases (TALENs) and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 nuclease (Cas9) (CRISPR/Cas9) technologies are the representatives of targeted genome engineering and have been widely used in crop basic and applied research. In this review, we introduce the basic information and action modes of these different genome engineering technologies, summarize the recent progresses of targeted genome engineering technologies and their applications in crop improvement, and propose perspectives for genome engineering-mediated modifications of crop plants in the future.
文摘Centromere-specific histone H3 (CENH3) replaces the canonical histone H3 in nucleosomes of functional centromeres, and plays important roles in faithful chromosome segregation during cell division. CENH3 is also important in the recognition of alien centromeres and determines the accommodation or elimination of alien chromosomes in interspecific or intergenic hybridization. In this study, a maize full length CENH3 with a yellow fluorescent protein (YFP) tag at C-terminus (ZmCENH3-YFP) and a synthetic hybrid wmCENH3 with the N-terminus from wheat CENH3 and the histone fold domain (HFD) from maize tagged with a red fluorescent protein (RFP) at the C-terminus (wmCENH3-RFP) were transformed to wheat by biolistics transformation. Transgenic wheat plants with both ZmCNEH3-YFP and wmCENH3-RFP genes were identified by PCR. The expression of ZmCENH3-YFP was not observed, while the expression of wmCENH3-RFP could be detected by RT-PCR, direct fluorescence microscopy, and immunostaining with anti-RFP antibody. The expressed wmCENH3-RFP was localized to nuclei as dotted patterns, indicating its targeting to wheat centromeres. Somatic hybridization was performed between wmCENH3-RFP transgenic wheat and transgenic maize that expressed a ZmCENH3-YFP gene to investigate chromosome behaviors in somatic hybrids. Cytological and FISH analyses of somatic hybrid cells showed the formation of micronuclei and lagging chromatin in both somatic hybridizations with or without the wmCENH3-RFP transgene, indicating that ectopically expressed wmCENH3 could not overcome chromosome elimination in wheat/maize somatic hybrids. Immunostaining of wmCENH3-RFP and ZmCENH3-YFP in early stage somatic hybrid cells indicated that both wmCENH3-RFP and ZmCENH3-YFP proteins were expressed, but their binding patterns changed from the commonly observed dotted patterns to diffused ones, suggesting that the inactivation of CENH3 might be a factor for chromosome elimination in wheat/maize somatic hybridization.
基金This work was supported by Guangdong Basic and Applied Basic Research Foundation(2019A1515010741 and 2021A1515110910)Guangdong Regional Joint Fund-Youth Fund(2020A1515111142)Shenzhen Science and Technology Program(JCYJ20210324093210029).
文摘Background:Mangrove forests are a significant contributor to the global carbon cycle,and the accurate estimation of their gross primary productivity(GPP)is essential for understanding the carbon budget within blue carbon ecosystems.Little attention has been given to the investigation of spatiotemporal patterns and ecological variations within mangrove ecosystems,as well as the quantitative analysis of the influence of geo-environmental factors on time-series estimations of mangrove GPP.Methods:This study explored the spatiotemporal dynamics of mangrove GPP from 2000 to 2020 in Gaoqiao Mangrove Reserve,China.A leaf area index(LAI)-based light-use efficiency(LUE)model was combined with Landsat data on Google Earth Engine(GEE)to reveal the variations in mangrove GPP using the Mann-Kendall(MK)test and Theil-Sen median trend.Moreover,the spatiotemporal patterns and ecological variations in mangrove ecosystems across regions were explored using four landscape indicators.Furthermore,the effects of six geo-environmental factors(species distribution,offshore distance,elevation,slope,planar curvature and profile curvature)on GPP were investigated using Geodetector and multi-scale geo-weighted regression(MGWR).Results:The results showed that the mangrove forest in the study area experienced an area loss from 766.26 ha in 2000 to 718.29 ha in 2020,mainly due to the conversion to farming,terrestrial forest and aquaculture zones.Landscape patterns indicated high levels of vegetation aggregation near water bodies and aquaculture zones,and low levels of aggregation but high species diversity and distribution density near building zone.The mean value of mangrove GPP continuously increased from 6.35 g C⋅m^(-2)⋅d^(-1) in 2000 to 8.33 g C⋅m^(-2)⋅d^(-1) in 2020,with 23.21%of areas showing a highly and significantly increasing trend(trend value>0.50).The Geodetector and MGWR analyses showed that species distribution,offshore distance and elevation contributed most to the GPP variations.Conclusions:These results provide guidelines for selecting GPP products,and the combination of Geodetector and MGWR based on multiple geo-environmental factors could quantitatively capture the mode,direction,pathway and intensity of the influencing factors on mangrove GPP variation.The findings provide a foundation for understanding the spatiotemporal dynamics of mangrove GPP at the landscape or regional scale.
