Climate change poses a serious long-term threat to biodiversity.To effectively reduce biodiversity loss,conservationists need to have a thorough understanding of the preferred habitats of species and the variables tha...Climate change poses a serious long-term threat to biodiversity.To effectively reduce biodiversity loss,conservationists need to have a thorough understanding of the preferred habitats of species and the variables that affect their distribution.Therefore,predicting the impact of climate change on speciesappropriate habitats may help mitigate the potential threats to biodiversity distribution.Xerophyta,a monocotyledonous genus of the family Velloziaceae is native to mainland Africa,Madagascar,and the Arabian Peninsula.The key drivers of Xerophyta habitat distribution and preference are unknown.Using 308 species occurrence data and eight environmental variables,the MaxEnt model was used to determine the potential distribution of six Xerophyta species in Africa under past,current and future climate change scenarios.The results showed that the models had a good predictive ability(Area Under the Curve and True Skill Statistics values for all SDMs were more than 0.902),indicating high accuracy in forecasting the potential geographic distribution of Xerophyta species.The main bioclimatic variables that impacted potential distributions of most Xerophyta species were mean temperature of the driest quarter(Bio9)and precipitation of the warmest quarter(Bio18).According to our models,tropical Africa has zones of moderate and high suitability for Xerophyta taxa,which is consistent with the majority of documented species localities.The habitat suitability of the existing range of the Xerophyta species varied based on the climate scenario,with most species experiencing a range loss greater than the range gain regardless of the climate scenario.The projected spatiotemporal patterns of Xerophyta species help guide recommendations for conservation efforts.展开更多
Histone H3 lysine 27 trimethylation(H3K27me3) is a histone modification associated with transcriptional repression. However, insights into the genome-wide pattern of H3K27me3 in grapevines are limited. Here, anti-H3K2...Histone H3 lysine 27 trimethylation(H3K27me3) is a histone modification associated with transcriptional repression. However, insights into the genome-wide pattern of H3K27me3 in grapevines are limited. Here, anti-H3K27 chromatin immunoprecipitation(ChIP), high-throughput sequencing, and transcriptome analysis were performed using leaves of Vitis amurensis. The leaves were treated at 4°C for 2 h and 24 h and used to investigate changes in H3K27me3 under chilling treatment. The results show that H3K27me3 is well-distributed both in gene regions(-50%) and in the intergenic region(-50%) in the grapevine genome(Vitis vinifera ‘Pinot Noir PN40024'). H3K27me3 was found to be localized in8 368 annotated gene regions in all detected samples(leaves at normal temperature and under chilling treatments) and mainly enriched in gene bodies with the adjacent promoter and downstream areas. The short-term chilling treatments(4°C for 2 h) induced 2 793 gains and 305losses in H3K27me3 modification. Subsequently, 97.3% of the alterations were restored to original levels after 24 h treatment. The ChIP-qPCR for five differential peaks showed similar results to the data for ChIP-seq, indicating that the chilling-induced H3K27me3 modification is reliable.Integrative analysis of transcriptome and ChIP-seq results showed that the expression of H3K27me3 target genes was significantly lower than those of non-target genes, indicating transcriptional repression of H3K27me3 in grapevine leaves. Furthermore, histone methylation alterations were detected in 82 genes and were related to either repression or activation of their expression during chilling stress. The findings provide the genome-wide H3K27me3 patterns in grapevines and shed light on uncovering its regulation in chilling stress responses.展开更多
Field surveys and empirical integrated methods are commonly used in the ecological research to understand the altitudinal pattern of plant diversity of mountains.However,few studies have compared the differences betwe...Field surveys and empirical integrated methods are commonly used in the ecological research to understand the altitudinal pattern of plant diversity of mountains.However,few studies have compared the differences between the two methods on the same scale.Here,we addressed and compared the altitudinal patterns of species richness(SR),phylogenetic diversity(PD),the standardized effect size of phylogenetic diversity(PDses)and mean phylogenetic distance(MPDses)of about 580 angiosperms growing on Mount Kenya from two independent datasets:one is based on our several times field surveys in this mountain and another one is based on empirical data integrated from literatures.We found that the altitudinal diversity patterns of field surveys dataset were consistent with the empirical integrated dataset.Both SR and PD showed hump-shaped patterns along the altitude,and both PDses and MPDses showed monotonically decreasing patterns along the altitude.The ratio of diversity between field surveys dataset and empirical integrated dataset were gradually increase along the altitude.Our research provides new insight for understanding the altitudinal diversity patterns of plants of a tropical mountain.展开更多