基金supported by the Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou)(GML2019ZD0409,SMSEGL20SC02)Research Grants Council of Hong Kong(12101021)Guangdong Natural Science Foundation(2020A1515011117)。
文摘Endosymbiosis with Gammaproteobacteria is fundamental for the success of bathymodioline mussels in deep-sea chemosynthesis-based ecosystems. However, the recent discovery of Campylobacteria on the gill surfaces of these mussels suggests that these host-bacterial relationships may be more complex than previously thought. Using the cold-seep mussel(Gigantidas haimaensis) as a model, we explored this hostbacterial system by assembling the host transcriptome and genomes of its epibiotic Campylobacteria and endosymbiotic Gammaproteobacteria and quantifying their gene and protein expression levels. We found that the epibiont applies a sulfur oxidizing(SOX)multienzyme complex with the acquisition of sox B from Gammaproteobacteria for energy production and switched from a reductive tricarboxylic acid (rTCA) cycle to a Calvin-Benson-Bassham(CBB)cycle for carbon assimilation. The host provides metabolic intermediates, inorganic carbon, and thiosulfate to satisfy the materials and energy requirements of the epibiont, but whether the epibiont benefits the host is unclear. The endosymbiont adopts methane oxidation and the ribulose monophosphate pathway(Ru MP) for energy production, providing the major source of energy for itself and the host. The host obtains most of its nutrients, such as lysine, glutamine, valine,isoleucine, leucine, histidine, and folate, from the endosymbiont. In addition, host pattern recognition receptors, including toll-like receptors, peptidoglycan recognition proteins, and C-type lectins, may participate in bacterial infection, maintenance, and population regulation. Overall, this study provides insights into the complex host-bacterial relationships that have enabled mussels and bacteria to thrive in deep-sea chemosynthetic ecosystems.
基金supported by the National Natural Science Foundation of China,No.82101493(to JY)。
文摘Alzheimer’s disease is the most prevalent neurodegenerative disease affecting older adults.Primary features of Alzheimer’s disease include extra cellular aggregation of amyloid-βplaques and the accumulation of neurofibrillary tangles,fo rmed by tau protein,in the cells.While there are amyloid-β-ta rgeting therapies for the treatment of Alzheimer’s disease,these therapies are costly and exhibit potential negative side effects.Mounting evidence suggests significant involvement of tau protein in Alzheimer’s disease-related neurodegeneration.As an important microtubule-associated protein,tau plays an important role in maintaining the stability of neuronal microtubules and promoting axonal growth.In fact,clinical studies have shown that abnormal phosphorylation of tau protein occurs before accumulation of amyloid-βin the brain.Various therapeutic strategies targeting tau protein have begun to emerge,and are considered possible methods to prevent and treat Alzheimer’s disease.Specifically,abnormalities in post-translational modifications of the tau protein,including aberrant phosphorylation,ubiquitination,small ubiquitin-like modifier(SUMO)ylation,acetylation,and truncation,contribute to its microtubule dissociation,misfolding,and subcellular missorting.This causes mitochondrial damage,synaptic impairments,gliosis,and neuroinflammation,eventually leading to neurodegeneration and cognitive deficits.This review summarizes the recent findings on the underlying mechanisms of tau protein in the onset and progression of Alzheimer’s disease and discusses tau-targeted treatment of Alzheimer’s disease.
基金supported by the Transgenic Project from the Ministry of Agriculture [2014ZX08009-051B to JL]the National Natural Science Foundation of China [81370151 and 81570046 to DG,31701185 to HQ and81700054 to YZ]+3 种基金the Shenzhen Municipal Basic Research Program[JCYJ20150729104027220 to DG and JCYJ20160520174217859 to HQ]Shenzhen University Interdisciplinary Innovation Team Project [000003 to DG]Natural Science Foundation of Guangdong Province [2017A030310450to HQ]Research Project of Shenzhen Technology University [201731 to HQ]
文摘Background: The goat(Caprahircus) is one of the most important livestock animals. Goat milk fat is an important component in the nutritional quality of goat milk. Growing evidence points to the critical roles of microRNAs(miRNAs) in lipid metabolism.Results: Using a highly sensitive method of S-poly(T) plus for miRNAs detection, we analyze the expression patterns of 715 miRNAs in goat mammary gland tissues at different stages of lactation. We observed that miR-25 expression had an inverse relationship with milk production. Overexpression of miR-25 significantly repressed triacylglycerol synthesis and lipid droplet accumulation. To explore the regulatory mechanism of miR-25 in milk lipid metabolism,we analyzed its putative target genes with bioinformatics analysis followed by 3′-UTR assays. Peroxisome proliferative activated receptor gamma coactivator 1 beta(PGC-1 beta), a key regulator of lipogenics was identified as a direct target of miR-25 with three specific sites within its 3′-UTR. In addition, miR-25 mimics in goat mammary epithelial cells reduced the expressions of genes involved in lipid metabolism.Conclusions: Taken together, our results show miR-25 is potentially involved in lipid metabolism and we reveal the function of the miR-25/PGC-1 beta regulatory axis during lactation.
基金This work was supported by National Key R&D Program of China(2019YFD1000100)the Fundamental Research Funds for the Central Universities(KYZZ2021002)+3 种基金the Priority Academic Program Development of Jiangsu Higher Education Institutions to S.C.Q.the National Natural Science Foundation of China(31671766)the Guangdong Innovation Research Team Fund(No.2014ZT05S078)the Shenzhen Commission of Science and Technology Innovation Project(JCYJ20190808143207457,JCYJ20180305124101630,and JCYJ20170818094958663)to W.Y.
文摘The anthocyanin content in apple skin determines its red coloration,as seen in a Fuji apple mutant.Comparative RNA-seq analysis was performed to determine differentially expressed genes at different fruit development stages between the wild-type and the skin color mutant.A novel R2R3-MYB transcription factor,MdMYB90-like,was uncovered as the key regulatory gene for enhanced coloration in the mutant.The expression of MdMYB90-like was 21.3 times higher in the mutant.MdMYB90-like regulates anthocyanin biosynthesis directly through the activation of anthocyanin biosynthesis genes and indirectly through the activation of other transcription factors that activate anthocyanin biosynthesis.MdMYB90-like bound to the promoters of both structural genes(MdCHS and MdUFGT)and other transcription factor genes(MdMYB1 and MdbHLH3)in the yeast one-hybrid system,electrophoretic mobility shift assay,and dual-luciferase assay.Transgenic analysis showed that MdMYB90-like was localized in the nucleus,and its overexpression induced the expression of other anthocyanin-related genes,including MdCHS,MdCHI,MdANS,MdUFGT,MdbHLH3,and MdMYB1.The mutant had reduced levels of DNA methylation in two regions(−1183 to−988 and−2018 to−1778)of the MdMYB90-like gene promoter,which might explain the enhanced expression of the gene and the increased anthocyanin content in the mutant apple skin.
基金the CAMS Innovation Fund for Medical Sciences(CIFMS),No.2021-I2M-1-061 and No.2021-1-I2M-003CSCO-hengrui Cancer Research Fund,No.Y-HR2019-0239CSCO-MSD Cancer Research Fund,No.YMSDZD2021-0213.