China covers a vast territory harbouring a large number of aquatic plants.Although there are many studies on the β-diversity of total,herbaceous or woody plants in China and elsewhere,few studies have focused on aqua...China covers a vast territory harbouring a large number of aquatic plants.Although there are many studies on the β-diversity of total,herbaceous or woody plants in China and elsewhere,few studies have focused on aquatic plants.Here,we analyse a comprehensive data set of 889 aquatic angiosperm species in China,and explore the geographic patterns and climatic correlates of total taxonomic and phylogeneticβ-diversity as well as their turnover and nestedness components.Our results show that geographic patterns of taxonomic and phylogenetic β-diversity are highly congruent for aquatic angiosperms,and taxonomic β-diversity is consistently higher than phylogenetic β-diversity.The ratio between the nestedness component and total β-diversity is high in northwestern China and low in southeastern China.The geographic patterns of taxonomic and phylogenetic β-diversity of aquatic angiosperms in China are obviously affected by geographic and climatic distances,respectively.In conclusion,the geographic patterns of taxonomic and phylogenetic β-diversity of aquatic angiosperms are consistent across China.Climatic and geographic distances jointly affect the geographic patterns of β-diversity of aquatic angiosperms.Overall,our work provides insight into understanding the large-scale patterns of aquatic angiosperm β-diversity,and is a critical addition to previous studies on the macroecological patterns of terrestrial organisms.展开更多
研究青藏高原地区植被的时空分布特征及其与地表温度和降水之间的关系,对区域乃至全球的生态环境均有重要意义。使用MOD13Q1归一化植被指数(NDVI)产品数据,分析了青藏高原地区2000—2019年NDVI的时空变化特征,并通过MOD11A2地表温度数据...研究青藏高原地区植被的时空分布特征及其与地表温度和降水之间的关系,对区域乃至全球的生态环境均有重要意义。使用MOD13Q1归一化植被指数(NDVI)产品数据,分析了青藏高原地区2000—2019年NDVI的时空变化特征,并通过MOD11A2地表温度数据和TRMM卫星降水数据探究植被变化与地表温度和降水之间的关系。研究表明,青藏高原地区近20 a NDVI空间格局表现为西北低、东南高,北部干旱地区NDVI相对较低,普遍低于0.20,东南地区林地较多,整体NDVI偏高;2000—2019年青藏高原地区植被整体在“变绿”,NDVI处于0.0012 a^(-1)增长的趋势,北部低植被覆盖区显著改善,南部较高、高植被覆盖区变化不显著。研究区植被与地表温度和降水存在一定的相关性,在西藏的中部以及青海的中南部地区,NDVI值与降水呈现正相关性,偏相关系数较高;在西藏的西北部、青海的南部等地,NDVI值与地表温度呈正相关关系;在西藏中部等地,NDVI与地表温度呈负相关关系。展开更多
基金supported by grants from the International Partnership Program of Chinese Academy of Sciences (151853KYSB20190027)Sino-Africa Joint Research Center, CAS (SAJC202101)The ANSO Scholarship for Young Talents, PhD Fellowship Program University of Chinese Academy of Sciences, China
文摘Climate change poses a serious long-term threat to biodiversity.To effectively reduce biodiversity loss,conservationists need to have a thorough understanding of the preferred habitats of species and the variables that affect their distribution.Therefore,predicting the impact of climate change on speciesappropriate habitats may help mitigate the potential threats to biodiversity distribution.Xerophyta,a monocotyledonous genus of the family Velloziaceae is native to mainland Africa,Madagascar,and the Arabian Peninsula.The key drivers of Xerophyta habitat distribution and preference are unknown.Using 308 species occurrence data and eight environmental variables,the MaxEnt model was used to determine the potential distribution of six Xerophyta species in Africa under past,current and future climate change scenarios.The results showed that the models had a good predictive ability(Area Under the Curve and True Skill Statistics values for all SDMs were more than 0.902),indicating high accuracy in forecasting the potential geographic distribution of Xerophyta species.The main bioclimatic variables that impacted potential distributions of most Xerophyta species were mean temperature of the driest quarter(Bio9)and precipitation of the warmest quarter(Bio18).According to our models,tropical Africa has zones of moderate and high suitability for Xerophyta taxa,which is consistent with the majority of documented species localities.The habitat suitability of the existing range of the Xerophyta species varied based on the climate scenario,with most species experiencing a range loss greater than the range gain regardless of the climate scenario.The projected spatiotemporal patterns of Xerophyta species help guide recommendations for conservation efforts.
基金supported by the National Key Research and Development Program of China (Grant No. 2018YFD1000300)the National Natural Science Foundation of China (Grant No. 32025032)+1 种基金the Grape Breeding Project of Ningxia (Grant No. NXNYYZ202101-04)Major Program of Technological Innovation in Hubei Province (Grant No. 2019ABA093).