文摘BACKGROUND Combined hepatocellular-cholangiocarcinoma(cHCC-CCA)is a form of rare primary liver cancer that combines intrahepatic cholangiocarcinoma(ICC)and hepatocellular carcinoma.AIM To investigate overall survival(OS)and recurrence-free survival(RFS)after radical resection in patients with cHCC-CCA,and the clinicopathological factors affecting prognosis in two center hospitals of China.METHODS We reviewed consecutive patients with cHCC-CCA who received radical resection between January 2005 and September 2021 at Peking Union Medical College and the 5th Medical Center of the PLA General Hospital retrospectively.Regular follow-up and clinicopathological characteristics were systematic collected for baseline and prognostic analysis.RESULTS Our study included 95 patients who received radical resection.The majority of these patients were male and 82.7%of these patients were infected with HBV.The mean tumor size was 4.5 cm,and approximately 40%of patients had more than one lesion.The median OS was 26.8(95%CI:18.5-43.0)mo,and the median RFS was 7.27(95%CI:5.83-10.3)mo.Independent predictors of OS were CA19-9≥37 U/mL(HR=8.68,P=0.002),Child-Pugh score>5(HR=5.52,P=0.027),tumor number>1(HR=30.85,P=0.002),tumor size and transarterial chemoembolization(TACE)after surgery(HR=0.2,P=0.005).CONCLUSION The overall postoperative survival of cHCC-CCA patients is poor,and most patients experience relapse within a short period of time after surgery.Preoperative tumor biomarker(CA19-9,alphafetoprotein)levels,tumor size,and Child-Pugh score can significantly affect OS.Adjuvant TACE after surgery prolongs RFS,suggesting that TACE is a possible option for postoperative adjuvant therapy in patients with cHCC-CCA.
基金partly supported by National Natural Science Foundation of China(31571199,81570046,91739109,81870045,and 81700054)the Shenzhen Municipal Basic Research Program JCYJ20150729104027220 and JCYJ20170818144127727Interdisciplinary Innovation Team Project of Shenzhen University
文摘Background: Tetracycline(Tet)-regulated expression system has become a widely applied tool to control gene activity. This study aimed to improve the Tet-on system with superior regulatory characteristics.Results: By comprehensively comparing factors of transactivators, Tet-responsive elements(TREs), orientations of induced expression cassette, and promoters controlling the transactivator, we developed an optimal Tet-on system with enhanced inducible efficiency and lower leakiness. With the system, we successfully performed effective inducible and reversible expression of micro RNA, and presented a more precise and easily reproducible fine-tuning for confirming the target of a mi RNA. Finally, the system was applied in CRISPR/Cas9-mediated knockout of nuclear factor of activated T cells-5(NFAT5), a protective transcription factor in cellular osmoregulation.Conclusions: This study established an improved Tet-on system for powerful and stringent gene regulation in functional genetic studies.
基金The National Key R&D Plan of China under contract Nos 2017YFC0305904,2017YFC0305804 and 2016YFC1401404the National Natural Science Foundation of China under contract Nos 41876023,41630970,41806037,41706137 and 41806033+4 种基金the Guangdong Science and Technology Project under contract Nos 2019A1515111044,2018A0303130047 and 2017A030310332the Guangzhou Science and Technology Project under contract No.201707020037the Natural Science Foundation of Shenzhen University under contract No.2019078the Dedicated Fund for Promoting High-quality Economic Development in Guangdong Province(Marine Economic Development Project)under contract No.GDOE2019A03the Independent Research Project Program of State Key Laboratory of Tropical Oceanography under contract Nos LTOZZ1902 and LTO1909。
文摘Upper turbulent mixing in the interior and surrounding areas of an anticyclonic eddy in the northern South China Sea(SCS)was estimated from underwater glider data(May 2015)in the present study,using the Gregg-HenyeyPolzin parameterization and the Thorpe-scale method.The observations revealed a clear asymmetrical spatial pattern of turbulent mixing in the anticyclonic eddy area.Enhanced diffusivity(in the order of 10–3 m2/s)was found at the posterior edge of the anticyclonic mesoscale eddy;on the anterior side,diffusivity was one order of magnitude lower on average.This asymmetrical pattern was highly correlated with the eddy kinetic energy.Higher shear variance on the posterior side,which is conducive to the triggering of shear instability,may be the main mechanism for the elevated diffusivity.In addition,the generation and growth of sub-mesoscale motions that are fed by mesoscale eddies on their posterior side may also promote the occurrence of strong mixing in the studied region.The results of this study help improve our knowledge regarding turbulent mixing in the northern SCS.