文摘Histone H3 lysine 27 trimethylation(H3K27me3) is a histone modification associated with transcriptional repression. However, insights into the genome-wide pattern of H3K27me3 in grapevines are limited. Here, anti-H3K27 chromatin immunoprecipitation(ChIP), high-throughput sequencing, and transcriptome analysis were performed using leaves of Vitis amurensis. The leaves were treated at 4°C for 2 h and 24 h and used to investigate changes in H3K27me3 under chilling treatment. The results show that H3K27me3 is well-distributed both in gene regions(-50%) and in the intergenic region(-50%) in the grapevine genome(Vitis vinifera ‘Pinot Noir PN40024'). H3K27me3 was found to be localized in8 368 annotated gene regions in all detected samples(leaves at normal temperature and under chilling treatments) and mainly enriched in gene bodies with the adjacent promoter and downstream areas. The short-term chilling treatments(4°C for 2 h) induced 2 793 gains and 305losses in H3K27me3 modification. Subsequently, 97.3% of the alterations were restored to original levels after 24 h treatment. The ChIP-qPCR for five differential peaks showed similar results to the data for ChIP-seq, indicating that the chilling-induced H3K27me3 modification is reliable.Integrative analysis of transcriptome and ChIP-seq results showed that the expression of H3K27me3 target genes was significantly lower than those of non-target genes, indicating transcriptional repression of H3K27me3 in grapevine leaves. Furthermore, histone methylation alterations were detected in 82 genes and were related to either repression or activation of their expression during chilling stress. The findings provide the genome-wide H3K27me3 patterns in grapevines and shed light on uncovering its regulation in chilling stress responses.
基金financially supported by National Natural Science Foundation of China(32260046 and 31800176)the Sino-Africa Joint Research Centre(Y323771W07 and SAJC201322)。
文摘Field surveys and empirical integrated methods are commonly used in the ecological research to understand the altitudinal pattern of plant diversity of mountains.However,few studies have compared the differences between the two methods on the same scale.Here,we addressed and compared the altitudinal patterns of species richness(SR),phylogenetic diversity(PD),the standardized effect size of phylogenetic diversity(PDses)and mean phylogenetic distance(MPDses)of about 580 angiosperms growing on Mount Kenya from two independent datasets:one is based on our several times field surveys in this mountain and another one is based on empirical data integrated from literatures.We found that the altitudinal diversity patterns of field surveys dataset were consistent with the empirical integrated dataset.Both SR and PD showed hump-shaped patterns along the altitude,and both PDses and MPDses showed monotonically decreasing patterns along the altitude.The ratio of diversity between field surveys dataset and empirical integrated dataset were gradually increase along the altitude.Our research provides new insight for understanding the altitudinal diversity patterns of plants of a tropical mountain.
基金supported by the Second Tibetan Plateau Scientific Expedition and Research (STEP) Program (2019QZKK0502)the National Science Foundation of China (32260046)。
文摘China covers a vast territory harbouring a large number of aquatic plants.Although there are many studies on the β-diversity of total,herbaceous or woody plants in China and elsewhere,few studies have focused on aquatic plants.Here,we analyse a comprehensive data set of 889 aquatic angiosperm species in China,and explore the geographic patterns and climatic correlates of total taxonomic and phylogeneticβ-diversity as well as their turnover and nestedness components.Our results show that geographic patterns of taxonomic and phylogenetic β-diversity are highly congruent for aquatic angiosperms,and taxonomic β-diversity is consistently higher than phylogenetic β-diversity.The ratio between the nestedness component and total β-diversity is high in northwestern China and low in southeastern China.The geographic patterns of taxonomic and phylogenetic β-diversity of aquatic angiosperms in China are obviously affected by geographic and climatic distances,respectively.In conclusion,the geographic patterns of taxonomic and phylogenetic β-diversity of aquatic angiosperms are consistent across China.Climatic and geographic distances jointly affect the geographic patterns of β-diversity of aquatic angiosperms.Overall,our work provides insight into understanding the large-scale patterns of aquatic angiosperm β-diversity,and is a critical addition to previous studies on the macroecological patterns of terrestrial organisms.
文摘研究青藏高原地区植被的时空分布特征及其与地表温度和降水之间的关系,对区域乃至全球的生态环境均有重要意义。使用MOD13Q1归一化植被指数(NDVI)产品数据,分析了青藏高原地区2000—2019年NDVI的时空变化特征,并通过MOD11A2地表温度数据和TRMM卫星降水数据探究植被变化与地表温度和降水之间的关系。研究表明,青藏高原地区近20 a NDVI空间格局表现为西北低、东南高,北部干旱地区NDVI相对较低,普遍低于0.20,东南地区林地较多,整体NDVI偏高;2000—2019年青藏高原地区植被整体在“变绿”,NDVI处于0.0012 a^(-1)增长的趋势,北部低植被覆盖区显著改善,南部较高、高植被覆盖区变化不显著。研究区植被与地表温度和降水存在一定的相关性,在西藏的中部以及青海的中南部地区,NDVI值与降水呈现正相关性,偏相关系数较高;在西藏的西北部、青海的南部等地,NDVI值与地表温度呈正相关关系;在西藏中部等地,NDVI与地表温度呈负相关关系。
